mRNA_P-wetherbeei_contig1447.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1447.1.1
Unique NamemRNA_P-wetherbeei_contig1447.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1447.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1447contigP-wetherbeei_contig1447:512..6930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categorysignal peptide
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.896886-CDS-P-wetherbeei_contig1447:511..6581683186022.896886-CDS-P-wetherbeei_contig1447:511..658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1447 512..658 -
1683186022.9086564-CDS-P-wetherbeei_contig1447:6807..69121683186022.9086564-CDS-P-wetherbeei_contig1447:6807..6912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1447 6808..6912 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.9218037-UTR-P-wetherbeei_contig1447:6912..69301683186022.9218037-UTR-P-wetherbeei_contig1447:6912..6930Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1447 6913..6930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1447.1.1prot_P-wetherbeei_contig1447.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1447 512..6912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1447.1.1

>prot_P-wetherbeei_contig1447.1.1 ID=prot_P-wetherbeei_contig1447.1.1|Name=mRNA_P-wetherbeei_contig1447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MRAAAAPATVGAAATAAGVAVAVAGPAVIPAPGRRAAAGKDNKPEAVVGG
GGAGEDVDGADDADGSGSRGRRGDGGPSAVSGGA
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mRNA from alignment at P-wetherbeei_contig1447:512..6930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1447.1.1 ID=mRNA_P-wetherbeei_contig1447.1.1|Name=mRNA_P-wetherbeei_contig1447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=6419bp|location=Sequence derived from alignment at P-wetherbeei_contig1447:512..6930- (Phaeothamnion wetherbeei SAG_119_79)
ACATCAAGTGCGGCGGCGATGAGAGCAGCGGCGGCGCCGGCGACGGTGGG
AGCAGCGGCGACGGCGGCGGGTGTGGCGGTGGCGGTGGCGGGGCCGGCGG
TGATCCCAGCGCCTGGCCGGCGGGTGATGATGGCAACTACTGCGGCATCG
GTGTCGCCGGCGGCTGAAGGGGCGGCATCGGTCGAGCTCGCCGTCAAGAC
GATGCAGCGGAGCGCCTGGGCGGTGCTGAGCTTCTTGAGCGCCTCCGCGG
TGCAGGCGGGCAGCACAGGGTCGGCCGACGCCCCGGCGACGATGGCAACG
GCTCCGAGAACGCCAGATTCTGTCGCTGGCCGGAAGAGCAACGGCGGCTA
CGGCAGCTGCGGCAGCGGCGGGGGTGCTGGCAGCGACAGGCGGGGCAGCA
