mRNA_P-wetherbeei_contig10377.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10377.1.1
Unique NamemRNA_P-wetherbeei_contig10377.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: D7G6A4_ECTSI (Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A4_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 3.870e-74
Identity = 149/276 (53.99%), Postives = 188/276 (68.12%), Query Frame = 1
Query:   46 VRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPP-AKTGADLLRER--AGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGGGGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAARFNSATDGSSG 864
            +RRLGL +++V  L S GL +A D+F+KTE+QL  +LD     +  LL   S R+ P  AKT  DLLRER  AG +  VAT +  +D AL+GG P GMITE+VGPAG+GK+Q CL  AA A +PA LGGLGE  GVVYLDTERKFS  RL EIA +R PGHYG+ + E  +G ++ LL+QV VF VD+S  L+ +LE+LQ  +IE +VR+++LDS+AALAR+DF         R E L RQAAVLK LA  FS VVLVTNQV  + +   T G  G
Sbjct:    7 LRRLGLDDDLVSRLASAGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSTRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDALQGGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVVYLDTERKFSPDRLVEIASERHPGHYGEFSTE--KGSMERLLNQVTVFPVDNSAALVDRLETLQARMIESNVRLIVLDSIAALARRDFARED--TLSRQELLTRQAAVLKSLAYTFSAVVLVTNQVTTSFY--PTSGLQG 276          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A2P6VC60_9CHLO (DNA repair RAD51-like protein 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VC60_9CHLO)

HSP 1 Score: 172 bits (436), Expect = 2.270e-47
Identity = 112/264 (42.42%), Postives = 158/264 (59.85%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRERAGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGGGGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQV 822
            MA R + R+GLP E+ + L +  +  A ++F++T + L   LD+   T+  +L   + R+ PP +T   LLR  A     + T L  +D AL GGLP G +TEVVGPAG+GK+Q+CL  A  A +        EG  V YLDTE+KFSA R+ +IA +R+P  +        +  L AL ++V VF    S DLL  L+S++  II+  VR++ILDSVA+LAR DF  G   +  R   L +QA+ LK+LA+AF + VLVTNQV
Sbjct:    1 MATRQLSRVGLPPELAQRLAARNINVARELFSRTIVDLVELLDLPYNTVRQILRQVAERITPPPQTALALLRTAAAQPLHLRTSLGPLDEALFGGLPAGSVTEVVGPAGLGKTQLCLQMAVLACLEREA----EGGSVAYLDTEKKFSAVRMRQIAGERFPDAF------PSKEALTALTARVLVFNPRSSSDLLATLQSIEAAIIDHRVRLLILDSVASLARADFAPGS--LPERQRMLGQQASRLKYLAEAFRIPVLVTNQV 252          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A6P4YVG7_BRABE (DNA repair protein RAD51 homolog 2-like isoform X7 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YVG7_BRABE)

HSP 1 Score: 164 bits (416), Expect = 1.270e-44
Identity = 105/279 (37.63%), Postives = 166/279 (59.50%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNG-LTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRE--RAGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGG-GGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAARFNSATDG 855
            M+ R +RRLGL  E+V+ L  +  L+S  DI  K  ++L H  +++ + +  ++   S   AP   T   + +    +G+A   +T LP +D AL GG+P G +TE+ GPAG GK+Q C+  +  A +P  +GGLG    VVY+DTE  FSA RL E+A+ R P H+ +      +     L SQV+V       DL  +L+SL+  +IEK VR+V+LDSVA++ RK+F     G +  R + L ++AA+LK+LA++ ++ ++VTNQ+   RF ++ +G
Sbjct:    1 MSLRKLRRLGLEPELVDRLERHKKLSSCQDILVKVHLELQHLTNLNHSDVQKIVTATSRACAPTPTTALQMKQAGLSSGSAPFFSTSLPGLDQALHGGIPAGSVTEIAGPAGCGKTQFCIMLSVLATLPCEMGGLGGA--VVYIDTESAFSAERLVEVAQDRCPHHFSN------DDAFYKLTSQVYVHKTPTCSDLWNRLQSLEEELIEKRVRLVVLDSVASVVRKEFDNSLRGNLAQRVKLLAKEAALLKYLAESLNIPIIVTNQI-TTRFKASWEG 270          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A2P6TEB6_CHLSO (H(+) Cl(-) exchange transporter 7 isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TEB6_CHLSO)

