mRNA_P-wetherbeei_contig14497.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A7X1NZU3_9PROT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1NZU3_9PROT) HSP 1 Score: 311 bits (797), Expect = 7.070e-101 Identity = 163/265 (61.51%), Postives = 205/265 (77.36%), Query Frame = 1
Query: 4 RDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVREGKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVREPGDEKGKGK 798
RD+AQLAQA+ QE RLR L+ K+YITR ++DVAAT KSLEA V AN A L QAQL L+Y+ I API+GRTGSL V GNLV+ GTGGSPLVVINST+PI VA+ VPQR LDDVR+ W + DLKV+I+ + G + EG L+FIDN VNP TGT+LLKA NEKE+LWPGQF+AARI+L++E DA+VLPEGA+QPGQ+ PFV+V +G+A ++ V V RQIG +VVI QGL G+E+++++VP L S VV+ E G+GK
Sbjct: 129 RDEAQLAQARAQEERLRSLVDKDYITRQEYDVAATSAKSLEATVNANRAALDQAQLHLAYSRIVAPISGRTGSLGVRAGNLVSAGTGGSPLVVINSTRPILVAIPVPQRHLDDVRKQWGSLDLKVEIAADRGEQTLVEGRLIFIDNAVNPATGTILLKAEVPNEKEQLWPGQFLAARIVLRIEPDAMVLPEGAIQPGQEGPFVFVAADGRARVKDVVVDRQIGEQVVIAQGLEGNERIIIEVPPTLAANSPVVLA---GESGRGK 390
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A1F4DHU7_9PROT (HlyD_D23 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DHU7_9PROT) HSP 1 Score: 266 bits (681), Expect = 1.760e-83 Identity = 146/269 (54.28%), Postives = 189/269 (70.26%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGT--GGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVR-EGKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVREPGDEKGKGK 798
ARD+AQL A+ Q+ RL PL+++E+ITR ++DVA T KSLEA + AN A +QA++QL Y I APIAGRTG+LAV GNLV G GG+PLV INST PI V+ SVP+R L+++RRY N +++++I + GP AEG LVFIDNT+ P TGTVLLK R N E LWPGQF RI+LK+E +A+V+PE AVQPGQD FVY++ E K ++ VKVSRQIGN VVI G+ + V+ ++P AL G+ V + D KG GK
Sbjct: 130 ARDKAQLENARAQQERLEPLLKREFITRQEYDVAVTSTKSLEATMQANQAAAEQARIQLEYTRIHAPIAGRTGALAVKPGNLVAAGASGGGAPLVTINSTDPILVSFSVPERQLEEIRRYQNEKEMRIEILPDRAGPAAAEGKLVFIDNTITPQTGTVLLKTRVDNRDEVLWPGQFANVRIVLKIEPEAVVVPEAAVQPGQDGSFVYLIDPENKVQVRPVKVSRQIGNEVVIGVGIEAGDHVITEIPQALQPGATVRLAGA-DGKGGGK 397
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A1F4DGA9_9PROT (HlyD_D23 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DGA9_9PROT) HSP 1 Score: 265 bits (676), Expect = 5.080e-83 Identity = 142/269 (52.79%), Postives = 190/269 (70.63%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVR-EGKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVREPGDEKGKGKDG 804
ARD+AQL A+ Q+ RL PL+++E+ITR ++DVA T KSLEA V A+ A +QA++QL +A I+API+GRTG+LAV GNLV GG+PL+ INS PI V S+P+R L+++RRY N ++++I + G P AEG LVFIDNTV P TGTVLLK R N KE +WPGQFV RI+L VE +A+V+PE AVQPGQ+ FVY++ + K +Q VKVSRQIGN VVI G+ + V+ +VP AL G+ V + D++G G+ G
