mRNA_P-wetherbeei_contig14539.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14539.2.1
Unique NamemRNA_P-wetherbeei_contig14539.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14539.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14539contigP-wetherbeei_contig14539:1002..1659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size611
Hectar predicted targeting categoryother localisation
Exons2
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.2826684-UTR-P-wetherbeei_contig14539:1001..11781683186025.2826684-UTR-P-wetherbeei_contig14539:1001..1178Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14539 1002..1178 +
1683186025.3085647-UTR-P-wetherbeei_contig14539:1633..16591683186025.3085647-UTR-P-wetherbeei_contig14539:1633..1659Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14539 1634..1659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.2911134-CDS-P-wetherbeei_contig14539:1178..11981683186025.2911134-CDS-P-wetherbeei_contig14539:1178..1198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14539 1179..1198 +
1683186025.299321-CDS-P-wetherbeei_contig14539:1245..16331683186025.299321-CDS-P-wetherbeei_contig14539:1245..1633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14539 1246..1633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14539.2.1prot_P-wetherbeei_contig14539.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14539 1179..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14539.2.1

>prot_P-wetherbeei_contig14539.2.1 ID=prot_P-wetherbeei_contig14539.2.1|Name=mRNA_P-wetherbeei_contig14539.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MAMAFGHLDMCFRATILGQKPLTETAVNDPHPISIQPALAAATKEMGTDV
DTLLNQAVEDYETNPQASADPNLAAGKVAASVFQPIPAETAQFQSKFAAL
GLAPDASDALISGLVMNAVSRSRPSALDSTSLLAR*
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mRNA from alignment at P-wetherbeei_contig14539:1002..1659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14539.2.1 ID=mRNA_P-wetherbeei_contig14539.2.1|Name=mRNA_P-wetherbeei_contig14539.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=658bp|location=Sequence derived from alignment at P-wetherbeei_contig14539:1002..1659+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGTTCCGGCCTTCTACGGTACGGCCATCGTGGAGCTCAGTAGCCCGGG
TTCCGAAGAATACATCAGCTCGCCCGAGTTTCAGCAGGGTCTCAAGCTTT
CACAGGCTCTGCGCGTTAAATCCGCCGATCAGCAGAAATTCGTCGGGGAG
CTCAGCAATCGCGAGGTTGACGTAAAAATGGCGATGGCATTCGGCCAGTA
AATGGTGCTCGGCGCTCTAGCCAGTCAGCTCTGAATGGCTAGAGCCTGGA
TATGTGCTTTCGCGCAACTATTCTGGGTCAAAAGCCTCTCACCGAAACGG
CCGTCAACGACCCACATCCGATTTCGATTCAGCCGGCTCTCGCAGCGGCT
ACTAAGGAGATGGGCACGGACGTGGACACCTTGTTGAATCAGGCTGTCGA
AGACTACGAAACCAATCCGCAAGCCAGCGCCGATCCAAATCTGGCGGCGG
GAAAGGTAGCGGCCTCAGTCTTTCAGCCTATCCCTGCCGAGACCGCTCAG
TTTCAGTCCAAATTTGCAGCTTTGGGACTTGCCCCCGACGCCAGCGACGC
TCTGATTTCGGGCCTGGTTATGAACGCGGTTTCTCGGAGCCGACCTTCCG
CCCTGGACTCAACGTCGCTCTTAGCCAGGTGATGGAGCAGACGCAGGACA
ATCTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14539:1002..1659+

>mRNA_P-wetherbeei_contig14539.2.1 ID=mRNA_P-wetherbeei_contig14539.2.1|Name=mRNA_P-wetherbeei_contig14539.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig14539:1002..1659+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGATGGCATTCGGCCACCTGGATATGTGCTTTCGCGCAACTATTCT
GGGTCAAAAGCCTCTCACCGAAACGGCCGTCAACGACCCACATCCGATTT
CGATTCAGCCGGCTCTCGCAGCGGCTACTAAGGAGATGGGCACGGACGTG
GACACCTTGTTGAATCAGGCTGTCGAAGACTACGAAACCAATCCGCAAGC
CAGCGCCGATCCAAATCTGGCGGCGGGAAAGGTAGCGGCCTCAGTCTTTC
AGCCTATCCCTGCCGAGACCGCTCAGTTTCAGTCCAAATTTGCAGCTTTG
GGACTTGCCCCCGACGCCAGCGACGCTCTGATTTCGGGCCTGGTTATGAA
CGCGGTTTCTCGGAGCCGACCTTCCGCCCTGGACTCAACGTCGCTCTTAG
CCAGGTGA
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