mRNA_P-wetherbeei_contig14443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14443.1.1
Unique NamemRNA_P-wetherbeei_contig14443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A6H5JS11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS11_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.550e-24
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            ++QVAERTASKC+EWLGGVGFT A+LAEK+YRD KIGAIYEG+SN+QL TIAK++R DY
Sbjct:  349 TSQVAERTASKCVEWLGGVGFTKAFLAEKFYRDCKIGAIYEGTSNIQLSTIAKILRKDY 407
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A2G9TSY6_TELCI (Acyl-CoA_dh_1 domain-containing protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TSY6_TELCI)

HSP 1 Score: 92.8 bits (229), Expect = 1.340e-23
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            S+QVA  TASKC+EWLGGVGFT  Y  EKYYRDAKIG IYEG+SN+QL TIAKL+ A+Y
Sbjct:    6 SSQVACNTASKCVEWLGGVGFTKEYPVEKYYRDAKIGTIYEGTSNIQLNTIAKLIDAEY 64
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A2D4BKT0_PYTIN (Acyl-CoA dehydrogenase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKT0_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 2.340e-22
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            +++VAERTASKCIEWLGG+GFT   LAEK+YRDAKIGAIYEG+SNMQL TIAK+++  Y
Sbjct:  253 ASRVAERTASKCIEWLGGIGFTKYLLAEKFYRDAKIGAIYEGTSNMQLSTIAKIVKEQY 311
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A7S1G4M3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4M3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.640e-22
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            ++QVAERTASKC+EWLGGVGFT  + AEK+YRD KIGAIYEG+SN+QLQTIAKL++ +Y
Sbjct:  372 ASQVAERTASKCVEWLGGVGFTKDFPAEKFYRDCKIGAIYEGTSNIQLQTIAKLVQKEY 430
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A0R3PHQ9_ANGCS (Acyl-CoA_dh_1 domain-containing protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A0R3PHQ9_ANGCS)

HSP 1 Score: 88.6 bits (218), Expect = 9.300e-22
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    7 QVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            +VA    SKC+EWLGGVGFT AY  EK+YRDAKIGAIYEG+SN+QL TIAKL+ A+Y
Sbjct:   20 KVATTATSKCVEWLGGVGFTKAYPVEKFYRDAKIGAIYEGTSNIQLNTIAKLIDAEY 76
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A7S1CX26_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX26_CYCTE)

HSP 1 Score: 95.5 bits (236), Expect = 1.130e-21
Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            +AQVAERTASK IEWLGG+GFT   LAEK+YRD K+G+IYEG+SN+QLQTIAKL++A+Y
Sbjct:  381 AAQVAERTASKTIEWLGGIGFTQDLLAEKFYRDCKVGSIYEGTSNIQLQTIAKLLQAEY 439
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A482RE16_9ARCH (Acyl-CoA_dh_1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RE16_9ARCH)

HSP 1 Score: 92.0 bits (227), Expect = 1.360e-21
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            ++QVAER ASK IEW+GGVGF   Y AEK+YRD KIGAIYEG+SN+QLQTIAK+M A+Y
Sbjct:  160 ASQVAERVASKAIEWMGGVGFVKDYPAEKFYRDCKIGAIYEGTSNIQLQTIAKIMAAEY 218
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A0K0DDC7_ANGCA (Acyl-CoA_dh_1 domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DDC7_ANGCA)

HSP 1 Score: 88.2 bits (217), Expect = 1.690e-21
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   10 VAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            VA    SKC+EWLGGVGFT AY  EK+YRDAKIGAIYEG+SN+QL TIAKL+ A+Y
Sbjct:   30 VATTATSKCVEWLGGVGFTKAYPVEKFYRDAKIGAIYEGTSNIQLNTIAKLIDAEY 85
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A7S2LMZ9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LMZ9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.710e-21
Identity = 43/59 (72.88%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADY 177
            ++Q+AERTASK IEWLGG+GFT   LAEK+YRD K+G+IYEG+SN+QLQTIAKL++ADY
Sbjct:  399 ASQIAERTASKSIEWLGGIGFTKDLLAEKFYRDCKVGSIYEGTSNIQLQTIAKLIQADY 457
[Close]
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Match: A0A0B1T343_OESDE (Acyl-CoA dehydrogenase protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1T343_OESDE)