HSP 1 Score: 173 bits (438), Expect = 1.850e-44
Identity = 116/280 (41.43%), Postives = 167/280 (59.64%), Query Frame = 1
Query:   22 QNEMARRSVRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRERAGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKL-ESLQPFIIEKSVRIVILDSVAALARKDFGGGGGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAARFNSATDGS 858
            +++MA R + R+GLP  + + L    + +A D+F +T ++L   LD+   T+  +LA  +A+++P  +T ADLLR  A     + T L  +DAAL GGLP G +TE+VG AG+GK+QMCL       +        EG  VVYLDTE+KFS  R+ +IAR+R+P  +       GE  L AL S+V V++  +S  LL  L +SL+  +I+  VR++ILDS A LAR DF  G   +  R   L +QA+ LK+LA+AF + VLVTNQV   R     DG+
Sbjct: 1967 EHKMATRQLSRIGLPPPLQQRLAERNVQTARDLFQRTLLELVELLDLPYDTVRHILAEVAAKVSPQPRTVADLLRAAAAKPLLLRTSLGPLDAALLGGLPAGSVTELVGAAGLGKTQMCLQMCVLGCLERQA----EGASVVYLDTEKKFSGRRMTQIARERFPEAF------PGEEALAALASRVLVYSPPNSQALLSVLGQSLEQTVIDHKVRLIILDSAACLARADFAPGS--LPDRQRMLGQQASRLKYLAEAFQIPVLVTNQV-TTRIGGEGDGA 2233          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: Q6Q241_CHLRE (Putative Rad51B protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=Q6Q241_CHLRE)

HSP 1 Score: 165 bits (417), Expect = 3.600e-44
Identity = 126/289 (43.60%), Postives = 166/289 (57.44%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRERAGTASSVA---TRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQAL------LSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFG------------GGGGG----IRPRNEALVRQAAVLKHLADAFSLVVLVTNQV 822
            MA R V RL L   + + L +N LT+A D+   + + L   L +       LLA  SA+++PP  T  D+  ++A TA + A   T LPT+D ALR G+PVG ITE+VGP GVGKSQ+    A A AMP ALGGL  G GVVY+DTERKFSAPRL E+   R       AAG      LQ L      L +V V T   +  L++ +E+LQ  +++   R+V++DS+AALAR ++G            GGGGG    I  R + L R AA LK LA++  + VLVTNQV
Sbjct:    1 MATRHVSRLALDPYLRDHLIANNLTTARDVLLLSPLDLMELLGLTWTAAHQLLADVSAQISPPYSTAYDVFTQQA-TAEAPAPLRTGLPTLDGALRLGVPVGSITELVGPGGVGKSQLSHMLALAVAMPEALGGL--GAGVVYIDTERKFSAPRLQEMVHAR-VAEAAAAAGPQAAHVLQPLAVQGEVLRRVAVSTPGSTEQLMQTVENLQHTVLQYRARLVVVDSIAALARTEYGNPSSSGASGSVAGGGGGLVGSIMDRQQVLGRIAASLKALAESLRIPVLVTNQV 285          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A1Y1ICX6_KLENI (Putative DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICX6_KLENI)

HSP 1 Score: 164 bits (415), Expect = 6.910e-44
Identity = 108/277 (38.99%), Postives = 162/277 (58.48%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRERAGTAS-----------SVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGGGGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMA 828
            M  + + RL +   +   L S  L +A D+  KTE+ L   LD+ A  +   +A  S  +AP  +T  ++  ++                 + T LP++D ALRGG+P+G ITE+VGPAGVGK+Q+CL  +  A +P  +GGL +G   VY+DTE KFSA RL EIA  R P  + D      E  +Q L S+V V   + ++DLL +L+ L+  +I +  ++++LDSVAAL R ++G     ++ R + L RQAA+LK+LA+ F + V+VTNQVMA
Sbjct:    1 MGSKEISRLNIEGLVAHRLKSRRLETAKDVLCKTELDLVELLDLPADVVAKAVAAISQNVAPTRRTVLEMYMDQQQPGDIQGGHLHTDLPKLPTNLPSLDDALRGGVPLGSITELVGPAGVGKTQLCLMLSIFATLPTDIGGL-DGK-CVYIDTENKFSAKRLIEIATMRLPDSFPD------EQAVQHLTSRVLVLRPNSAIDLLTRLQKLEEAMIREKAKLIVLDSVAALVRSEYGHDQ--LQQRQDLLGRQAALLKYLAETFRIPVVVTNQVMA 267          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: UPI00160417F1 (DNA repair protein RAD51 homolog 2-like isoform X2 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160417F1)

