mRNA_P-wetherbeei_contig14436.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14436.1.1
Unique NamemRNA_P-wetherbeei_contig14436.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A537CRN6_9PROT (Response regulator n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CRN6_9PROT)

HSP 1 Score: 167 bits (422), Expect = 2.090e-48
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDFVTAR 330
            L+LAR LALTHHERWDG+GYP  + G+ IPWPGRVMA+VDAFE MT TQF+RD MP+E AA EI  G+GK+FDPA+VEAF+K+L    KVR+TYSDALGDM++LDF  AR
Sbjct:  246 LQLARQLALTHHERWDGSGYPERLRGNAIPWPGRVMAIVDAFESMTTTQFYRDAMPIEKAAAEIISGSGKKFDPALVEAFKKALSVMTKVRETYSDALGDMINLDFSPAR 355
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A1F4E436_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4E436_9PROT)

HSP 1 Score: 167 bits (422), Expect = 4.580e-48
Identity = 73/106 (68.87%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDF 318
            LKLAR LAL HHERWDG+GYP G+ G  IPW GRVMA+VDAFE MT+TQF+RDP+P+E AA+EI +GAG QF+P +VEAF+K+LP  +KVR+TYSD LGD+++LDF
Sbjct:  247 LKLARQLALMHHERWDGSGYPQGLKGEAIPWAGRVMAIVDAFESMTSTQFYRDPLPIERAAEEIVKGAGTQFEPKLVEAFKKALPVMKKVRETYSDQLGDLINLDF 352
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A521YII1_9PROT (Response regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YII1_9PROT)

HSP 1 Score: 166 bits (420), Expect = 9.690e-48
Identity = 74/106 (69.81%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDF 318
            LKLAR LALTHHERWDG+GYP G+    IPW GRVMA+VDAFE MT+TQF+RDP+PVE AA+EI +GAG QF+P +VEAF+K+LP  +KVR+TYSD LGD+++LDF
Sbjct:  247 LKLARQLALTHHERWDGSGYPQGLKDEAIPWAGRVMAIVDAFESMTSTQFYRDPIPVERAAEEIIKGAGTQFEPKLVEAFKKALPVMKKVRETYSDQLGDLINLDF 352
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A1Q7P5X0_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium 13_1_40CM_2_68_15 TaxID=1805256 RepID=A0A1Q7P5X0_9DELT)

HSP 1 Score: 155 bits (392), Expect = 7.710e-45
Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDFVTAR 330
            L+LAR LALTHHE WDG+GYP  + G+ IPW GRVMA+ D+FE MT TQF+RD MP+  AA EI   +GK+FDP ++EAF+K+LP   KVR+TYSDALGDM++LDF  AR
Sbjct:  159 LQLARQLALTHHEHWDGSGYPDRLKGNAIPWGGRVMAIADSFESMTTTQFYRDAMPIAKAAAEIISSSGKKFDPTLIEAFKKALPVMTKVRETYSDALGDMINLDFSPAR 268
[Close]
BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A537A5L9_9PROT (Response regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A5L9_9PROT)

HSP 1 Score: 157 bits (398), Expect = 1.670e-44
Identity = 70/106 (66.04%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDF 318
            LKLAR LALTHHE WDG+GYP G+ G  IPW GR MA++DAFE MT TQF RD MPV+ A+ EI   AGK+FDP ++EAF+K+LP  +KVR++YSDALGDM++LDF
Sbjct:  247 LKLARQLALTHHEHWDGSGYPQGLKGEAIPWGGRAMAIIDAFESMTTTQFFRDAMPVDQASAEIVAAAGKKFDPKLIEAFKKALPVMKKVRESYSDALGDMVNLDF 352
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A536XZQ7_9PROT (Response regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XZQ7_9PROT)

HSP 1 Score: 157 bits (397), Expect = 1.690e-44
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDF 318
            LKLAR LALTHHE WDG+GYP G+ G  IPW GRVMAVVDAFE MT TQF+RDP   + AA EI +GAG ++DPA+VEAF+K+ P  +KVRDTY+D+LGDM++LDF
Sbjct:  246 LKLARQLALTHHEHWDGSGYPQGLKGEAIPWSGRVMAVVDAFESMTTTQFYRDPRSPQEAAREILQGAGTKYDPAIVEAFKKAAPVMQKVRDTYADSLGDMVNLDF 351
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A1F4EV93_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EV93_9PROT)