HSP 1 Score: 91.3 bits (225), Expect = 3.590e-21
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQTIAKLMRADYL 180
            S+QVA  T SKC+EWLGGVGFT  Y  EK+YRDAKIG IYEG+SN+QL TIAKL+ A+Y+
Sbjct:  172 SSQVATTTTSKCVEWLGGVGFTKEYPVEKFYRDAKIGTIYEGTSNIQLNTIAKLIDAEYM 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS11_9PHAE3.550e-2477.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2G9TSY6_TELCI1.340e-2374.58Acyl-CoA_dh_1 domain-containing protein n=1 Tax=Te... [more]
A0A2D4BKT0_PYTIN2.340e-2274.58Acyl-CoA dehydrogenase, putative n=1 Tax=Pythium i... [more]
A0A7S1G4M3_9STRA5.640e-2274.58Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0R3PHQ9_ANGCS9.300e-2271.93Acyl-CoA_dh_1 domain-containing protein n=1 Tax=An... [more]
A0A7S1CX26_CYCTE1.130e-2174.58Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A482RE16_9ARCH1.360e-2172.88Acyl-CoA_dh_1 domain-containing protein n=1 Tax=ar... [more]
A0A0K0DDC7_ANGCA1.690e-2173.21Acyl-CoA_dh_1 domain-containing protein n=1 Tax=An... [more]
A0A7S2LMZ9_9STRA1.710e-2172.88Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0B1T343_OESDE3.590e-2170.00Acyl-CoA dehydrogenase protein n=1 Tax=Oesophagost... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14443contigP-wetherbeei_contig14443:1435..1620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWS9
Preferred nameACADSB
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Model size186
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00068,RC00076,RC00148
KEGG koko:K09478,ko:K18402
KEGG ReactionR01175,R02661,R03172,R04751
KEGG Pathwayko00071,ko00280,ko01100,ko01110,ko01212,map00071,map00280,map01100,map01110,map01212
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006520,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009150,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016937,GO:0019395,GO:0019637,GO:0019693,GO:0019752,GO:0022900,GO:0030258,GO:0031974,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034440,GO:0034641,GO:0035383,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046395,GO:0046483,GO:0050829,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0072521,GO:0098542,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue2.57e-25
EggNOG OGsCOG1960@1|root,KOG0139@2759|Eukaryota
Ec32 ortholog descriptionacyl-CoA dehydrogenase
Ec32 orthologEc-16_004260.1
EC1.3.99.12
Descriptionoxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
Cds size186
COG categoryI
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.0987945-CDS-P-wetherbeei_contig14443:1434..16201683186022.0987945-CDS-P-wetherbeei_contig14443:1434..1620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14443 1435..1620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14443.1.1prot_P-wetherbeei_contig14443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14443 1435..1620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14443.1.1

>prot_P-wetherbeei_contig14443.1.1 ID=prot_P-wetherbeei_contig14443.1.1|Name=mRNA_P-wetherbeei_contig14443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
SAQVAERTASKCIEWLGGVGFTTAYLAEKYYRDAKIGAIYEGSSNMQLQT
IAKLMRADYLR*
back to top

mRNA from alignment at P-wetherbeei_contig14443:1435..1620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14443.1.1 ID=mRNA_P-wetherbeei_contig14443.1.1|Name=mRNA_P-wetherbeei_contig14443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig14443:1435..1620- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCGCAGGTGGCGGAGCGCACGGCCTCGAAGTGCATCGAGTGGCTGGG
CGGCGTGGGCTTCACGACGGCGTATCTGGCCGAGAAATACTATCGGGACG
CCAAGATCGGCGCCATCTACGAGGGCAGCAGCAATATGCAGCTGCAAACC
ATCGCCAAGCTCATGCGCGCCGATTATCTCCGGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14443:1435..1620-

>mRNA_P-wetherbeei_contig14443.1.1 ID=mRNA_P-wetherbeei_contig14443.1.1|Name=mRNA_P-wetherbeei_contig14443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig14443:1435..1620- (Phaeothamnion wetherbeei SAG_119_79)
TCCGCGCAGGTGGCGGAGCGCACGGCCTCGAAGTGCATCGAGTGGCTGGG
CGGCGTGGGCTTCACGACGGCGTATCTGGCCGAGAAATACTATCGGGACG
CCAAGATCGGCGCCATCTACGAGGGCAGCAGCAATATGCAGCTGCAAACC
ATCGCCAAGCTCATGCGCGCCGATTATCTCCGGTAA
back to top