HSP 1 Score: 162 bits (411), Expect = 7.290e-44
Identity = 108/279 (38.71%), Postives = 164/279 (58.78%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNG-LTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRE--RAGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGG-GGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAARFNSATDG 855
            M+ R +RRLGL  E+V+ L  +  L+S  DI  K  ++L H  ++  + +  ++  AS   AP   T   +      +G+AS  +T L  +D AL GG+P G +TE+ GPAG GK+Q C+  +  A +P  +GGLG    VVY+DTE  FSA RL E+A+ R P H+        +     L SQVFV       DL  +L+SL+  +I+K VR+VILDSVA++ RK+F     G +  R + L ++AA+LK+LA++ ++ V+VTNQ+   RF ++ +G
Sbjct:    1 MSLRKLRRLGLEPELVDRLERHKKLSSCQDILVKIHLELLHLTNLTHSDVQKIVMTASRACAPTTTTALQMKEAGVSSGSASFFSTSLSGLDQALHGGIPAGSVTEIAGPAGCGKTQFCVMLSVLATLPCEMGGLGGA--VVYIDTESAFSAERLVEVAQFRCPQHFSS------DDAFYKLTSQVFVHKTPTCTDLWNRLQSLEEELIQKRVRLVILDSVASVVRKEFDNSLRGNLSQRVKLLAKEAALLKYLAESLNIPVVVTNQI-TTRFKASWEG 270          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A6P4Z3S1_BRABE (DNA repair protein RAD51 homolog 2-like isoform X1 n=6 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z3S1_BRABE)

HSP 1 Score: 164 bits (416), Expect = 9.720e-44
Identity = 105/279 (37.63%), Postives = 166/279 (59.50%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNG-LTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRE--RAGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGG-GGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAARFNSATDG 855
            M+ R +RRLGL  E+V+ L  +  L+S  DI  K  ++L H  +++ + +  ++   S   AP   T   + +    +G+A   +T LP +D AL GG+P G +TE+ GPAG GK+Q C+  +  A +P  +GGLG    VVY+DTE  FSA RL E+A+ R P H+ +      +     L SQV+V       DL  +L+SL+  +IEK VR+V+LDSVA++ RK+F     G +  R + L ++AA+LK+LA++ ++ ++VTNQ+   RF ++ +G
Sbjct:    1 MSLRKLRRLGLEPELVDRLERHKKLSSCQDILVKVHLELQHLTNLNHSDVQKIVTATSRACAPTPTTALQMKQAGLSSGSAPFFSTSLPGLDQALHGGIPAGSVTEIAGPAGCGKTQFCIMLSVLATLPCEMGGLGGA--VVYIDTESAFSAERLVEVAQDRCPHHFSN------DDAFYKLTSQVYVHKTPTCSDLWNRLQSLEEELIEKRVRLVVLDSVASVVRKEFDNSLRGNLAQRVKLLAKEAALLKYLAESLNIPIIVTNQI-TTRFKASWEG 270          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A8J9ZSB9_BRALA (RAD51B protein n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A8J9ZSB9_BRALA)

HSP 1 Score: 162 bits (410), Expect = 3.340e-43
Identity = 108/279 (38.71%), Postives = 166/279 (59.50%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNG-LTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRE--RAGTASSVATRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGG-GGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAARFNSATDG 855
            M+ R +RRLGL  E+V+ L  +  L+S  DI  K  ++L H  ++  + +  ++  AS   AP   T   + +    +G+   ++T LP +D AL GG+P G +TE+ GPAG GK+Q C+  +  A +P  +GGLG    VVY+DTE  FSA RL E+A+ R P H+     +D       L SQV+V       DL  +L+ L+  +IEK VR+VILDSVA++ RK+F     G +  R + L ++AA+LK+LA++ ++ V+VTNQ+   RFN++ +G
Sbjct:    1 MSLRKLRRLGLEPELVDRLERHKKLSSCQDILEKIHLELLHLTNLTHSDVQKIVMTASRACAPTPTTALQMRQAGFSSGSTPFLSTSLPGLDQALHGGIPAGSVTEIAGPAGCGKTQFCIMLSVLATLPCEMGGLGGA--VVYIDTESAFSAERLVEVAQGRCPQHF---CSDDA---FYKLTSQVYVHKTPTCTDLWNRLQCLEEELIEKRVRLVILDSVASVVRKEFDNSLRGNLSQRVKLLSKEAALLKYLAESLNIPVVVTNQI-TTRFNTSREG 270          
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Match: A0A8B7YX36_ACAPL (DNA repair protein RAD51 homolog 2-like isoform X2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YX36_ACAPL)

