mRNA_P-wetherbeei_contig1037.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1037.2.1
Unique NamemRNA_P-wetherbeei_contig1037.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Match: A0A6H5JRE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.370e-11
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  355 FVAYLARFLLNFDEDCRLFYSSSITAAVPERRQEAEWETFAALAASVDIGLRRYQEPGGAEVLARQLYDRYAVSEAPSNSADADTGAAXXXXXXXXXXATEAARQLGLLFSFLPPSRQPLGFLDSILKTESMG 753
            FVAYLARFLLN+DE CR ++   +   +P R     WE F    A+V +GL  +Q   GA  L   L  +Y    AP                          +QL +LFS LPP  QP+  + S+L   + G
Sbjct:  302 FVAYLARFLLNYDEGCREYFKGKLDCTLPRRDGSHVWEEFRGFVAAVGLGLHEFQGSKGARELLESLSRKYVSDGAP--------------------------QQLAMLFSLLPPDIQPVPDIKSLLSFPTEG 408
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BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Match: D7G037_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G037_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 9.610e-11
Identity = 47/137 (34.31%), Postives = 64/137 (46.72%), Query Frame = 1 
Query:  355 FVAYLARFLLNFDEDCRLFYSSSITAAVPERRQEAEWETFAALAASVDIGLRRYQEPGGAEVLARQLYDRYAVSEAPSNSADADTGAAXXXXXXXXXXATEAARQLGLLFSFLPPSRQPLGFLDSILKTESMGKAAG 765
            FVAYLARFLLN+DE CR ++   +   +P+R     WE F    A+V +GL  +Q   GA  L   L  +Y    AP                          +QL +LFS LPP  QP+  + S+L   + G A+G
Sbjct:  123 FVAYLARFLLNYDEGCRDYFKGKLDCTLPKRDGSHVWEEFRGFVAAVGLGLHEFQGSKGARELLESLSRKYDSDGAP--------------------------QQLAMLFSLLPPDVQPVPDIKSLLSFPT-GSASG 232
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BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Match: A0A0G4H5A8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5A8_9ALVE)

HSP 1 Score: 71.2 bits (173), Expect = 3.620e-10
Identity = 54/169 (31.95%), Postives = 76/169 (44.97%), Query Frame = 1 
Query:  283 DPMIWRGMAGAAVVGSEQL-------------FFPPQFVAYLARFLLNFDEDCRLFY----SSSITAAVPERRQEAEWETFAALAASVDIGLRRYQEPGGAEVLARQLYDRYAVSEAPSNSADADTGAAXXXXXXXXXXATEAARQLGLLFSFLPPSRQPLGFLDSILK 738
            D  IWRG      +G   +              +P  FV +LAR LLNFD+  + ++    SS  ++  P  RQ    E F   AASV++GLRRYQ  GG  +L   L +R+A ++ P++                        RQL LLFS LP   QP+  +D + K
Sbjct:  214 DDGIWRGADAQGWIGRGDIGKLSVSINNEVERTYPLAFVTFLARVLLNFDKASKRWWTEQKSSLPSSFSPADRQRYLREVFGEFAASVELGLRRYQGEGGVALLCELLIERFANAQPPNSR-----------------------RQLALLFSLLPKGLQPVQEMDILSK 359
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BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Match: A0A448ZQD7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQD7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-6
Identity = 54/168 (32.14%), Postives = 77/168 (45.83%), Query Frame = 1 
Query:  283 DPMIWRGMAGAAVVGSEQLFFPPQFVAYLARFLLNFDEDCRLFYSSSITAAVPERRQEAE-----------WETFAALAASVDIGLRRYQEPG--GAEVLARQLYDRYAVSEA----PSNSADADTGAAXXXXXXXXXXATEAARQLGLLFSFLPPSRQPLGFLDSIL 735
            DP+  R  +G  V  +E+  +   FV YLARFLLNFD +C+L++ SS      + +Q  +           +E F+  AASV++GL +    G  G  +L  +L  RY   EA     +N  D +              A  A R + LLF FL   RQP   L  +L
Sbjct:  126 DPINKR--SGVTVEDAERAGYSVAFVTYLARFLLNFDTNCQLWWFSSRRIPRGKNKQSLDGVDSSSYEQLRYEQFSKFAASVEVGLAQSYANGKEGPTILLEELVQRYGTIEAYRENDNNEKDWERS------------AKAARRHIALLFGFLE-KRQPTEALGELL 278
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BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Match: A0A7S4FCX2_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCX2_CHRCT)