GTGACGAGCCGGCAGACGCAGTGTCGCTCTTGCTCGACACCCTCCAGCTT
AATGTGCGCTGCCTCGAGAGACAGGCGTTGCTGCCGGCCACAGCGGCGGC
GGCGGCGACGGTGGCGGGGACGCTGGTGGCGGCGGCGCCGGTGCCAGCAT
CGGAGATGGCTTTAGACGTGCTCGAGCGCGGCGACGTGGAGCCGCACACG
GCGTCGCTGTTGGCGTTGCTCTGCGCGCACCGGCGGAGCCACGCTGTGCG
CCGCGGCTGCGTGGCGTCGCTGGGCGTGCTTTTCCGGGCGCTGCGGGTCG
GGTCGCCGCGCTGCAAGCGAGCCGTCCTGCTCCTCCTACAGGCATCCCTT
CCCGACGCCGCGTCCGGGACAGCTACGGCGGCGGCGGCGGCGGCGGCGAC
AGCGGCGACGGCAGCTTCCCGCGGTGCGCTCGTACCCGCGGTTATGCCGC
TCCAAACGGGAGCGGCGTGCACCGTTCCCGTCTGTGGCGGCGGCGACGGC
CCGTGTCCGGCGACGGTGGTGGCGCTGCTGCTGGCGGAGGTGCAGCGCGC
CTACACGGTAGGGGCGGCACCGGCGGCGGCGGCGGCGGGTTCGGCGGGGA
CATTCGGCTGGGACGCCGGCTTCCGCAGTGGCCACTGCACGCTGCTCCTC
GCGGACCAGTCGTGCGCTGTCTTGCGACGGCTCCTGAACAGTTCCGCTGC
GTGGCAGGAGGCGACGGTACAGGCGTTGACCGCCGCGCTGGATGTGGGTA
TCTCCGCCTTGAAAGTTTCGGGCGCGCAAACTGACGGCGGTCACGACGGC
GGCGTCCCCGCCTCGAACAACGAAAGGAACGGGAGTGGCGGCAGCGACGG
CGGTGCTGCTGGGACGGCAACGGCAGTGGCGCTGATCCATGCGCTGGCCG
GGGCGGGCGCGGCGGCAGCGGTCGTCGGCGGCGACGGCTTTGGCTGCCTC
GGACCCGGCGTGGCGGTCCGGACCCGGTCCGGTGCCCTCGGCATAGTCGT
CGCCTATAGCCCAGGCGACAACGCTGCGGCCGTCGCCTTCGCGGACAGGA
CAAAGACGGAGACGGCATGGGGCACCACACAGGACTTCTCCCTCCCTGAG
CTCACCCCCGTCAGTGTGACCGGCGGCGACGCCGGTACCGGCAGCGCCGG
CTGGGTTTTCCAGGGACAGGGCGCCGCCGCCGTGGCCGAGCGGTTAGTTG
CGCTGGCGGCGGTGCTCTTCGCCGCAGCGGATGCGTCACCGGCTGCAATT
AACCTTCAGCCGGCGATGGCGGTGGGAATGGTAGTGGCGGCGGCGCCGGC
GCGCCAGCCCGCGATGTCGCTGCGAACGGACGTCGCCCGCTGGCGTCTCT
TGTGGCTGACACTCGAGGCGCTGATGCGGCTCTGTCCCGGCTCTGGCGCC
GCCGGAGGAGGGGGGGGCGATGGTGCCAGCGCCAAGGGTGCTTCCACCGC
TGCCACAGCGCTGACCGGGGCAGCCGCCGCGAAGCTGCTATCGTCGCTGG
CGGCGCTCGCCCAGCGGCCCGTCAAGATCCGCGCCCTGTGCACGGCGACG
GCGCTGCGGCGGCGGGCGCGGACGGTCCAGGACCGGCTCCTGTCATCTGC
CGAGGCGGTGGCATTGGCGCTGCCGGAGGATATCCGCAGCGGCGGCGGCA
TCGGCGGCGGCGGCGGCAGCGTGGAGCGAGACGCGATGGGAGACGTCGTT
GAGACCAACGGCGCCGCTCGCAGCGCCACTGCTATTGCTGCGACAGATGC
CGTCAGGAGCTTAGTGGCAGCAGCCGGCGCTGGTGCTGACGTGGCGGACG
GCCTCGACAACGCGGCCACTCGAAGTGGTTGCAGTGGCGCCGTCGCTGCC
GTGAAGGAGCCGCTGCTTCGTCACGTCGTCGTCTTCGATGAGCGAGCGGG
TCGAGCGCGGCGAGAGCTCGCCCGGTCCCTTGCGGCGGAGACGGGAATGT
TAGAGAAGGCAGCCCGCGCCGCGCTCGAAGCGTTTGGCGACGAAGACGGG
GCGCGCGTCTGGCTGCAGAGCTGCCTCGACCGCGGCTTCTGGCTCGACAG
GCTGCACAGGTGCAATTCATCTTTGGCGTCCCAGTGGGATCCGAGGTGCG
CCGTGCCGCCGCGCCTGCTGGGGCCCGCGGACAAAAGGGAGCCGGCGGGC
GAGTCGAAGCACAAGGGGCCGGCGGCACCGTCGGCGGCACCGGCGGCAGA
