mRNA_P-wetherbeei_contig1454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1454.1.1
Unique NamemRNA_P-wetherbeei_contig1454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A662WMH0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.820e-27
Identity = 72/164 (43.90%), Postives = 93/164 (56.71%), Query Frame = 1 
Query:   70 ACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGA---ALAPAGLDRLDPDRESLTCAVC-LGHGGAAVQCAVPECLVAMHPFCA 549
            +C++C   +S++DDPI+ CDG  C+VA HQ CYGI  VP+G WFC+ C   +A                A+  S PRC LC  RG  A KR+A G W H+ C LW PEL ++      L    L RLDPDR++L C++C  G G   VQCA   CL+A H  CA
Sbjct: 1406 SCSICRESESYDDDPIVFCDG--CSVAVHQFCYGIRVVPSGKWFCEVCAEASAGAG-------------ASRSSQPRCHLCPLRGG-AFKRTACGRWVHVQCFLWIPELEVQQGDNDKLTLGTLSRLDPDRKTLDCSLCHSGKGHGIVQCAYKRCLIAFHVSCA 1553
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A329SCB6_9STRA (Fanconi anemia group M protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCB6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.000e-25
Identity = 72/166 (43.37%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:   67 GACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDAC-QVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGA---ALAPAGLDRLDPDRESLTCAVCLGH-GGAAVQCAVPECLVAMHPFCA 549
            G C++C   +S++DDPI+ CDG  CNVA HQ CYGI  VP+  WFCD C +V A+                    S PRCQLC  RG  A KR+  G W H+ C LW PE  +E      L    L+RLDPDR++L C++C    G   +QCA   CL A H  CA
Sbjct: 1311 GCCSICLESESYDDDPIVFCDG--CNVAVHQFCYGIRVVPSDKWFCDVCTEVHASGVNGVNPP------------SQPRCQLCPHRGG-AFKRTTCGQWVHVQCFLWIPEFRVEQGDNDMLVLGTLNRLDPDRKTLDCSLCHSQKGNGVIQCAHKRCLAAFHVSCA 1461
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A833SYU5_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYU5_PHYIN)

HSP 1 Score: 125 bits (315), Expect = 3.850e-25
Identity = 72/164 (43.90%), Postives = 85/164 (51.83%), Query Frame = 1 
Query:   70 ACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGAA---LAPAGLDRLDPDRESLTCAVCLGH-GGAAVQCAVPECLVAMHPFCA 549
            +C VC   +S++DDPI+ CDG  CNVA HQ CYGI +VP   WFCD C  R A                    S PRCQLC  RG  A KR+  G W H+ C LW PE  +E      L    L RLDPDR++L C +C    G   +QCA   CL A H  CA
Sbjct: 1272 SCAVCLESESYDDDPIVFCDG--CNVAVHQFCYGIRSVPHDKWFCDVCTDRRAGGVNEPKP------------SQPRCQLCPHRGG-AYKRTTCGQWVHVQCFLWIPEFRVEQGRDDMLVLGNLSRLDPDRKTLDCCLCHSRKGNGIIQCAHKRCLAAFHVSCA 1420
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: W2QKT9_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QKT9_PHYPN)

HSP 1 Score: 124 bits (312), Expect = 8.520e-25
Identity = 71/163 (43.56%), Postives = 86/163 (52.76%), Query Frame = 1 