Sbjct: 113 ARDKAQLENARAQQERLEPLLKREFITRQEYDVAVTSAKSLEASVQADQAAAEQARIQLEFASIRAPISGRTGTLAVTPGNLVPAAGGGTPLITINSMDPILVGFSIPERQLEEIRRYQNEKAMRIEILPDRAGLPAAEGKLVFIDNTVTPQTGTVLLKTRVANTKELIWPGQFVNVRIVLTVEPEAVVVPEVAVQPGQEGSFVYLIDGDSKVQIQPVKVSRQIGNEVVIASGVKAGDHVITEVPQALQAGAAVRLAGADDKQGSGEKG 381
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A7C2YBS5_9PROT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YBS5_9PROT) HSP 1 Score: 262 bits (670), Expect = 6.280e-82 Identity = 143/274 (52.19%), Postives = 191/274 (69.71%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGG--SPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVV-REGKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVR------EPGDEKGKG 795
ARD+AQL A+ Q+ RL PL+++E+ITR +++VA T KSLEA + AN A +QA++QL Y I API+GRTG+LAV GNLV G GG +PLV INST P+ V+ S+P+R L+D+RRY + +++++I + G PVAEG L+FIDN V P TGTVLLK R +N E LWPGQFV RI+LK+E DA+V+PE AVQPGQ+ FVY+V E + ++ VKVSRQIG VVI G+ + V+ ++P AL G V + EP +KGKG
Sbjct: 128 ARDKAQLENARAQQERLEPLLKREFITRQEYEVAVTSTKSLEATMQANQAAAEQARIQLEYTRIHAPISGRTGALAVKPGNLVAAGAGGGGAPLVTINSTDPVLVSFSIPERQLEDIRRYQSDKEMRIEILPDRTGAPVAEGRLIFIDNAVTPQTGTVLLKTRVQNTDEVLWPGQFVNVRIVLKIEPDAVVVPEAAVQPGQEGSFVYLVDEENRVQVRPVKVSRQIGAEVVIASGIRPGDHVITEIPQALQPGGTVRIAGAEGTGEPKGKKGKG 401
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A1F4BNZ5_9PROT (HlyD_D23 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BNZ5_9PROT) HSP 1 Score: 259 bits (661), Expect = 9.990e-81 Identity = 136/254 (53.54%), Postives = 186/254 (73.23%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVRE-GKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQV 759
ARD AQL AK Q+ RL PL+++E+ITR +FDVA T KSLEA VAA+ A+++QA++Q+ ++ I +PIAGRTG+LA+ GNLV GG PLV INST PI V+ S+P+R L+++RR+ + D++++I + GP AEG LVFIDNTV P TGTVLL+ R N+ E LWPGQFV R++L++E DA+V+PE AVQPGQD FVY++ E K +Q VKV+RQ+GN VVI G+ + V+ ++P AL G+ V
Sbjct: 113 ARDMAQLENAKVQQDRLEPLLKREFITRQEFDVAVTSTKSLEATVAADRALVEQARIQVEFSRIHSPIAGRTGTLAIKPGNLVPTAGGGVPLVTINSTDPIIVSFSIPERQLEEIRRHQHEKDMRIEILPDRSGPAAAEGRLVFIDNTVTPQTGTVLLRTRVLNKDEILWPGQFVNVRVVLRIEPDAVVVPEVAVQPGQDGSFVYLIDEDSKVRVQPVKVARQVGNEVVIAAGVRPGDPVITEIPQALQPGAAV 366
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: UPI0019A96784 (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019A96784) HSP 1 Score: 224 bits (570), Expect = 1.500e-66 Identity = 126/278 (45.32%), Postives = 175/278 (62.95%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGS--PLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVREG------KAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVREPGDEKGKGKDGDG 810
