mRNA_P-wetherbeei_contig14572.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14572.1.1
Unique NamemRNA_P-wetherbeei_contig14572.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14572.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14572contigP-wetherbeei_contig14572:16..1355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1164
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-07_002860.1
Cds size951
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.4590762-CDS-P-wetherbeei_contig14572:15..9661683186026.4590762-CDS-P-wetherbeei_contig14572:15..966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14572 16..966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.467377-UTR-P-wetherbeei_contig14572:966..10561683186026.467377-UTR-P-wetherbeei_contig14572:966..1056Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14572 967..1056 -
1683186026.4750457-UTR-P-wetherbeei_contig14572:1232..13551683186026.4750457-UTR-P-wetherbeei_contig14572:1232..1355Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14572 1233..1355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14572.1.1prot_P-wetherbeei_contig14572.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14572 16..966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14572.1.1

>prot_P-wetherbeei_contig14572.1.1 ID=prot_P-wetherbeei_contig14572.1.1|Name=mRNA_P-wetherbeei_contig14572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
MNMDLCAPPLLLVPEACSITSLQSPQPLDPPLKFSPAQQPPSQRSLPEPA
PPASISDADAPSAPVPAAAASAVMARAPPLSVAARDEALAAKDAALAVAA
RHHRRLATEVDLLESELEALRQLTAAKTEENRLQLRESERLRRETAQLRE
ALQLKDASKRGVEVAAAQNMRLLKLLEQEESKREVLMRERNDARVEASLL
AAQARGAVQRQAASEAQLEAKCQRVAGDAAAAAAARGIAETALAALRTAA
AERSAAAAAASAALRDEVERRAAEQYLLLEKLQRAEDDRDRWQDAHERRS
DDAAAAAGQCADLERRL
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mRNA from alignment at P-wetherbeei_contig14572:16..1355-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14572.1.1 ID=mRNA_P-wetherbeei_contig14572.1.1|Name=mRNA_P-wetherbeei_contig14572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1340bp|location=Sequence derived from alignment at P-wetherbeei_contig14572:16..1355- (Phaeothamnion wetherbeei SAG_119_79)
ACTTGAGAGCGGGGGGCCCGCCCAAAGGAAGTATGCTTCTCGTGCGTGAG
GTGGTTCGAGTGGCTACGTGAATCTACCTTCCTTTTTTCTTTCTCCTTTA
GGATCTATTCGTCGTGCTTTGAGGTATGAGCGACTTCTTCGCTTATTCAT
GTAAAGTCTGAAGTCGCAGTAATCGAATGAGCGTTGCCTTGCTGCAGCAA
GCATTACCTCTTCTACTCAGTCGAAAATTCGCAAGGTATTCCGACACCTC