HSP 1 Score: 160 bits (406), Expect = 1.340e-42
Identity = 114/289 (39.45%), Postives = 168/289 (58.13%), Query Frame = 1
Query:   31 MARRSVRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLTALLAVASARLAPPAKTGADLLRERAGTASSVA---TRLPTIDAALRGGLPVGMITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAPRLAEIARQRWPGHYG-DAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLESLQPFIIEKSVRIVILDSVAALARKDFGGG-GGGIRPRNEALVRQAAVLKHLADAFSLVVLVTNQVMAA--RFNSATDGSSGAVST 876
            M+ R ++RLG+   ++E L  +G+ S  D+ +KT ++L     V  + LT +L VAS R   P +T A  + + AG     A   T L  +D  L GGLP G I+E+ GP G GK+Q C+  +  A +PAA+GGL +G  V Y+DTE  FSA RL E+AR R+P H+  D A         AL S++ V+       LL +L++L+  +I K +R+++LDSVA+L RK+F     G +  R   L +QAA+LK+LA+AFS+ V+VTNQ+       +SA  GS+    T
Sbjct:   29 MSSRKIQRLGIAPPVIERLHRHGVFSCQDLLSKTRLELLKMTGVTNSQLTNILLVAS-RACLPRQTTALSMYDAAGREECPAFFKTSLGQLDQVLHGGLPAGTISEIAGPPGCGKTQFCIMLSVLATLPAAMGGL-DGA-VAYIDTESAFSAERLVEVARCRFPVHFSCDEA-------YIALTSRIHVYQESTCCSLLARLQNLEEDLITKGIRLIVLDSVASLVRKEFDSSLRGNLIERTNLLSKQAAILKYLAEAFSIPVVVTNQITTRLRAQHSACQGSTDEAGT 307          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10377.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A4_ECTSI3.870e-7453.99Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus silicul... [more]
A0A2P6VC60_9CHLO2.270e-4742.42DNA repair RAD51-like protein 2 n=1 Tax=Micractini... [more]
A0A6P4YVG7_BRABE1.270e-4437.63DNA repair protein RAD51 homolog 2-like isoform X7... [more]
A0A2P6TEB6_CHLSO1.850e-4441.43H(+) Cl(-) exchange transporter 7 isoform X2 n=1 T... [more]
Q6Q241_CHLRE3.600e-4443.60Putative Rad51B protein n=2 Tax=Chlamydomonas rein... [more]
A0A1Y1ICX6_KLENI6.910e-4438.99Putative DNA repair protein RAD51 n=1 Tax=Klebsorm... [more]
UPI00160417F17.290e-4438.71DNA repair protein RAD51 homolog 2-like isoform X2... [more]
A0A6P4Z3S1_BRABE9.720e-4437.63DNA repair protein RAD51 homolog 2-like isoform X1... [more]
A0A8J9ZSB9_BRALA3.340e-4338.71RAD51B protein n=3 Tax=Branchiostoma TaxID=7737 Re... [more]
A0A8B7YX36_ACAPL1.340e-4239.45DNA repair protein RAD51 homolog 2-like isoform X2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10377contigP-wetherbeei_contig10377:2..1638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6A4
Preferred nameRAD51B
PFAMsRad51
Model size993
Max annot lvl2759|Eukaryota
KEGG koko:K10869
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001824,GO:0001832,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007346,GO:0007596,GO:0007599,GO:0008094,GO:0008150,GO:0008152,GO:0008284,GO:0009314,GO:0009611,GO:0009628,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010971,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0040007,GO:0042060,GO:0042127,GO:0042148,GO:0042623,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0045787,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051321,GO:0051716,GO:0051726,GO:0060429,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090068,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903046
Exons4
Evalue1.61e-75
EggNOG OGsCOG0468@1|root,KOG1433@2759|Eukaryota
Descriptionrecombinase activity
Cds size963
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.1875072-CDS-P-wetherbeei_contig10377:1..4181683185866.1875072-CDS-P-wetherbeei_contig10377:1..418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10377 2..418 -
1683185866.1989408-CDS-P-wetherbeei_contig10377:639..10651683185866.1989408-CDS-P-wetherbeei_contig10377:639..1065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10377 640..1065 -
1683185866.2061777-CDS-P-wetherbeei_contig10377:1370..14871683185866.2061777-CDS-P-wetherbeei_contig10377:1370..1487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10377 1371..1487 -
1683185866.2137468-CDS-P-wetherbeei_contig10377:1605..16081683185866.2137468-CDS-P-wetherbeei_contig10377:1605..1608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10377 1606..1608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.2217903-UTR-P-wetherbeei_contig10377:1608..16381683185866.2217903-UTR-P-wetherbeei_contig10377:1608..1638Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10377 1609..1638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10377.1.1prot_P-wetherbeei_contig10377.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10377 2..1608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10377.1.1

