mRNA_P-wetherbeei_contig14551.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14551.1.1
Unique NamemRNA_P-wetherbeei_contig14551.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14551.1.1 vs. uniprot
Match: D8LKE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.090e-21
Identity = 112/243 (46.09%), Postives = 135/243 (55.56%), Query Frame = 1 
Query:    1 PASAGFRRWLAGRPSARQAFSAVSSARTIGLDDPELSFQQLELESRRGVTGDGAAEAVEAHYDAVCERSVGRTESPGKSKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSASPRRGANAKXXXXXXKTAGRGKGSVATLXXXXXXXXXPAVLPARAAAAAFVARRFPDATRPASSLLGREQADEVAAVLAAFAREGLPPVQPAMLRRGLLVPEDRPVEQCWAGMRAPLEGLADLPAP 729
            P+SA FR W+  RP AR A SAVSSART+G+DDPEL   QLE+ESRRG   +     +E HY AV  ++      P + +G      XXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXX      +G+ A+                  +A AF+A  FP   +   SLLG EQ +E      A +R GL  V    LRR L++P DRP+E C AG+  P EGL D P P
Sbjct:  259 PSSAAFRGWIKARPGARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGMSESTLARMEDHYTAVVLKNTSAPRRPQQQRGRPASPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTAASGKVYT-------------SAGAFMAEHFPSEEKQGVSLLGMEQEEECRNASDALSRVGLS-VSNEALRRALVIPTDRPLETCLAGLPHPTEGLRDAPFP 487
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BLAST of mRNA_P-wetherbeei_contig14551.1.1 vs. uniprot
Match: A0A6H5JDF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.820e-16
Identity = 110/243 (45.27%), Postives = 132/243 (54.32%), Query Frame = 1 
Query:    1 PASAGFRRWLAGRPSARQAFSAVSSARTIGLDDPELSFQQLELESRRGVTGDGAAEAVEAHYDAVCERSVGRTESPGKSKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSASPRRGANAKXXXXXXKTAGRGKGSVATLXXXXXXXXXPAVLPARAAAAAFVARRFPDATRPASSLLGREQADEVAAVLAAFAREGLPPVQPAMLRRGLLVPEDRPVEQCWAGMRAPLEGLADLPAP 729
            P+SA FR W+  RP AR A SAVSSART+G+DDPEL   QLE+ESRRG   +     +E HY AV  ++      P + +G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXX      +G+ A+                  +A AF+A  FP            E+  E      A +R GL  V    LRR L++P DRP+E C AG+  P EGL D P P
Sbjct:  477 PSSAAFRGWIKARPGARSAVSAVSSARTLGMDDPELVHLQLEMESRRGGMSESTLVRMEDHYTAVVLKNTIVPRRPQQQRGRPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTAASGKVYT-------------SAGAFMAEHFPS-----------EEEQECRKASEALSRAGLS-VSSEALRRALVIPTDRPLETCLAGLPHPTEGLRDAPFP 694
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BLAST of mRNA_P-wetherbeei_contig14551.1.1 vs. uniprot
Match: A0A836C9T7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.720e-8
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    7 SAGFRRWLAGRPSARQAFSAVSSARTIGLDDPELSFQQLELESRRGVTGDGAAEA-VEAHYD---AVCERSVGRTESPGKSKGS 246
            SAGF  WL  RP+A +A SAVSSART GL+DP L++QQLELESRR      AA A V+A Y    +  ++S G       SK S
Sbjct:  535 SAGFAAWLRRRPAAARAVSAVSSARTEGLEDPLLAYQQLELESRRAPRLSAAALARVDAAYSEPASSAQQSKGAAAGKAPSKPS 618
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14551.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKE2_ECTSI1.090e-2146.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDF5_9PHAE4.820e-1645.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9T7_9STRA4.720e-851.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14551contigP-wetherbeei_contig14551:804..1694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size729
Hectar predicted targeting categorymitochondrion
Exons2