Query:   73 CNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGA---ALAPAGLDRLDPDRESLTCAVCLG-HGGAAVQCAVPECLVAMHPFCA 549
            C+VC   +S++DDPI+ CDG  CNVA HQ CYGI  VP   WFCD C    A                 A  + PRCQLC  RG  A KR+  G W H+ C LW PE  +E      L    L+RLDPDR++L C++C    G   +QCA   CL A H  CA
Sbjct: 1225 CSVCLESESYDDDPIVFCDG--CNVAVHQFCYGIRVVPKDKWFCDVCTETRAGV-------------NEAKPNQPRCQLCPHRGG-AYKRTTCGQWIHVQCFLWIPEFRVEQGDNDMLVLGELNRLDPDRKTLDCSLCHSTKGNGIIQCAHKRCLTAFHVSCA 1371
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A8B6BKQ7_MYTGA (Uncharacterized protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BKQ7_MYTGA)

HSP 1 Score: 113 bits (282), Expect = 1.030e-24
Identity = 71/197 (36.04%), Postives = 92/197 (46.70%), Query Frame = 1 
Query:   64 VGACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGA-ALAPAGLDRLDPDRESLTCAVC-------LGHGGAAVQCAVPECLVAMHPFCARDTAGYLLEASEE-----SYALYCKKH 615
            VG C VC  E  W ++P++ CDG GCNVA HQ CYGI  VP G WFC  C+ +                 + AAR   +C+LC+Q+   A+KR+  G WCH+VC L+ PE W      + P  L  L  +R +  C VC           GA +QC    C    H  CA+   G L E +        Y  YC  H
Sbjct:    9 VGGCCVCSDERGWAENPLVYCDGQGCNVAVHQACYGIVQVPTGPWFCRKCESQ-----------------ERAARV--KCELCQQKDG-ALKRTDSGGWCHVVCALFIPEAWFANVQTMEPIVLKNLPQERFNKICYVCEEKDRASKASTGACMQCNKNGCKQYFHVTCAQ-AQGLLCEEAGNYGDNVKYCGYCDYH 184
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: UPI001F07364F (protein AF-10 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07364F)

HSP 1 Score: 114 bits (286), Expect = 1.760e-24
Identity = 73/200 (36.50%), Postives = 97/200 (48.50%), Query Frame = 1 
Query:   64 VGACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPEL-WLEGAALAPAGLDRLDPDRESLTCAVCLGHG-------GAAVQCAVPECLVAMHPFCARDTAGYLLE-----ASEESYALYCKKHASR 624
            +G C VC  E  W ++P++ CDG GCNVA HQ CYGI  VP G WFC  C+ +                 + AAR   RC+LC  +   A+KR+  G W H+VC L+ PE+ +   + + P  L  +  DR + TC +C   G       GA + C    C  A H  CA+  AG L E     A    Y  YCK H S+
Sbjct:   23 IGGCCVCSDERGWAENPLVYCDGHGCNVAVHQACYGIVQVPTGPWFCRKCESQ-----------------ERAARV--RCELCPHKDG-ALKRTDNGGWAHVVCALYIPEVEFANVSTMEPIVLQSVPHDRYNKTCYICEDQGRESKAASGACMTCNKHGCRQAFHVTCAQ-FAGLLCEEQGSDADNVKYCGYCKYHYSK 201
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A6I9P609_9TELE (protein AF-10-like n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9P609_9TELE)

HSP 1 Score: 114 bits (286), Expect = 1.990e-24
Identity = 73/200 (36.50%), Postives = 97/200 (48.50%), Query Frame = 1 
Query:   64 VGACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPEL-WLEGAALAPAGLDRLDPDRESLTCAVCLGHG-------GAAVQCAVPECLVAMHPFCARDTAGYLLE-----ASEESYALYCKKHASR 624