>prot_P-wetherbeei_contig10377.1.1 ID=prot_P-wetherbeei_contig10377.1.1|Name=mRNA_P-wetherbeei_contig10377.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MARRSVRRLGLPEEIVESLCSNGLTSATDIFAKTEIQLAHTLDVDAATLT
ALLAVASARLAPPAKTGADLLRERAGTASSVATRLPTIDAALRGGLPVGM
ITEVVGPAGVGKSQMCLSAAAAAAMPAALGGLGEGTGVVYLDTERKFSAP
RLAEIARQRWPGHYGDAAGEDGEGRLQALLSQVFVFTVDHSVDLLKKLES
LQPFIIEKSVRIVILDSVAALARKDFGGGGGGIRPRNEALVRQAAVLKHL
ADAFSLVVLVTNQVMAARFNSATDGSSGAVSTGAGGAAGTTAGGGNGDSA
SGTSGGGGGDGDWEGGVSDGG
back to top

mRNA from alignment at P-wetherbeei_contig10377:2..1638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10377.1.1 ID=mRNA_P-wetherbeei_contig10377.1.1|Name=mRNA_P-wetherbeei_contig10377.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1637bp|location=Sequence derived from alignment at P-wetherbeei_contig10377:2..1638- (Phaeothamnion wetherbeei SAG_119_79)
CTTTCGCGGAAAGCAAGCCAGCAAAACGAAATGGTATTTTCTCCTTTCCA TAGATCGTTTTGCCCAATCTGTTTGTTTCCTCCTCCGTTCCGCAGCTCTT GATTCGAACTTCATTTCAAATCCCTCCACACCTATCCATCCCCTTTTCCA GGCAAGACGAAGCGTCCGGCGGCTGGGGCTGCCTGAAGAGATCGTCGAAA GCTTGTGTAGCAACGGGCTTACCTCAGCGACAGACATCTTTGCGAAGACG GAAATCCAGCTCGCGCACGTGAGTGAAAAGTTCCTCTCATCCAGAAAGAA TCCTTGGGCTCACGGCAATGCCAGGTGCGGTTGACAAACCACACACAAAG CACCGTACGGCGCGGTGGCAACCTTGTGGTGTCTGTGCGCCGATTTCTGG CTGTGCTTCGCCTCCAAGCACTGCTATAGCCCACCGTACAGAACGTCTCC GGCTAACTCCGGTTTGGCTTCGCAAAACGGTCAACAATTGATGCCGCGGG TCATTTGAAACTTTGCGATGGCTTAGCTAACAAATATGCCTGCTTCTCCC GTCCATTTTGTGCCTCTGTGCAGACGCTGGACGTGGACGCAGCAACGCTC ACGGCGCTGCTGGCGGTGGCGTCCGCTCGCCTGGCCCCTCCGGCAAAGAC GGGCGCCGACCTGCTGCGGGAGCGCGCGGGCACTGCCTCCTCCGTCGCCA CGCGGCTCCCGACCATCGACGCCGCCCTCCGCGGTGGGCTGCCCGTCGGC ATGATCACCGAGGTGGTCGGTCCCGCCGGCGTCGGAAAGTCGCAGATGTG CCTCAGCGCGGCCGCCGCCGCAGCAATGCCGGCTGCGCTCGGCGGGCTTG GCGAGGGCACTGGCGTCGTGTACCTCGACACAGAGCGCAAGTTCAGCGCG CCGCGGTTAGCGGAGATCGCGCGGCAGCGGTGGCCCGGCCACTATGGCGA CGCGGCGGGTGAGGACGGGGAGGGGCGACTCCAGGCGCTGCTCTCGCAGG TGCGTTTGTTTCTGGGGAGCGCGGAGGCAAGATGCTCACGGGACAGGATA TAGGCAGGCAGGTGCATTCAGCAGCTCCGCTGTTCTTTCGTGCTTTCAAC CTTCAAACCCGTTGCTTCCGACTACGTAGTTTTCGTGCCCGTGCGTTTCA GGTCGGCGCTGGCGGGGTTTGGAGAAGGGTTGTTGCACCTTTTGAACACC AATGCCACAATAACTCGCAGGTTTTTGTGTTCACGGTGGACCACTCGGTT GACTTGCTGAAGAAGCTCGAGTCGCTGCAACCCTTCATCATCGAAAAGAG CGTGCGCATCGTCATTCTCGACTCGGTAGCCGCGCTCGCCCGGAAGGACT TCGGCGGCGGCGGCGGTGGGATTCGCCCGCGAAACGAGGCGCTGGTGCGG CAGGCCGCCGTACTGAAGCATTTAGCGGACGCGTTTTCGCTCGTCGTCCT CGTGACGAATCAAGTCATGGCGGCCCGGTTCAACTCCGCCACTGACGGCA GCTCCGGAGCGGTATCGACGGGGGCTGGCGGTGCAGCAGGAACGACTGCA GGCGGAGGAAACGGCGACAGCGCCTCCGGTACCAGCGGCGGTGGCGGCGG TGACGGTGATTGGGAAGGCGGTGTGAGCGACGGCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10377:2..1638-