ATCGGCGGCCCCGGCTTCAGTGTCGGCGGCATCAGCGGCGGAAAGCCCTG
CTGCGCCGGCAGCGATAGGCGCCGCTGCACCGATGGCGTCTGCGCCGCCG
CCGCGTGCTATGGCGGCGGCGGAAGCGGCGGCAGCGGACGTTGCAGGAAG
GACAGCAGCATCGGCGGAGCGGGCAGGGGAGGAAGCGGTGGCAGCAGTGC
CGCCGCCAAACATCCAAGACGCGTTTCTCGCCCCGGAGCCGCCTCGTGTA
ACTGCCGCGACAGCGGCGGCGAACGCAAACCGCCTGGGCTGGATGATCGG
GAACGGCTCCACAGTGTACGGCGGCGTACGGCGCTGGCGGCTGCCGCGGG
ACGGCTTCCGCGACTGCGCACGAGGCAACGATGGCGCTACTACGGCGGCC
GCCGATCAGGCGGTCGTGGTCAGTCTGCTGGCGGGCAGCGGCGGTGGCGG
CATGCGGAGCAGAGGGACGGCGCCCTCCGCCGAGGCAGAAGCGGCCGAGC
TGGCGGCCGCCGACGCCACCGCCGCCGGCCGTCACCAGTTGGCGGCGTGG
GAGCACAGCGTCGGGCTCGGGCGGCCGCAGGTTGGTGTCCCCGTGCCGCC
GCCGCCGCGGGCGGCGACGGCGATGGCGGCGGCTGCCGCCGCCGCCGCAG
AGCCGGCGCTTGCTCTATGCGAGGTTGATTTGGAGCCGCTGCTGCTGCTG
CCGTCGGCGGTGCCGCCGCCGGTGGCGTCGCCGCCGGGAGCTAGGAGCTC
TGTACATGCAGCGAGCAGTACGGTGAAAGGAGCGGTTGCCCCGCCGAATG
ACGACGCGTCGGCGGCGTGGGCGGCAGCACCTACGTCTGCGGCGCCTCAG
GCGCGGTCGTCGGCGGTGGAACTGGTGTGCGTGAGTACAGCCGAGGGTGC
TCAGGAAACGGCACCGGGGCCGTGCGGCACCTTCGTTGCTACACTCACCA
ATTCGGCGGCGCTGGTGGACGTGCTCGACTGCGAGACGGGCACGCGCCTC
TGCCGCGTCGTAGCGCCGTCGGCGCTGCGACGGTCGCGAAGCCTGTACGG
CTGGCCCCTCGCTGGCGGCGGCGGTGGTGGCGATGATGGCGATGATGGCG
ACAGCAGTGCTGGCAGCGGCGGTGATGCCAACCATAGCGCTGTTATTGGC
GGAGGGGACGGCGGCAGCGAGGACGGCGGTGGTAATGGCGGTGTCGCTGC
TGAGTCGTCGTCATTGCTGCTACTGCGGGTGATGTCGGAGACGGAAGAAG
CACTGGCGATGGTGACGGCGCGCCGGGCGGTCGTCCGGCTGGCGCCGCCC
GCCGGGCTCGCAGTGGCGGAGGCCGTCGGGACCTTGCCGGGGGTGATCAA
CTTTCTCCGGCTCGCTGCGGCGGAGGAGCAGTCGCGCGCATGCGGTTCGC
CCACGGATGCCGGAGCAGCTGTGGCTGCGGCAGCTGCTGCTATGTCTGCC
GCAAGTGCTGGTAGCCATGGCGACGACGGCAGCTTCGCAGCGCCGTCATC
GGAGGGATCGCACGCGCTTTTGCACGGCAGCGGCGGCGATTCTCACTTGC
ACGTGCTGTGGAACCGCATCCTCCGGGGCGCGGTTCCCTCGTTTCTGACA
GGCCACGGTGAATCGGAGCCTACACCGCAGCTGCCGCCGTCGCCGCTGTC
TCGGCCATCGGTAGCCGAGGTCATGGAGACGCACATCGCAGAGTCGCTGC
AGGGGGCGGTCTACTCGCTGCTTGCCGACACAGAGGCCACCGCGGCGAGG
CGCCACCTCTTCAACCCGACGGACGTCCCCGCCGACCGCCACGAGCATGA
GTCGCTGCACCCACTGGCGTCGCCGCTCTGCTACGGCGGCCGCTTCGTCA
TGTGCGGTGACAAGGGTTACGACGACGGTTACAGTGACAATGGTTACGAC
GGTGGCGATGGCGACGGCCGCCGGCGGCCCGACGTGCGTGACCGCTGCCG
CGGCGGCGGAGGCGCCGGCGGCGCGGGCTGGTACGGCGGCCGGGAGAGCG
GCGGCGTCTGGCTCGGCCGCGGGCTGCTGTTCGGCATCGCCGTGAAGGTT
GATGCCCGAAGCGCGCTGCCGCCGGCGGGCCGGCTACGCTTCTTCGCGTG
CGAGGCGGACATGCGCGCCGGGCGGGCGCCGCTGCGCGAGATGTGCGGCG
CCGACGCGGAACGGGCGGCGCGGGCGCGCGCCAAGGGCGCCGAGTACTTC