            +G C VC  E  W ++P++ CDG GCNVA HQ CYGI  VP G WFC  C+ +                 + AAR   RC+LC  +   A+KR+  G W H+VC L+ PE+ +   + + P  L  +  DR + TC +C   G       GA + C    C  A H  CA+  AG L E     A    Y  YCK H S+
Sbjct:   23 IGGCCVCSDERGWAENPLVYCDGHGCNVAVHQACYGIVQVPTGPWFCRKCESQ-----------------ERAARV--RCELCPHKDG-ALKRTDNGGWAHVVCALYIPEVEFANVSTMEPIVLQSVPHDRYNKTCYICEDQGRESKAATGACMTCNKHGCRQAFHVTCAQ-FAGLLCEEQGSDADNVKYCGYCKYHHSK 201
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A8D2P1M0_ZOSLA (Uncharacterized protein n=1 Tax=Zosterops lateralis melanops TaxID=1220523 RepID=A0A8D2P1M0_ZOSLA)

HSP 1 Score: 112 bits (281), Expect = 3.230e-24
Identity = 72/197 (36.55%), Postives = 94/197 (47.72%), Query Frame = 1 
Query:   64 VGACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGAA-LAPAGLDRLDPDRESLTCAVCLGHG-------GAAVQCAVPECLVAMHPFCARDTAGYLLE-----ASEESYALYCKKH 615
            +G C VC  E  W ++P++ CDG GCNVA HQ CYGI  VP G WFC  C+ +                 + AAR   RC+LC  +   A+KR+  G W H+VC L+ PE+     + + P  L  +  DR + TC +C   G       GA + C    C  A H  CA+  AG L E     A    Y  YCK H
Sbjct:    5 IGGCCVCSDERGWAENPLVYCDGHGCNVAVHQACYGIVQVPTGPWFCRKCESQ-----------------ERAARV--RCELCPHKDG-ALKRTDNGGWAHVVCALYIPEVQFANVSTMEPIVLQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQAFHVTCAQ-FAGLLCEEEGNGADNVQYCGYCKYH 180
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: A0A8C3UMN3_CATUS (MLLT6, PHD finger containing n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UMN3_CATUS)

HSP 1 Score: 114 bits (284), Expect = 4.020e-24
Identity = 74/200 (37.00%), Postives = 95/200 (47.50%), Query Frame = 1 
Query:   64 VGACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWLEGA-ALAPAGLDRLDPDRESLTCAVCLGHG-------GAAVQCAVPECLVAMHPFCARDTAGYL-----LEASEESYALYCKKHASR 624
            VG C VC  E  W ++P++ CDG GCNVA HQ CYGI  VP G WFC  C+ +                 + AAR   RC+LC  +   A+KR+  G W H+VC L+ PE+       + P  L  +  DR + TC +C   G       GA + C    C  A H  CA+  AG L     LE     Y  YCK H S+
Sbjct:    5 VGGCCVCSDERGWAENPLVYCDGHGCNVAVHQACYGIVQVPTGPWFCRKCESQ-----------------ERAARV--RCELCPHKDG-ALKRTDNGGWAHVVCALYIPEVQFANVLTMEPIVLQYVPHDRFNKTCYICEEQGRESKAASGACMACNRHGCRQAFHVTCAQ-MAGLLCEEEVLEVDNVKYCGYCKYHFSK 183
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BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Match: UPI001884F574 (protein AF-10-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884F574)

HSP 1 Score: 120 bits (300), Expect = 4.840e-24
Identity = 74/203 (36.45%), Postives = 104/203 (51.23%), Query Frame = 1 
Query:   64 VGACNVCGGEDSWEDDPILLCDGAGCNVAAHQNCYGIEAVPAGDWFCDACQVRAAXXXXXXXXXXXXXXRKAAARSAPRCQLCRQRGKLAMKRSAGGTWCHLVCVLWTPELWL-EGAALAPAGLDRLDPDRESLTCAVCLGHG-------GAAVQCAVPECLVAMHPFCARDTAGYLLEASEES-----YALYCKKHASRRRR 633