HSP 1 Score: 55.1 bits (131), Expect = 1.380e-5
Identity = 44/146 (30.14%), Postives = 64/146 (43.84%), Query Frame = 1 
Query:  289 MIWRGMAGAAVVGSEQLFFPPQFVAYLARFLLNFDEDCRLFYS---SSITAAVPERRQ-EAEWETFAALAASVDIGLRRYQEP-GGAEVLARQLYDRYAVSEAPSNSADADTGAAXXXXXXXXXXATEAARQLGLLFSFLPPSRQP 711
            ++W   +   V  S  + +PP+FV YLARFLLN+D   R ++S   SS+   V      E   + F   + SV +GL+++ +P  G   L   L  RY VS                          +   QL +LFS +P  RQP
Sbjct:   17 LVWEPRSELPVRASGGVEYPPRFVTYLARFLLNYDAGSRQWWSDQSSSLPLGVSRAALVELRIKQFEQFSQSVQVGLQQFSKPMDGPRQLYSLLRSRYGVSR-------------------------QNKLQLAILFSLIPAPRQP 137
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BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Match: A0A7S1RM25_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RM25_ALECA)

HSP 1 Score: 54.3 bits (129), Expect = 6.700e-5
Identity = 48/139 (34.53%), Postives = 61/139 (43.88%), Query Frame = 1 
Query:  355 FVAYLARFLLNFDEDCRLFYSSSITAAVP-----ERRQEAEWETFAALAASVDIGLRRYQEPGGAEV-LARQLYDRYAVSEAPSNSADADTGAAXXXXXXXXXXATEAARQLGLLFSFLPPSRQPLGFLDSILKTESMG 753
            F+ YLAR LLN+DE    ++ + +   V      E R     E FA  AASV+ GLRRY E G  E  L ++L  RY  +E                         E  RQL L F+ L    QPL  + SIL T + G
Sbjct:  101 FIIYLARILLNYDEASASWWENEVLPRVSQDASMEARGAVLRERFAEYAASVEFGLRRYTEQGRRESGLLKKLVQRYGSTE-------------------------ERRRQLALAFTLLED--QPLDLIASILDTLTPG 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1037.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRE0_9PHAE4.370e-1133.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G037_ECTSI9.610e-1134.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4H5A8_9ALVE3.620e-1031.95Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A448ZQD7_9STRA1.020e-632.14Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4FCX2_CHRCT1.380e-530.14Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S1RM25_ALECA6.700e-534.53Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1037contigP-wetherbeei_contig1037:3884..5025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G037
PFAMsMito_carr
Model size863
Max annot lvl2759|Eukaryota
KEGG koko:K15102
KEGG TC2.A.29.4
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.5e-11
EggNOG OGsKOG0767@1|root,KOG0767@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-12_007080.1
Descriptionphosphate ion transmembrane transport
Cds size852
COG categoryU
BRITEko00000,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.8841429-CDS-P-wetherbeei_contig1037:3883..42671683185865.8841429-CDS-P-wetherbeei_contig1037:3883..4267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1037 3884..4267 -
1683185865.8997214-CDS-P-wetherbeei_contig1037:4548..50161683185865.8997214-CDS-P-wetherbeei_contig1037:4548..5016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1037 4549..5016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.908221-UTR-P-wetherbeei_contig1037:5016..50251683185865.908221-UTR-P-wetherbeei_contig1037:5016..5025Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1037 5017..5025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1037.2.1prot_P-wetherbeei_contig1037.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1037 3884..5016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1037.2.1