CACTTTTCCTTTCACCTCTTCTCCCACCTCTGATGCTCCGCAAGGACAGA
ACTCCTCTGCTGCTTCACGAATCCAAGCTCCCGGGGGATTGAGCGACCCA
ACGGACCCGTTCATACGAGCCACGAAGACTCATAACATCATGAACATGGA
TCTCTGCGCGCCGCCGCTGCTCTTGGTGCCAGAGGCCTGCAGCATCACCA
GCCTCCAATCTCCGCAGCCCCTTGACCCGCCGTTAAAATTTTCGCCGGCT
CAACAACCGCCATCACAGCGATCGCTGCCGGAACCGGCGCCTCCCGCCAG
TATCTCCGATGCCGATGCCCCCAGCGCTCCTGTCCCAGCAGCTGCCGCCT
CAGCCGTTATGGCCCGCGCGCCGCCGCTTTCCGTCGCCGCCCGCGACGAG
GCGCTGGCCGCGAAGGACGCCGCGTTAGCCGTCGCCGCGCGGCACCACCG
CCGCCTCGCCACCGAGGTCGACCTGCTTGAGTCGGAGCTCGAGGCGTTGC
GGCAGCTCACGGCGGCGAAAACGGAAGAGAACCGGCTGCAACTGCGCGAA
AGCGAGCGCTTACGGCGTGAAACGGCCCAGCTGCGTGAGGCACTCCAGCT
GAAGGACGCGTCGAAGCGCGGCGTCGAGGTTGCGGCAGCGCAAAACATGC
GTCTCCTGAAATTGCTCGAGCAGGAAGAATCGAAGCGGGAAGTTTTGATG
CGCGAGCGGAACGACGCACGAGTCGAGGCCTCGTTGCTCGCCGCCCAGGC
GCGCGGCGCCGTGCAGCGGCAGGCAGCGTCGGAGGCGCAGCTCGAGGCCA
AGTGCCAGCGGGTGGCCGGCGATGCCGCGGCAGCGGCGGCGGCGCGGGGC
ATCGCCGAGACGGCGTTGGCGGCGCTGCGGACGGCGGCGGCGGAGCGCTC
GGCGGCGGCGGCGGCGGCGTCGGCGGCGCTGCGCGACGAGGTGGAGCGGC
GTGCGGCGGAACAATACCTGCTGCTGGAGAAGCTGCAACGCGCGGAGGAT
GACCGCGACCGCTGGCAGGACGCGCACGAGCGGCGATCGGACGACGCCGC
TGCCGCCGCCGGCCAGTGCGCCGACCTGGAACGCCGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14572:16..1355-

>mRNA_P-wetherbeei_contig14572.1.1 ID=mRNA_P-wetherbeei_contig14572.1.1|Name=mRNA_P-wetherbeei_contig14572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig14572:16..1355- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACATGGATCTCTGCGCGCCGCCGCTGCTCTTGGTGCCAGAGGCCTG
CAGCATCACCAGCCTCCAATCTCCGCAGCCCCTTGACCCGCCGTTAAAAT
TTTCGCCGGCTCAACAACCGCCATCACAGCGATCGCTGCCGGAACCGGCG
CCTCCCGCCAGTATCTCCGATGCCGATGCCCCCAGCGCTCCTGTCCCAGC
AGCTGCCGCCTCAGCCGTTATGGCCCGCGCGCCGCCGCTTTCCGTCGCCG
CCCGCGACGAGGCGCTGGCCGCGAAGGACGCCGCGTTAGCCGTCGCCGCG
CGGCACCACCGCCGCCTCGCCACCGAGGTCGACCTGCTTGAGTCGGAGCT
CGAGGCGTTGCGGCAGCTCACGGCGGCGAAAACGGAAGAGAACCGGCTGC
AACTGCGCGAAAGCGAGCGCTTACGGCGTGAAACGGCCCAGCTGCGTGAG
GCACTCCAGCTGAAGGACGCGTCGAAGCGCGGCGTCGAGGTTGCGGCAGC
GCAAAACATGCGTCTCCTGAAATTGCTCGAGCAGGAAGAATCGAAGCGGG
AAGTTTTGATGCGCGAGCGGAACGACGCACGAGTCGAGGCCTCGTTGCTC
GCCGCCCAGGCGCGCGGCGCCGTGCAGCGGCAGGCAGCGTCGGAGGCGCA
GCTCGAGGCCAAGTGCCAGCGGGTGGCCGGCGATGCCGCGGCAGCGGCGG
CGGCGCGGGGCATCGCCGAGACGGCGTTGGCGGCGCTGCGGACGGCGGCG
GCGGAGCGCTCGGCGGCGGCGGCGGCGGCGTCGGCGGCGCTGCGCGACGA
GGTGGAGCGGCGTGCGGCGGAACAATACCTGCTGCTGGAGAAGCTGCAAC
GCGCGGAGGATGACCGCGACCGCTGGCAGGACGCGCACGAGCGGCGATCG
GACGACGCCGCTGCCGCCGCCGGCCAGTGCGCCGACCTGGAACGCCGGCT
G
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