            VG C VC  E  W+++P++ CDG GCNVA HQ CYGI +VP G WFC  C+ +                 + AAR   RC+LC  +G  A+KR+    W H+VC L+ PE+   + A + P  +  + PDR S +C +C  HG       GA + C  P C ++ H  CA+   G L E   +S     Y  YC  H ++ +R
Sbjct:   18 VGGCCVCSDESGWDENPLVYCDGDGCNVAVHQACYGIVSVPPGPWFCRKCESQ-----------------ERAARV--RCELCPSKGG-ALKRTDQNGWAHVVCALYIPEVRFGDVATMEPILVSIVPPDRFSKSCCLCELHGRASKAQAGACMSCNKPGCRLSFHVTCAQGH-GLLCEEQVQSMNNVTYCGYCPHHYAKLKR 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662WMH0_9STRA6.820e-2743.90Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A329SCB6_9STRA1.000e-2543.37Fanconi anemia group M protein n=2 Tax=Phytophthor... [more]
A0A833SYU5_PHYIN3.850e-2543.90PHD-zinc-finger like domain n=1 Tax=Phytophthora i... [more]
W2QKT9_PHYPN8.520e-2543.56Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A8B6BKQ7_MYTGA1.030e-2436.04Uncharacterized protein n=2 Tax=Mytilus galloprovi... [more]
UPI001F07364F1.760e-2436.50protein AF-10 n=1 Tax=Hypomesus transpacificus Tax... [more]
A0A6I9P609_9TELE1.990e-2436.50protein AF-10-like n=1 Tax=Notothenia coriiceps Ta... [more]
A0A8D2P1M0_ZOSLA3.230e-2436.55Uncharacterized protein n=1 Tax=Zosterops laterali... [more]
A0A8C3UMN3_CATUS4.020e-2437.00MLLT6, PHD finger containing n=1 Tax=Catharus ustu... [more]
UPI001884F5744.840e-2436.45protein AF-10-like n=1 Tax=Pollicipes pollicipes T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1454contigP-wetherbeei_contig1454:483..4692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP48
Preferred nameFANCM
PFAMsDEAD,ERCC4,FANCM-MHF_bd,Helicase_C,ResIII,zf-HC5HC2H_2
Model size4210
Max annot lvl2759|Eukaryota
KEGG koko:K10896
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0031297,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045003,GO:0045005,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071821,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1903046
Exons1
Evalue4.02e-16
EggNOG OGsCOG1111@1|root,COG5141@1|root,KOG0354@2759|Eukaryota,KOG0955@2759|Eukaryota
Descriptionchromatin organization
Cds size3756
COG categoryP
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.3383703-UTR-P-wetherbeei_contig1454:482..8151683186025.3383703-UTR-P-wetherbeei_contig1454:482..815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1454 483..815 +
1683186025.3656723-UTR-P-wetherbeei_contig1454:4571..46921683186025.3656723-UTR-P-wetherbeei_contig1454:4571..4692Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1454 4572..4692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.3503208-CDS-P-wetherbeei_contig1454:815..45711683186025.3503208-CDS-P-wetherbeei_contig1454:815..4571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1454 816..4571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1454.1.1prot_P-wetherbeei_contig1454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1454 816..4571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1454.1.1

