mRNA_P-wetherbeei_contig14438.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14438.2.1
Unique NamemRNA_P-wetherbeei_contig14438.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: UPI0019AE1995 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Microbacteriaceae bacterium TaxID=1873462 RepID=UPI0019AE1995)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   22 ELVEQYEFVGGG-PFCSFQVDMTSTLNTSYCAASVSFVNKRHEH----RRISLATRAFPGTHTAADVSPW 216
            EL +QY+ +G   PFCS Q+DMT+T N ++C  SVSFV +  +     ++++L TR+FP  HTAA V  W
Sbjct:  116 ELQQQYQSLGHSLPFCSLQLDMTTTNNVAFCTLSVSFVKEAADSSFTMQKVNLVTRSFPHEHTAAQVQSW 185          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.190e-9
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   40 EFVG---GGPFCSFQVDMTSTLNTSYCAASVSFVNK--RHEHRRISLATRAFPGTHTAADVSPWITA 225
            EF+G   GG F    +D+T+  N  Y   +VS+V K    +  R++LATRAFPG+HTA D+ PWI A
Sbjct:   82 EFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEA 148          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.290e-9
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   55 GPFCSFQVDMTSTLNTSYCAASVSFVNKRHEH-RRISLATRAFPGTHTAADVSPWI 219
            GPF   Q+D+T+  N  Y   SVS++ +      R+ LATRAFPG+HTAAD+ PWI
Sbjct:  265 GPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWI 320          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.590e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   52 GGPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWITA 225
            GG F   Q+D+T+     Y   +VS+V K   +  R+SLATRAFPG+HTA D+ PWI A
Sbjct:   93 GGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEA 151          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.590e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   52 GGPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWITA 225
            GG F   Q+D+T+     Y   +VS+V K   +  R+SLATRAFPG+HTA D+ PWI A
Sbjct:   93 GGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEA 151          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.560e-8
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   55 GPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWI 219
            GPF   Q+D+T+     Y   +V+FV K   +  RI+LA RAFPG+HTA D+ PWI
Sbjct:   90 GPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWI 145          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.620e-8
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   55 GPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWI 219
            GPF   Q+D+T+     Y   +V+FV K   +  RI+LA RAFPG+HTA D+ PWI
Sbjct:  285 GPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWI 340          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.690e-8
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   55 GPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWI 219
            GPF   Q+D+T+     Y   +V+FV K   +  RI+LA RAFPG+HTA D+ PWI
Sbjct: 1369 GPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWI 1424          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.960e-7
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   55 GPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWI 219
            G F   Q+D+T+     Y   +VS+V K   +  R++LA RAFPGTHTA D+SPWI
Sbjct:  283 GAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWI 338          
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 9.420e-7
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   55 GPFCSFQVDMTSTLNTSYCAASVSFVNKRH-EHRRISLATRAFPGTHTAADVSPWI 219
            G F   Q+D+T+     Y   +VS+V K   +  R++LA RAFPGTHTA D+ PWI
Sbjct:  399 GAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWI 454          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14438.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI0019AE19952.990e-1145.71NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Microb... [more]
A0A6H5JXV5_9PHAE6.190e-946.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE6.290e-950.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZU3_9PHAE1.590e-849.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.590e-849.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE5.560e-848.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE5.620e-848.21Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE5.690e-848.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.960e-748.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE9.420e-746.43Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14438contigP-wetherbeei_contig14438:818..1042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.8689106-CDS-P-wetherbeei_contig14438:817..10421683186021.8689106-CDS-P-wetherbeei_contig14438:817..1042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14438 818..1042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14438.2.1prot_P-wetherbeei_contig14438.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14438 818..1042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14438.2.1

>prot_P-wetherbeei_contig14438.2.1 ID=prot_P-wetherbeei_contig14438.2.1|Name=mRNA_P-wetherbeei_contig14438.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
LRATLQAELVEQYEFVGGGPFCSFQVDMTSTLNTSYCAASVSFVNKRHEH
RRISLATRAFPGTHTAADVSPWITA
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mRNA from alignment at P-wetherbeei_contig14438:818..1042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14438.2.1 ID=mRNA_P-wetherbeei_contig14438.2.1|Name=mRNA_P-wetherbeei_contig14438.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig14438:818..1042+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGGCGACGTTGCAGGCGGAGCTGGTGGAGCAGTACGAGTTCGTGGG CGGTGGACCGTTCTGCAGCTTCCAGGTGGACATGACCTCCACACTCAATA CGAGCTACTGCGCTGCGTCTGTCAGCTTCGTCAACAAGCGCCATGAGCAC CGCCGGATCAGTTTGGCCACGAGGGCATTCCCGGGAACGCACACAGCAGC CGACGTCTCGCCGTGGATAACCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14438:818..1042+

>mRNA_P-wetherbeei_contig14438.2.1 ID=mRNA_P-wetherbeei_contig14438.2.1|Name=mRNA_P-wetherbeei_contig14438.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig14438:818..1042+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGGCGACGTTGCAGGCGGAGCTGGTGGAGCAGTACGAGTTCGTGGG
CGGTGGACCGTTCTGCAGCTTCCAGGTGGACATGACCTCCACACTCAATA
CGAGCTACTGCGCTGCGTCTGTCAGCTTCGTCAACAAGCGCCATGAGCAC
CGCCGGATCAGTTTGGCCACGAGGGCATTCCCGGGAACGCACACAGCAGC
CGACGTCTCGCCGTGGATAACCGCG
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