ARDQA L A+ E RLRPL+++++ITR +++ A V +L+A V QL + +I+A I GR G+L+V GNLV+ T + PLV IN T P+ V+ +VPQ L VR++ + +L VQ+ G + EG LVFIDN VN TGT+++KAR N+KE LWPGQFVA R++L E +A+V+PE AVQPGQ FVYV + G +A +Q V++ RQ+G+RVVI GL+G E V+ +VP L G+ V + G+ KG GK G G
Sbjct: 137 ARDQANLELARANEKRLRPLLERDFITRAEYETTAANVAALQAQVXXXXXXXXXXXXQLDFTYIRATIDGRLGALSVRAGNLVSASTSSTSVPLVTINRTNPVLVSFNVPQEVLSTVRKFQTSGELNVQVLREQGAEVLGEGKLVFIDNNVNAQTGTIIMKARLTNDKETLWPGQFVAVRMVLTTEPEAIVVPEAAVQPGQQGSFVYVFQPGEGDAAGRARIQTVRIDRQLGDRVVIASGLNGGELVITEVPPGLAPGAPVRLPAKGEGKGAGKKGAG 414
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A1S9D3U8_9GAMM (Multidrug resistance protein MdtA n=1 Tax=Chromatiales bacterium USCg_Taylor TaxID=1934255 RepID=A0A1S9D3U8_9GAMM) HSP 1 Score: 211 bits (537), Expect = 1.810e-62 Identity = 112/230 (48.70%), Postives = 157/230 (68.26%), Query Frame = 1
Query: 70 EYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVREGKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQV 759
EYITR +++ A ++ L A V A+ A ++ +++L Y+ I+API GRTGSLAV GNLV G +PLVVI +P+ VA ++PQ +L++VRR + D++V I G VAEG +VFIDNTVNP TGTVLLKAR N + LWPG+F+ A++ILK+E DA+V+P AV+PGQ +VYVV + KA ++ V+V RQ+ + VI +GL G E V+ ++P LT G V
Sbjct: 138 EYITRQEYEQALASMEGLAATVKADRAQVEMVRVELGYSEIRAPITGRTGSLAVKEGNLVNTA-GATPLVVIMGIKPVQVAFNIPQHYLEEVRRQAESGDMRVAIYREQGRVGVAEGKVVFIDNTVNPETGTVLLKARVPNRDQALWPGEFILAQLILKIEPDAVVVPASAVRPGQKGSYVYVVDDAKARLRPVQVLRQVEDLAVIGEGLKGGELVITELPFNLTPGKAV 366
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A3N5W9N8_9PROT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5W9N8_9PROT) HSP 1 Score: 208 bits (529), Expect = 9.590e-61 Identity = 122/267 (45.69%), Postives = 160/267 (59.93%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVV-REGKAAMQAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVREPGDEKGKGK 798
ARD+AQL A+ Q+ RL PL+++E+IT+ ++DVA T KSLEA V + V GG+PLV INST PI V+ S+P+R L+++RR+ +++ I + GP VAEG+LVFIDNTV TGTVLLK R N KE +WPGQFV RI+L VE DA+V+PE AVQPGQ FVY++ E K +QAV VSRQIGN VVI G+ +QV+ ++P AL G+ V + GKGK
Sbjct: 122 ARDRAQLENARAQQQRLEPLLKREFITQQEYDVAVTSAKSLEATVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPASGGGAPLVTINSTDPILVSFSIPERQLEEIRRFQQGQGIRIGIHPDQSGPSVAEGNLVFIDNTVTAQTGTVLLKTRVDNAKEVIWPGQFVNVRIVLTVEPDAVVVPEVAVQPGQQGSFVYLIDAESKVRVQAVTVSRQIGNEVVIASGVQAGDQVITEIPQALQEGATVRLAGAEGAPGKGK 388
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A7V4U5B7_9BACT (Efflux RND transporter periplasmic adaptor subunit n=2 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V4U5B7_9BACT) HSP 1 Score: 203 bits (516), Expect = 2.220e-59 Identity = 116/258 (44.96%), Postives = 162/258 (62.79%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGPPVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVREGKAAM-QAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVRE 771