>prot_P-wetherbeei_contig1454.1.1 ID=prot_P-wetherbeei_contig1454.1.1|Name=mRNA_P-wetherbeei_contig1454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1252bp
MKRSAGGTWCHLVCVLWTPELWLEGAALAPAGLDRLDPDRESLTCAVCLG
HGGAAVQCAVPECLVAMHPFCARDTAGYLLEASEESYALYCKKHASRRRR
ELRLEAQSAGGGGGSGSSAVVRVKDDDGCHGSTAATAEAAAAAAIAAAGP
EGRGRYGDVGWTMKPAIVDQDAVGFRVDDDEESPAVPPAPRGRGHRPHNR
IVADDNEVDASGAVGSPAAPALVAADAPAPPRAVHAMGLPPAAAKDATAL
PQRARRASEGGTTLSAPGSAVKGGDDGGHALFTLSQAQSPLNGGRGAAQS
QRKRLRRGAEGKENGGGGGTNSRATVKAKPAAAAPEAAVAAARVAAAAVA
RGKGQAGGGGGRVGKGRRPFGSAIMRFIDDEAEVEEGDASDDDEALVDEF
FGSQDSFINDGDISVDTAADGLDDDNDEDEEVEATGGGGEAPGSGGSSAT
PRGRKQRRRLPLDDEGMYRRMHGRLVEDSPDAPLLRPRGAGGGSGRHLGF
IAAVIAHHEEGGRPEDLEAAYREAGGGGMTQATAETPASESSDDNDDENG
GDGGGQAWTQYSPIRPGLLRVADGERRGGGDGSDGKDGGAGDGRGSRAGK
GGASASGGSKGGGGARGGDAAAKRSESAAPPPSRGAAVAGMRAAHDIARD
SAPITRFPPGVKAQPRRCSSNDYAGGAGSGGSVGGGGAGAGGGGVAVHGG
AQRSNPYARSRVAPAPASFSGASVGSAAQQSTPLPTNAYSQQQHPPSPPP
RPQQTQPKEPPAAASLPAVAAASLVPSPASAVPAVPTDDCGAAVAAAAAT
AAAAAVTEEQRRRMEENRRRALQRLEEARRSKQLQQQQQQQHPLPLLQQG
AAGARAGAGPEPAVAGSGRLQQSPPLLLPPRAAGSFTLAVNFGDEDSGDD
DSGGSAPTVKSGHGGCSAPAAGIRQPVPPPAVSAPSPAPPQEQSGPLLAA
TVAAAMAAAGPRRLLQLAPPPRRSDLSSMTLPVAPRHVQSAFGAALRAET
GCAVDGSSPLEHDVIDAVAGVQLAVCIRTRTAFVQEVESRAIMPVLAAVL
QYYGGVAILVVPDEKAGGCGAAATALRTSAGRPPAQPVNDARYRMAYSVA
AAVEGVRVMSIAAGDLRTAARTLAGLVWGEDEKGLGLRRPSSSPVSTGGG
SSSGGAVAGAGTGGAAGLTPVQRKAADLLRHAPGLSLVAALRLVDAFRGR
KLNDIVRSTEVELRAAVPGLTAARAYAILQFWKQWGFGGGDTPAAVTLRR
R*
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mRNA from alignment at P-wetherbeei_contig1454:483..4692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1454.1.1 ID=mRNA_P-wetherbeei_contig1454.1.1|Name=mRNA_P-wetherbeei_contig1454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4210bp|location=Sequence derived from alignment at P-wetherbeei_contig1454:483..4692+ (Phaeothamnion wetherbeei SAG_119_79)
GATGATGGAAACGGCAGCAGCAGCAGCGGCGACGAATTCGGCAACAGCGC
CGACGCGAGTGACGTGGGCGCCTGCAACGTGTGCGGCGGCGAAGACTCCT
GGGAGGATGACCCGATCCTGCTGTGCGACGGCGCGGGCTGCAACGTGGCG
GCCCACCAAAACTGCTACGGCATCGAGGCGGTGCCGGCCGGGGACTGGTT
CTGCGATGCCTGCCAGGTCCGTGCGGCCGCTGGCGGCAGCAGCAGCGCCA
GCGGCGGCGGCAGCGTGGTGCGCAAGGCCGCCGCCCGCTCCGCGCCGCGC
TGCCAGCTCTGCCGCCAGCGCGGGAAGCTCGCCATGAAGCGTTCCGCCGG
CGGGACGTGGTGCCACCTGGTCTGCGTGCTCTGGACGCCGGAGCTGTGGC
TGGAGGGCGCCGCGCTCGCGCCGGCGGGGCTCGACCGTCTCGACCCTGAC
CGCGAGAGTCTGACCTGCGCCGTCTGCCTCGGCCATGGCGGCGCAGCGGT
GCAGTGCGCCGTGCCGGAGTGCCTGGTGGCGATGCACCCGTTCTGCGCAC
