mRNA_P-wetherbeei_contig14438.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14438.3.1
Unique NamemRNA_P-wetherbeei_contig14438.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.180e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
            +MG+NV P DVF+A  VDQGGN+ NACR+L +EV+ CNAHRLN+
Sbjct:   11 MMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNS 54
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BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.420e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
            +MG+NV P DVF+A  VDQGGN+ NACR+L +EV+ CNAHRLN+
Sbjct:  339 MMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNS 382
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BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-8
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
             MG++V P DVF+A  VDQGGN+ NAC+ LG+ VV CN HR+NT
Sbjct:  349 FMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNT 392
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BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.420e-8
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
             MG++V P DVF+A  VDQGGN+ NAC  LG++VV CN HR+N+
Sbjct:   15 FMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINS 58
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BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.140e-7
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
             MG++V P DVF+A  VDQG N+ NAC  LG+ VV CN HRLNT
Sbjct:  156 FMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNT 199
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BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.200e-7
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
             MG++V P DVF+A  VDQG N+ NAC  LG+ VV CN HRLNT
Sbjct:  351 FMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNT 394
[Close]
BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.240e-5
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
            LMG +V   DVF+A  VDQG N+ NAC  LG+ VV CN HR+N+
Sbjct:  160 LMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNS 203
[Close]
BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.240e-5
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 3 
Query:   21 LMGDNVIP*DVFVAAVVDQGGNLRNACRDLGLEVVLCNAHRLNT 152
            LMG +V   DVF+A  VDQG N+ NAC  LG+ VV CN HR+N+
Sbjct:  160 LMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNS 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14438.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE4.180e-1065.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.420e-1065.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.830e-861.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE4.420e-859.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE2.140e-761.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.200e-761.36Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JZU3_9PHAE2.240e-556.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE2.240e-556.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14438contigP-wetherbeei_contig14438:1282..1646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size365
Hectar predicted targeting categorymitochondrion
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.8295596-CDS-P-wetherbeei_contig14438:1281..16381683186021.8295596-CDS-P-wetherbeei_contig14438:1281..1638Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14438 1282..1638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.8388672-UTR-P-wetherbeei_contig14438:1638..16461683186021.8388672-UTR-P-wetherbeei_contig14438:1638..1646Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14438 1639..1646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14438.3.1prot_P-wetherbeei_contig14438.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14438 1282..1638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14438.3.1

>prot_P-wetherbeei_contig14438.3.1 ID=prot_P-wetherbeei_contig14438.3.1|Name=mRNA_P-wetherbeei_contig14438.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MVLARPSSWGTTSSHRTFLWRPSSIRVATLGTPAGTWGLKSSCATLTALT
RVTLWALGLSGTTTGRCTVKNAPLRELIAKAAALVGVFSHSVRQRCPAPH
PRPAAGRAALSGTRRHPS*
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mRNA from alignment at P-wetherbeei_contig14438:1282..1646+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14438.3.1 ID=mRNA_P-wetherbeei_contig14438.3.1|Name=mRNA_P-wetherbeei_contig14438.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=365bp|location=Sequence derived from alignment at P-wetherbeei_contig14438:1282..1646+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCTCGCCCGCCCATCCTCATGGGGGACAACGTCATCCCATAGGAC
GTTTTTGTGGCGGCCGTCGTCGATCAGGGTGGCAACCTTAGGAACGCCTG
CCGGGACTTGGGGCTTGAAGTCGTCCTGTGCAACGCTCACCGCCTTAACA
CGTGTCACTCTGTGGGCGCTCGGCCTCTCCGGCACGACTACGGGCCGCTG
CACTGTCAAAAACGCACCGCTGAGGGAGCTGATTGCGAAGGCGGCCGCGC
TCGTCGGCGTCTTTAGCCACTCCGTCCGCCAACGATGCCCTGCGCCTCAT
CCAAGACCAGCTGCTGGGCGCGCCGCTTTGAGTGGAACTCGGAGACATCC
GTCCTAAACCTCATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14438:1282..1646+

>mRNA_P-wetherbeei_contig14438.3.1 ID=mRNA_P-wetherbeei_contig14438.3.1|Name=mRNA_P-wetherbeei_contig14438.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig14438:1282..1646+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCTCGCCCGCCCATCCTCATGGGGGACAACGTCATCCCATAGGAC
GTTTTTGTGGCGGCCGTCGTCGATCAGGGTGGCAACCTTAGGAACGCCTG
CCGGGACTTGGGGCTTGAAGTCGTCCTGTGCAACGCTCACCGCCTTAACA
CGTGTCACTCTGTGGGCGCTCGGCCTCTCCGGCACGACTACGGGCCGCTG
CACTGTCAAAAACGCACCGCTGAGGGAGCTGATTGCGAAGGCGGCCGCGC
TCGTCGGCGTCTTTAGCCACTCCGTCCGCCAACGATGCCCTGCGCCTCAT
CCAAGACCAGCTGCTGGGCGCGCCGCTTTGAGTGGAACTCGGAGACATCC
GTCCTAA
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