AAGATGGAAGTGAGAAATATTTATCCTTCCCAAACATGAATTGTTTGAGC
CTCATTTATTCGAAATGTCGGCCTGTTCATGTCACTTTGTTCAAGCTTCG
AGTTCTTTCAAACGTCAATTCGTTTGAATGTCGCATGACTTTTGTTCGAA
CATCAATCGTATTCTGTTGGGGTTCGTCTGTTGCGGCACGTAGCCTTTCC
ACTTTGGCACAGTCCGCTCTCTTTTTGGCTGTGTCATTCATTATTTCCCT
GCGCGACCCCGTTGGAACAGGCGGTGGACGACCATTTTGTGTCGCCGGAC
ACCGCTCCGGTCCAGCTGGCCGCAGCGGCAGAGGCGGCGGCTGGCGGCGG
CGCCGGCTGCAGCTGGCCCGTGGCGGGCCTGGCAGAGCGGCGAGGCTTCC
GCTCCTTTGCGTTGCCAGGCTTCACCGAGCTGTGGTTCCGCTTCGACTTG
CCGGCGGGCGCAGACAAGCCGCCGCTGCAGATGACGGTTGGTTTTCAGCA
ATTCTCAGTACTTTGGTCGGTCTTGGTCGGTCGTTGTCGATCTTTTGCTC
GGCACGGTTTGGGACGGAGGCCTAAGGCATGCAATGTAACATCTTTCTAT
GGCGGCGCGCCTCTCATCTGTGGCGCCGTCTCGTTGAGCAGCGCTAGACT
TATTGCGCGAACTGAAGAGGCATGCCGGGAATCAGTTCCGCTCATCTGAC
GCTACTCCTTTTCCTACTGTCATTCTGCTGCCTGCCAAAACTCTCTCCAT
ATATTATCTTTACTTGCGTGCCAGTGCATCTCTGGCCATTTGCACCGGCT
GCGGAGCGGCGCTCTTAGAGCAGTGGCCGCCATCGCCAGCACCAGCGCTA
ACGGCGGCGACGATGGCGACGGCAGCTGCGGTGGCAGTGGTCTGCTGTCG
CGCTTCGTGGCAGCGGCGGCGGCGGTGGAGTCGCTCACGCCGCGGACGGA
AGACGCGGCAGCTGTAGCGCCGGCGGCCGGAGGCGCTGCGGCCGCCGGGA
TCGTTCCATTGGATGGCACCAGCAGCTCCTCGGGCTCAGGCAAGCCTCCG
TCGCTTCTGTTCCCAGCTTCGCTTGTTCTTGCGGGATTGGTCGGAATGTT
TATCGCTTATCGTCTGAAATAATCGGGAAACATGGAAGCATGTCAGTGCT
TTAAGGTGCCGGTTCCAGAATGGCCATGAGTTGTGCCTGGATCTTTCTTT
GTTTTGATACACCACAAAATGCAAGATGATAGTACTTATAGTGCTTTCGT
AACTTCCTGAAGGCGCTCACTCGGCTTTCTCCGTTCCGCGTCTCCCCCTC
GGCAGAGCCAAAGGCGGAGCGGCTAACGTGCGTAATCGCCCCAAGGGTCC
GTCTCACGTCCGGCATGTGGTACTGGGAGGCGACGCTCGCGGCGCCCGCC
GCTGCCGGCGATGTGCAACTATGCTTGATCGCCGCCGACGGCGAGCGCGG
CGGGAACGACGGAAAAGAAAAGGCCGCCGCCGGAAAAGACAACAAGCCAG
AGGCGGTCGTTGGAGGCGGCGGCGCTGGTGAAGACGTTGACGGTGCCGAC
GATGCTGATGGCAGCGGCAGCCGCGGTCGCCGCGGTGATGGCGGTCCGAG
TGCCGTCAGCGGCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1447:512..6930-

>mRNA_P-wetherbeei_contig1447.1.1 ID=mRNA_P-wetherbeei_contig1447.1.1|Name=mRNA_P-wetherbeei_contig1447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig1447:512..6930- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGCAGCGGCGGCGCCGGCGACGGTGGGAGCAGCGGCGACGGCGGC
GGGTGTGGCGGTGGCGGTGGCGGGGCCGGCGGTGATCCCAGCGCCTGGCC
GGCGGGCCGCCGCCGGAAAAGACAACAAGCCAGAGGCGGTCGTTGGAGGC
GGCGGCGCTGGTGAAGACGTTGACGGTGCCGACGATGCTGATGGCAGCGG
CAGCCGCGGTCGCCGCGGTGATGGCGGTCCGAGTGCCGTCAGCGGCGGCG
CC
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