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.7369533-CDS-P-wetherbeei_contig14551:803..13131683186025.7369533-CDS-P-wetherbeei_contig14551:803..1313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14551 804..1313 -
1683186025.7475424-CDS-P-wetherbeei_contig14551:1475..16941683186025.7475424-CDS-P-wetherbeei_contig14551:1475..1694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14551 1476..1694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14551.1.1prot_P-wetherbeei_contig14551.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14551 804..1694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14551.1.1

>prot_P-wetherbeei_contig14551.1.1 ID=prot_P-wetherbeei_contig14551.1.1|Name=mRNA_P-wetherbeei_contig14551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
PASAGFRRWLAGRPSARQAFSAVSSARTIGLDDPELSFQQLELESRRGVT
GDGAAEAVEAHYDAVCERSVGRTESPGKSKGSSRSPSRSRSKSGGSRRKT
KNNSGSRSGSRSRFGSASPRRGANAKAKARGSKTAGRGKGSVATLLLPPP
SPPRPAVLPARAAAAAFVARRFPDATRPASSLLGREQADEVAAVLAAFAR
EGLPPVQPAMLRRGLLVPEDRPVEQCWAGMRAPLEGLADLPAP
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mRNA from alignment at P-wetherbeei_contig14551:804..1694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14551.1.1 ID=mRNA_P-wetherbeei_contig14551.1.1|Name=mRNA_P-wetherbeei_contig14551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig14551:804..1694- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGTCAGCGGGTTTTCGCCGCTGGCTAGCCGGACGGCCGAGCGCACG
CCAGGCATTTTCGGCGGTTTCTTCGGCGCGCACGATCGGCCTGGACGATC
CCGAGCTGTCGTTCCAGCAGCTGGAGCTCGAGTCGCGTCGCGGCGTCACC
GGCGACGGCGCCGCCGAGGCGGTCGAGGCGCATTACGACGCCGTCTGCGA
GCGCAGCGTCGGCAGGACCGTCGCCGGGGATTACGGCCGTTACGGCGGCG
GCGACAACAAAAGCGGCGGCGACAGCGGTGGCGGTAAGGGTGGCAAAAGT
GGCGGTGGCACGGCCGCGCGGGGAAGGTCACCTCCAAGGAAAGGAAGTGC
CGGGGGGAAGATGGGCAAGGGGCACAGCAAGGAGAGCCCCGGCAAGAGCA
AAGGCAGCAGCCGCAGCCCGAGCCGCAGCCGCAGCAAATCAGGCGGCTCA
AGAAGGAAAACCAAGAACAACAGCGGCAGCCGCAGCGGGTCGCGGAGCCG
CTTCGGCTCCGCGTCGCCGCGCCGGGGTGCGAACGCCAAAGCCAAGGCCC
GCGGCAGCAAGACGGCTGGAAGAGGTAAAGGTTCCGTCGCCACACTGCTG
CTGCCGCCGCCATCGCCGCCACGACCGGCCGTCCTGCCGGCGCGGGCGGC
GGCCGCCGCCTTCGTGGCGCGGCGGTTCCCCGACGCGACCCGGCCGGCCT
CGAGCTTGCTGGGCCGCGAGCAGGCCGACGAAGTGGCGGCGGTGCTAGCG
GCGTTCGCCCGGGAAGGGCTGCCGCCGGTGCAGCCCGCCATGCTCCGCCG
CGGACTGCTCGTGCCGGAAGACCGCCCGGTGGAGCAGTGCTGGGCCGGGA
TGCGGGCGCCGCTGGAGGGACTCGCGGACCTGCCGGCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14551:804..1694-

>mRNA_P-wetherbeei_contig14551.1.1 ID=mRNA_P-wetherbeei_contig14551.1.1|Name=mRNA_P-wetherbeei_contig14551.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig14551:804..1694- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGTCAGCGGGTTTTCGCCGCTGGCTAGCCGGACGGCCGAGCGCACG
CCAGGCATTTTCGGCGGTTTCTTCGGCGCGCACGATCGGCCTGGACGATC
CCGAGCTGTCGTTCCAGCAGCTGGAGCTCGAGTCGCGTCGCGGCGTCACC
GGCGACGGCGCCGCCGAGGCGGTCGAGGCGCATTACGACGCCGTCTGCGA
GCGCAGCGTCGGCAGGACCGAGAGCCCCGGCAAGAGCAAAGGCAGCAGCC
GCAGCCCGAGCCGCAGCCGCAGCAAATCAGGCGGCTCAAGAAGGAAAACC
AAGAACAACAGCGGCAGCCGCAGCGGGTCGCGGAGCCGCTTCGGCTCCGC
GTCGCCGCGCCGGGGTGCGAACGCCAAAGCCAAGGCCCGCGGCAGCAAGA
CGGCTGGAAGAGGTAAAGGTTCCGTCGCCACACTGCTGCTGCCGCCGCCA
TCGCCGCCACGACCGGCCGTCCTGCCGGCGCGGGCGGCGGCCGCCGCCTT
CGTGGCGCGGCGGTTCCCCGACGCGACCCGGCCGGCCTCGAGCTTGCTGG
GCCGCGAGCAGGCCGACGAAGTGGCGGCGGTGCTAGCGGCGTTCGCCCGG
GAAGGGCTGCCGCCGGTGCAGCCCGCCATGCTCCGCCGCGGACTGCTCGT
GCCGGAAGACCGCCCGGTGGAGCAGTGCTGGGCCGGGATGCGGGCGCCGC
TGGAGGGACTCGCGGACCTGCCGGCGCCG
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