GGGACACCGCGGGCTACCTCCTCGAGGCGAGCGAGGAGAGCTACGCGCTC
TACTGCAAGAAGCATGCGTCGAGGCGCCGCCGGGAGCTGCGCCTGGAAGC
GCAATCGGCTGGCGGCGGCGGTGGCAGCGGCAGCAGCGCCGTTGTTCGAG
TCAAGGACGATGACGGCTGCCATGGCAGCACCGCTGCCACCGCCGAAGCC
GCTGCTGCCGCTGCTATTGCTGCGGCCGGTCCGGAGGGCAGAGGCCGTTA
TGGTGACGTCGGCTGGACCATGAAGCCGGCCATAGTGGATCAGGACGCCG
TGGGATTTCGCGTTGACGACGACGAGGAGTCTCCGGCGGTGCCTCCAGCA
CCGCGAGGCCGCGGCCACCGGCCCCACAATCGGATCGTGGCGGACGACAA
TGAGGTCGACGCTTCGGGAGCCGTCGGGTCTCCGGCGGCTCCAGCGTTGG
TGGCCGCGGACGCTCCTGCGCCGCCGCGGGCGGTTCACGCCATGGGACTT
CCGCCGGCTGCGGCCAAGGACGCGACGGCGCTGCCGCAGCGCGCCCGCCG
CGCCTCGGAGGGAGGCACGACGTTGTCTGCGCCAGGAAGCGCCGTCAAGG
GCGGCGACGACGGCGGCCACGCGCTCTTCACGCTGTCACAGGCGCAGAGC
CCGCTCAATGGCGGCCGCGGCGCCGCGCAGTCGCAGCGCAAGCGGCTGCG
GAGGGGGGCTGAGGGGAAGGAGAATGGGGGCGGTGGAGGCACCAACAGCC
GCGCTACGGTAAAGGCGAAGCCGGCGGCAGCAGCCCCAGAAGCAGCAGTG
GCGGCCGCTAGAGTGGCGGCGGCGGCGGTGGCGCGGGGCAAAGGCCAGGC
TGGCGGCGGCGGCGGCAGGGTGGGCAAGGGCCGCCGCCCGTTCGGCAGCG
CCATCATGCGCTTCATCGACGACGAGGCGGAGGTGGAGGAGGGAGACGCT
TCAGACGACGACGAGGCGCTGGTTGACGAGTTTTTCGGCAGCCAGGACAG
CTTCATCAACGACGGCGACATTTCCGTCGACACTGCTGCCGACGGCCTTG
ACGATGATAATGACGAGGACGAAGAAGTGGAGGCGACTGGTGGCGGCGGC
GAGGCGCCGGGCTCCGGCGGGAGCTCGGCGACGCCGCGCGGCCGGAAGCA
GCGCCGGCGGCTGCCGCTGGACGATGAGGGCATGTACCGGCGGATGCATG
GCCGCCTAGTGGAGGACAGCCCGGACGCGCCGCTCCTGCGGCCGCGCGGC
GCCGGCGGCGGCAGCGGGCGGCATCTCGGCTTCATCGCGGCCGTCATTGC
GCACCATGAGGAGGGCGGGCGGCCCGAGGACCTCGAGGCGGCATACCGCG
AAGCGGGCGGCGGGGGGATGACGCAGGCCACGGCTGAAACGCCCGCCAGC
GAGAGCAGCGACGACAACGACGACGAGAACGGTGGCGACGGCGGCGGCCA
GGCGTGGACGCAGTACTCGCCAATCCGGCCGGGCCTGCTGCGGGTGGCGG
ACGGCGAGCGCCGCGGCGGCGGCGACGGCAGCGATGGCAAAGACGGCGGC
GCTGGCGATGGCCGCGGCAGTCGCGCCGGAAAGGGTGGTGCCAGCGCCAG
CGGCGGCAGCAAGGGCGGCGGCGGCGCTCGTGGTGGGGATGCGGCGGCGA
AGAGGAGCGAGTCGGCTGCCCCACCTCCATCGCGCGGGGCAGCAGTTGCG
GGTATGCGGGCAGCGCATGACATCGCTCGCGATTCAGCGCCAATTACTAG
GTTTCCGCCGGGAGTAAAAGCGCAGCCTCGCCGTTGTTCCAGCAATGATT
ACGCTGGCGGCGCTGGCAGCGGTGGCAGTGTTGGTGGCGGCGGCGCCGGC
GCGGGCGGCGGCGGCGTTGCGGTCCATGGAGGCGCGCAGCGATCGAATCC
ATATGCCCGCTCACGGGTCGCGCCGGCGCCGGCATCTTTCAGCGGGGCAT
CAGTTGGAAGTGCTGCTCAGCAGTCTACCCCGCTTCCCACCAACGCTTAC
TCGCAGCAGCAGCATCCGCCGTCGCCGCCGCCGCGACCGCAGCAGACGCA
GCCAAAGGAACCACCGGCAGCCGCTTCGCTTCCGGCGGTAGCGGCTGCCT
CACTAGTTCCATCTCCCGCCAGCGCGGTGCCGGCAGTCCCGACGGATGAC
TGTGGGGCTGCGGTAGCCGCAGCGGCAGCGACGGCGGCGGCGGCGGCCGT
AACAGAGGAGCAGCGGCGCCGAATGGAGGAGAACCGGCGCCGCGCTTTGC
AGCGGTTGGAGGAGGCGCGACGCAGCAAGCAGCTGCAGCAGCAACAACAG
CAGCAGCATCCTCTGCCACTGCTGCAACAAGGAGCTGCGGGAGCTCGAGC
CGGCGCAGGGCCGGAGCCTGCTGTAGCAGGGTCAGGACGCCTGCAGCAAA
GCCCGCCGCTGCTGCTTCCGCCGCGGGCAGCGGGATCGTTTACGCTCGCC
GTCAACTTTGGCGACGAGGACAGCGGTGACGATGACAGTGGCGGGTCCGC
GCCAACGGTAAAGTCGGGTCACGGGGGCTGTTCTGCCCCTGCAGCAGGCA
TTCGCCAGCCCGTGCCGCCGCCAGCGGTATCTGCGCCGTCGCCGGCGCCG