ARD AQL A+ + R L++K YI+ + FD T SLEA V A+ A+++ A+LQL Y +I +PI+G+ GSL V GNL+ +P+V+IN QPI V SVP++FL ++++Y +T +K Q+ +N EG L FI+N V+P TGT+ LK+ F N LWPGQFV IIL ++KDALV+P AV GQ FVYV++E + + V VSR I + VIE+GL E++V D L L GS+V V+E
Sbjct: 108 ARDVAQLNNARTEVKRYEELVKKGYISASQFDQIKTNADSLEAAVKADEAIVENARLQLKYCYINSPISGKAGSLIVHEGNLIKANAD-TPMVIINQIQPIYVTFSVPEQFLPEIKKYMSTGKVKTQVFINKDTEHPVEGILTFIENAVDPDTGTIKLKSIFNNNDNRLWPGQFVDVLIILTIQKDALVIPSKAVMTGQGGQFVYVIKEDLSVENRPVAVSRTIADEAVIEKGLQSGERIVTDGQLRLMPGSKVQVKE 364
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Match: A0A7V8IPW9_9BACT (Putative multidrug efflux transporter MdtA n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V8IPW9_9BACT) HSP 1 Score: 195 bits (495), Expect = 4.980e-56 Identity = 111/260 (42.69%), Postives = 160/260 (61.54%), Query Frame = 1
Query: 1 ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAVLQQAQLQLSYAHIKAPIAGRTGSLAVDTGNLVTGGTGGSPLVVINSTQPITVALSVPQRFLDDVRRYWNTPDLKVQISLNPGGP-PVAEGSLVFIDNTVNPTTGTVLLKARFKNEKEELWPGQFVAARIILKVEKDALVLPEGAVQPGQDRPFVYVVREGKAAM-QAVKVSRQIGNRVVIEQGLSGDEQVVVDVPLALTVGSQVVVREP 774
ARD AQ A+E E R L+QK Y++R ++ + T +LEAV AA+ A L+ A+ QLSY I +PIAGR G + +D GNL+ L IN +PI V +VP++ L D+R+Y L V + L+ P P+ +G+L F+DNTV+ +TGT+ LKA FKN LWPGQFV A + L V+ DA+V+P AVQ GQ +V+V+ E A +AV VSR GN +I QG+ ++VV+D + + G +V +++P
Sbjct: 110 ARDIAQFENAREDERRYAELLQKGYVSRQQYEQSRTSAAALEAVAAASRANLEAAKTQLSYYFIHSPIAGRAGDVLIDEGNLIKANDDNKSLTTINQVEPIHVGFAVPEQHLADIRKYSAQKPLSVNVYLSKTDPEPIEQGTLTFVDNTVDASTGTIKLKATFKNSGHRLWPGQFVTAVLKLSVQDDAVVVPSEAVQTGQAGQYVFVIGEDMTAENRAVVVSRTYGNESIITQGIRPGDRVVIDGQMRVLPGGKVQIKDP 369 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14497.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14497.1.1 >prot_P-wetherbeei_contig14497.1.1 ID=prot_P-wetherbeei_contig14497.1.1|Name=mRNA_P-wetherbeei_contig14497.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=306bp ARDQAQLAQAKEQEARLRPLMQKEYITRNDFDVAATQVKSLEAVVAANSAback to top mRNA from alignment at P-wetherbeei_contig14497:791..1708- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14497.1.1 ID=mRNA_P-wetherbeei_contig14497.1.1|Name=mRNA_P-wetherbeei_contig14497.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig14497:791..1708- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14497:791..1708- >mRNA_P-wetherbeei_contig14497.1.1 ID=mRNA_P-wetherbeei_contig14497.1.1|Name=mRNA_P-wetherbeei_contig14497.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig14497:791..1708- (Phaeothamnion wetherbeei SAG_119_79)back to top |