>mRNA_P-wetherbeei_contig10377.1.1 ID=mRNA_P-wetherbeei_contig10377.1.1|Name=mRNA_P-wetherbeei_contig10377.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig10377:2..1638- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAGACGAAGCGTCCGGCGGCTGGGGCTGCCTGAAGAGATCGTCGA
AAGCTTGTGTAGCAACGGGCTTACCTCAGCGACAGACATCTTTGCGAAGA
CGGAAATCCAGCTCGCGCACACGCTGGACGTGGACGCAGCAACGCTCACG
GCGCTGCTGGCGGTGGCGTCCGCTCGCCTGGCCCCTCCGGCAAAGACGGG
CGCCGACCTGCTGCGGGAGCGCGCGGGCACTGCCTCCTCCGTCGCCACGC
GGCTCCCGACCATCGACGCCGCCCTCCGCGGTGGGCTGCCCGTCGGCATG
ATCACCGAGGTGGTCGGTCCCGCCGGCGTCGGAAAGTCGCAGATGTGCCT
CAGCGCGGCCGCCGCCGCAGCAATGCCGGCTGCGCTCGGCGGGCTTGGCG
AGGGCACTGGCGTCGTGTACCTCGACACAGAGCGCAAGTTCAGCGCGCCG
CGGTTAGCGGAGATCGCGCGGCAGCGGTGGCCCGGCCACTATGGCGACGC
GGCGGGTGAGGACGGGGAGGGGCGACTCCAGGCGCTGCTCTCGCAGGTTT
TTGTGTTCACGGTGGACCACTCGGTTGACTTGCTGAAGAAGCTCGAGTCG
CTGCAACCCTTCATCATCGAAAAGAGCGTGCGCATCGTCATTCTCGACTC
GGTAGCCGCGCTCGCCCGGAAGGACTTCGGCGGCGGCGGCGGTGGGATTC
GCCCGCGAAACGAGGCGCTGGTGCGGCAGGCCGCCGTACTGAAGCATTTA
GCGGACGCGTTTTCGCTCGTCGTCCTCGTGACGAATCAAGTCATGGCGGC
CCGGTTCAACTCCGCCACTGACGGCAGCTCCGGAGCGGTATCGACGGGGG
CTGGCGGTGCAGCAGGAACGACTGCAGGCGGAGGAAACGGCGACAGCGCC
TCCGGTACCAGCGGCGGTGGCGGCGGTGACGGTGATTGGGAAGGCGGTGT
GAGCGACGGCGGC
back to top