CCACAAGAGCAAAGCGGGCCGCTTCTTGCGGCAACGGTGGCGGCGGCGAT
GGCGGCGGCGGGCCCCCGCCGACTGTTGCAGCTGGCACCGCCGCCGCGGC
GGTCGGACCTCTCCTCCATGACGCTGCCCGTCGCGCCGCGGCACGTACAG
AGCGCCTTCGGGGCGGCGCTGCGCGCCGAGACGGGTTGTGCCGTCGACGG
CTCATCGCCGCTGGAGCACGACGTCATCGACGCCGTCGCCGGAGTACAAC
TTGCGGTTTGCATCCGGACCCGCACCGCCTTCGTTCAGGAGGTCGAATCG
CGTGCGATTATGCCGGTGCTCGCGGCGGTGCTGCAGTACTACGGGGGCGT
CGCCATTCTCGTTGTGCCGGATGAAAAGGCCGGCGGCTGTGGCGCTGCTG
CAACGGCGTTGAGAACATCAGCGGGCCGGCCTCCGGCGCAGCCCGTAAAC
GACGCGCGCTATCGCATGGCGTACAGCGTAGCGGCGGCCGTGGAGGGCGT
CCGGGTAATGTCCATCGCCGCCGGGGACCTGCGGACGGCCGCCCGGACCC
TGGCCGGACTTGTGTGGGGCGAGGACGAGAAGGGCCTCGGACTGCGGCGG
CCTTCTTCCTCCCCCGTTTCCACCGGCGGAGGGTCCAGCTCCGGAGGCGC
TGTCGCCGGAGCTGGAACCGGTGGGGCGGCGGGGCTGACGCCAGTGCAAC
GCAAAGCCGCTGACCTGCTGCGGCACGCGCCGGGCCTGAGCCTGGTGGCG
GCACTGCGGCTCGTCGACGCCTTTCGGGGCCGGAAACTCAACGATATCGT
GCGCAGCACCGAGGTGGAGCTGCGCGCGGCGGTGCCAGGGCTGACGGCTG
CGCGGGCGTATGCCATCCTGCAGTTTTGGAAGCAGTGGGGCTTTGGCGGC
GGTGACACTCCGGCGGCGGTGACACTCCGGCGGCGGTGACACTCCGGCGG
CAGCGGATGCGATGACCGTGGAGCGTTTGCCATGCAGGTGCCTGCACGTC
TAATACAGCAGCTCAAACAATTAGTGTACAAGAGAGAAATAGAAATGTAA
ATGCCATAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1454:483..4692+

>mRNA_P-wetherbeei_contig1454.1.1 ID=mRNA_P-wetherbeei_contig1454.1.1|Name=mRNA_P-wetherbeei_contig1454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3756bp|location=Sequence derived from alignment at P-wetherbeei_contig1454:483..4692+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGTTCCGCCGGCGGGACGTGGTGCCACCTGGTCTGCGTGCTCTG
GACGCCGGAGCTGTGGCTGGAGGGCGCCGCGCTCGCGCCGGCGGGGCTCG
ACCGTCTCGACCCTGACCGCGAGAGTCTGACCTGCGCCGTCTGCCTCGGC
CATGGCGGCGCAGCGGTGCAGTGCGCCGTGCCGGAGTGCCTGGTGGCGAT
GCACCCGTTCTGCGCACGGGACACCGCGGGCTACCTCCTCGAGGCGAGCG
AGGAGAGCTACGCGCTCTACTGCAAGAAGCATGCGTCGAGGCGCCGCCGG
GAGCTGCGCCTGGAAGCGCAATCGGCTGGCGGCGGCGGTGGCAGCGGCAG
CAGCGCCGTTGTTCGAGTCAAGGACGATGACGGCTGCCATGGCAGCACCG
CTGCCACCGCCGAAGCCGCTGCTGCCGCTGCTATTGCTGCGGCCGGTCCG
GAGGGCAGAGGCCGTTATGGTGACGTCGGCTGGACCATGAAGCCGGCCAT
AGTGGATCAGGACGCCGTGGGATTTCGCGTTGACGACGACGAGGAGTCTC
CGGCGGTGCCTCCAGCACCGCGAGGCCGCGGCCACCGGCCCCACAATCGG
ATCGTGGCGGACGACAATGAGGTCGACGCTTCGGGAGCCGTCGGGTCTCC
GGCGGCTCCAGCGTTGGTGGCCGCGGACGCTCCTGCGCCGCCGCGGGCGG
TTCACGCCATGGGACTTCCGCCGGCTGCGGCCAAGGACGCGACGGCGCTG
CCGCAGCGCGCCCGCCGCGCCTCGGAGGGAGGCACGACGTTGTCTGCGCC
AGGAAGCGCCGTCAAGGGCGGCGACGACGGCGGCCACGCGCTCTTCACGC
TGTCACAGGCGCAGAGCCCGCTCAATGGCGGCCGCGGCGCCGCGCAGTCG
CAGCGCAAGCGGCTGCGGAGGGGGGCTGAGGGGAAGGAGAATGGGGGCGG
TGGAGGCACCAACAGCCGCGCTACGGTAAAGGCGAAGCCGGCGGCAGCAG
CCCCAGAAGCAGCAGTGGCGGCCGCTAGAGTGGCGGCGGCGGCGGTGGCG
CGGGGCAAAGGCCAGGCTGGCGGCGGCGGCGGCAGGGTGGGCAAGGGCCG
CCGCCCGTTCGGCAGCGCCATCATGCGCTTCATCGACGACGAGGCGGAGG
TGGAGGAGGGAGACGCTTCAGACGACGACGAGGCGCTGGTTGACGAGTTT