>prot_P-wetherbeei_contig1037.2.1 ID=prot_P-wetherbeei_contig1037.2.1|Name=mRNA_P-wetherbeei_contig1037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MRRQQRRRWPLRLAIVLLLRPCRLASAFDLRASVAKNDLRESPRDIRITC
RMCVDSISATGRRAFLDKAGGRAVLAASAAGIILSSTPTWADPMIWRGMA
GAAVVGSEQLFFPPQFVAYLARFLLNFDEDCRLFYSSSITAAVPERRQEA
EWETFAALAASVDIGLRRYQEPGGAEVLARQLYDRYAVSEAPSNSADADT
GAATTAATTGAPAATEAARQLGLLFSFLPPSRQPLGFLDSILKTESMGKA
AGAGRPRKGGGRSRPPRGGILAAITAPVAIVSEL
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mRNA from alignment at P-wetherbeei_contig1037:3884..5025-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1037.2.1 ID=mRNA_P-wetherbeei_contig1037.2.1|Name=mRNA_P-wetherbeei_contig1037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1142bp|location=Sequence derived from alignment at P-wetherbeei_contig1037:3884..5025- (Phaeothamnion wetherbeei SAG_119_79)
CCATAAAACATGCGCCGCCAGCAGCGGCGTCGGTGGCCGCTACGGCTCGC
CATCGTCCTGCTTCTTCGGCCCTGCCGTCTCGCTTCGGCGTTCGACCTGC
GAGCTTCGGTCGCGAAGAACGACTTGAGAGAGAGCCCACGCGATATTAGA
ATAACTTGCAGGATGTGCGTTGACAGCATCTCTGCAACAGGTCGGCGAGC
CTTCCTCGACAAGGCCGGCGGCCGCGCTGTTTTGGCTGCGTCCGCGGCGG
GAATCATACTTTCTTCTACGCCCACTTGGGCAGATCCTATGATATGGCGA
GGTATGGCGGGAGCAGCTGTTGTAGGCTCGGAGCAGCTGTTCTTCCCGCC
TCAATTCGTGGCATACCTCGCGCGATTCCTGCTCAATTTTGACGAAGATT
GTCGCCTGTTCTACTCGTCGAGCATTACGGCAGCGGTTCCGGAGAGGAGA
CAAGAGGCGGAGTGGGAGACGTTTGCGGTGAGAGACATGTACAAGGAGGG
AACTCCGACTGAAGATGATATCTGTGGCTGTGTCGGGAGGGGGTTTCCGT
TTCTGTCTATTTTTGTTTTCGAATATCTTTGAGACTTCTTTTCGCCATGC
ATCCGCTGCCCTTGAAACGCTTCTGATCCCCCTTACACCTCGCCGAACCG
CAGAAGCGCTGAACCGAGCACGCCCGCCGTGGAATGCGTTGCCTTTTGTA
ATACAAATTCCTCCTTCTGAGCGCCCTCCTTTGCCATGCTTTTGTTCGCC
GTTTTCAGGCACTGGCGGCGTCTGTGGACATCGGGCTTCGGCGGTACCAA
GAACCCGGCGGGGCGGAAGTGCTGGCGCGACAGCTTTACGACCGTTACGC
AGTGTCGGAGGCGCCTTCAAATTCGGCTGATGCTGATACGGGAGCGGCGA
CGACGGCGGCAACAACAGGGGCGCCGGCGGCAACAGAAGCGGCACGGCAG
CTGGGGCTCCTCTTCAGCTTCCTCCCGCCGTCTCGCCAACCCCTCGGGTT
TCTCGACTCCATTCTGAAAACAGAAAGCATGGGCAAGGCCGCCGGCGCCG
GAAGACCCCGAAAGGGCGGCGGCCGGAGCCGCCCTCCTCGCGGAGGCATC
TTGGCTGCGATCACCGCCCCCGTCGCTATCGTGAGCGAACTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1037:3884..5025-

>mRNA_P-wetherbeei_contig1037.2.1 ID=mRNA_P-wetherbeei_contig1037.2.1|Name=mRNA_P-wetherbeei_contig1037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig1037:3884..5025- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCGCCAGCAGCGGCGTCGGTGGCCGCTACGGCTCGCCATCGTCCT
GCTTCTTCGGCCCTGCCGTCTCGCTTCGGCGTTCGACCTGCGAGCTTCGG
TCGCGAAGAACGACTTGAGAGAGAGCCCACGCGATATTAGAATAACTTGC
AGGATGTGCGTTGACAGCATCTCTGCAACAGGTCGGCGAGCCTTCCTCGA
CAAGGCCGGCGGCCGCGCTGTTTTGGCTGCGTCCGCGGCGGGAATCATAC
TTTCTTCTACGCCCACTTGGGCAGATCCTATGATATGGCGAGGTATGGCG
GGAGCAGCTGTTGTAGGCTCGGAGCAGCTGTTCTTCCCGCCTCAATTCGT
GGCATACCTCGCGCGATTCCTGCTCAATTTTGACGAAGATTGTCGCCTGT
TCTACTCGTCGAGCATTACGGCAGCGGTTCCGGAGAGGAGACAAGAGGCG
GAGTGGGAGACGTTTGCGGCACTGGCGGCGTCTGTGGACATCGGGCTTCG
GCGGTACCAAGAACCCGGCGGGGCGGAAGTGCTGGCGCGACAGCTTTACG
ACCGTTACGCAGTGTCGGAGGCGCCTTCAAATTCGGCTGATGCTGATACG
GGAGCGGCGACGACGGCGGCAACAACAGGGGCGCCGGCGGCAACAGAAGC
GGCACGGCAGCTGGGGCTCCTCTTCAGCTTCCTCCCGCCGTCTCGCCAAC
CCCTCGGGTTTCTCGACTCCATTCTGAAAACAGAAAGCATGGGCAAGGCC
GCCGGCGCCGGAAGACCCCGAAAGGGCGGCGGCCGGAGCCGCCCTCCTCG
CGGAGGCATCTTGGCTGCGATCACCGCCCCCGTCGCTATCGTGAGCGAAC
TC
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