TTCGGCAGCCAGGACAGCTTCATCAACGACGGCGACATTTCCGTCGACAC
TGCTGCCGACGGCCTTGACGATGATAATGACGAGGACGAAGAAGTGGAGG
CGACTGGTGGCGGCGGCGAGGCGCCGGGCTCCGGCGGGAGCTCGGCGACG
CCGCGCGGCCGGAAGCAGCGCCGGCGGCTGCCGCTGGACGATGAGGGCAT
GTACCGGCGGATGCATGGCCGCCTAGTGGAGGACAGCCCGGACGCGCCGC
TCCTGCGGCCGCGCGGCGCCGGCGGCGGCAGCGGGCGGCATCTCGGCTTC
ATCGCGGCCGTCATTGCGCACCATGAGGAGGGCGGGCGGCCCGAGGACCT
CGAGGCGGCATACCGCGAAGCGGGCGGCGGGGGGATGACGCAGGCCACGG
CTGAAACGCCCGCCAGCGAGAGCAGCGACGACAACGACGACGAGAACGGT
GGCGACGGCGGCGGCCAGGCGTGGACGCAGTACTCGCCAATCCGGCCGGG
CCTGCTGCGGGTGGCGGACGGCGAGCGCCGCGGCGGCGGCGACGGCAGCG
ATGGCAAAGACGGCGGCGCTGGCGATGGCCGCGGCAGTCGCGCCGGAAAG
GGTGGTGCCAGCGCCAGCGGCGGCAGCAAGGGCGGCGGCGGCGCTCGTGG
TGGGGATGCGGCGGCGAAGAGGAGCGAGTCGGCTGCCCCACCTCCATCGC
GCGGGGCAGCAGTTGCGGGTATGCGGGCAGCGCATGACATCGCTCGCGAT
TCAGCGCCAATTACTAGGTTTCCGCCGGGAGTAAAAGCGCAGCCTCGCCG
TTGTTCCAGCAATGATTACGCTGGCGGCGCTGGCAGCGGTGGCAGTGTTG
GTGGCGGCGGCGCCGGCGCGGGCGGCGGCGGCGTTGCGGTCCATGGAGGC
GCGCAGCGATCGAATCCATATGCCCGCTCACGGGTCGCGCCGGCGCCGGC
ATCTTTCAGCGGGGCATCAGTTGGAAGTGCTGCTCAGCAGTCTACCCCGC
TTCCCACCAACGCTTACTCGCAGCAGCAGCATCCGCCGTCGCCGCCGCCG
CGACCGCAGCAGACGCAGCCAAAGGAACCACCGGCAGCCGCTTCGCTTCC
GGCGGTAGCGGCTGCCTCACTAGTTCCATCTCCCGCCAGCGCGGTGCCGG
CAGTCCCGACGGATGACTGTGGGGCTGCGGTAGCCGCAGCGGCAGCGACG
GCGGCGGCGGCGGCCGTAACAGAGGAGCAGCGGCGCCGAATGGAGGAGAA
CCGGCGCCGCGCTTTGCAGCGGTTGGAGGAGGCGCGACGCAGCAAGCAGC
TGCAGCAGCAACAACAGCAGCAGCATCCTCTGCCACTGCTGCAACAAGGA
GCTGCGGGAGCTCGAGCCGGCGCAGGGCCGGAGCCTGCTGTAGCAGGGTC
AGGACGCCTGCAGCAAAGCCCGCCGCTGCTGCTTCCGCCGCGGGCAGCGG
GATCGTTTACGCTCGCCGTCAACTTTGGCGACGAGGACAGCGGTGACGAT
GACAGTGGCGGGTCCGCGCCAACGGTAAAGTCGGGTCACGGGGGCTGTTC
TGCCCCTGCAGCAGGCATTCGCCAGCCCGTGCCGCCGCCAGCGGTATCTG
CGCCGTCGCCGGCGCCGCCACAAGAGCAAAGCGGGCCGCTTCTTGCGGCA
ACGGTGGCGGCGGCGATGGCGGCGGCGGGCCCCCGCCGACTGTTGCAGCT
GGCACCGCCGCCGCGGCGGTCGGACCTCTCCTCCATGACGCTGCCCGTCG
CGCCGCGGCACGTACAGAGCGCCTTCGGGGCGGCGCTGCGCGCCGAGACG
GGTTGTGCCGTCGACGGCTCATCGCCGCTGGAGCACGACGTCATCGACGC
CGTCGCCGGAGTACAACTTGCGGTTTGCATCCGGACCCGCACCGCCTTCG
TTCAGGAGGTCGAATCGCGTGCGATTATGCCGGTGCTCGCGGCGGTGCTG
CAGTACTACGGGGGCGTCGCCATTCTCGTTGTGCCGGATGAAAAGGCCGG
CGGCTGTGGCGCTGCTGCAACGGCGTTGAGAACATCAGCGGGCCGGCCTC
CGGCGCAGCCCGTAAACGACGCGCGCTATCGCATGGCGTACAGCGTAGCG
GCGGCCGTGGAGGGCGTCCGGGTAATGTCCATCGCCGCCGGGGACCTGCG
GACGGCCGCCCGGACCCTGGCCGGACTTGTGTGGGGCGAGGACGAGAAGG
GCCTCGGACTGCGGCGGCCTTCTTCCTCCCCCGTTTCCACCGGCGGAGGG
TCCAGCTCCGGAGGCGCTGTCGCCGGAGCTGGAACCGGTGGGGCGGCGGG
GCTGACGCCAGTGCAACGCAAAGCCGCTGACCTGCTGCGGCACGCGCCGG
GCCTGAGCCTGGTGGCGGCACTGCGGCTCGTCGACGCCTTTCGGGGCCGG
AAACTCAACGATATCGTGCGCAGCACCGAGGTGGAGCTGCGCGCGGCGGT
GCCAGGGCTGACGGCTGCGCGGGCGTATGCCATCCTGCAGTTTTGGAAGC
AGTGGGGCTTTGGCGGCGGTGACACTCCGGCGGCGGTGACACTCCGGCGG
CGGTGA
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