HSP 1 Score: 156 bits (394), Expect = 3.730e-44
Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDF 318
            LKLA  +AL HHE WDG+GYP G+ G  IPW GRVM +VDAFE MT TQF+RD   +E AA EIA GAG +FDP +VEAF+K+LP  RKVR+ YSDALGDM+DLDF
Sbjct:  248 LKLAHQVALAHHEHWDGSGYPQGLKGEAIPWGGRVMGIVDAFESMTTTQFYRDAQTIEQAAAEIAAGAGTKFDPQLVEAFKKALPVMRKVREAYSDALGDMIDLDF 353
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BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: UPI001C733BB9 (response regulator n=1 Tax=Georgfuchsia toluolica TaxID=424218 RepID=UPI001C733BB9)

HSP 1 Score: 133 bits (334), Expect = 2.270e-35
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDF 318
            L++AR +ALTHHERWDG+GYP+G+ G  IPWPGR+MAV DAFE MT+T+ H++ MP+  AA  I + +GKQFDP +V++F+K LP   +V++  SD L  + DL+F
Sbjct:  249 LEIARVMALTHHERWDGSGYPAGLDGQAIPWPGRIMAVADAFEAMTSTRRHQEAMPIREAASRIVKESGKQFDPQVVDSFKKQLPMMIEVKNKISDELEGIHDLNF 354
[Close]
BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A536ZGF0_9PROT (HD domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZGF0_9PROT)

HSP 1 Score: 133 bits (334), Expect = 7.280e-34
Identity = 65/107 (60.75%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDFV 321
            LKLART+ALTHHERWDG GYP  + GS IPW GRVMA+VDAFE MTA       M +E A  EI   AG+QFDP +VEA RK+LPAFRKV + +++   D  D DFV
Sbjct:  207 LKLARTVALTHHERWDGAGYPGRLQGSQIPWAGRVMAIVDAFESMTAPPHGGSAMSIERAVAEIGAAAGQQFDPVLVEALRKALPAFRKVHEAHAEQPADAAD-DFV 312
[Close]
BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Match: A0A1F4ERP7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4ERP7_9PROT)

HSP 1 Score: 126 bits (317), Expect = 6.400e-33
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQFHRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGDMLDLDFVTA 327
            L +AR +AL+HHERWDG GYP+ + G  IP   R++A+ DAFE MTATQ HR P+P + AA ++ + +GKQFDP +V AFRK +P F K+  T++D L  + DLDFV +
Sbjct:  236 LAMARMMALSHHERWDGAGYPNRLGGERIPLSARILALADAFEAMTATQRHRRPIPAQDAASQLVQDSGKQFDPRVVAAFRKVVPQFEKIMATFNDELEGIHDLDFVAS 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14436.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537CRN6_9PROT2.090e-4870.00Response regulator n=3 Tax=Betaproteobacteria bact... [more]
A0A1F4E436_9PROT4.580e-4868.87Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521YII1_9PROT9.690e-4869.81Response regulator n=1 Tax=Betaproteobacteria bact... [more]
A0A1Q7P5X0_9DELT7.710e-4563.64Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A537A5L9_9PROT1.670e-4466.04Response regulator n=1 Tax=Betaproteobacteria bact... [more]
A0A536XZQ7_9PROT1.690e-4467.92Response regulator n=1 Tax=Betaproteobacteria bact... [more]
A0A1F4EV93_9PROT3.730e-4466.98Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI001C733BB92.270e-3554.72response regulator n=1 Tax=Georgfuchsia toluolica ... [more]
A0A536ZGF0_9PROT7.280e-3460.75HD domain-containing protein n=1 Tax=Betaproteobac... [more]
A0A1F4ERP7_9PROT6.400e-3352.29Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14436contigP-wetherbeei_contig14436:1386..1715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1439940.BAY1663_02152
PFAMsHD,Response_reg
Model size330
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K07814
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.24e-27
EggNOG OGsCOG3437@1|root,COG3437@2|Bacteria,1MUB8@1224|Proteobacteria,1RPH3@1236|Gammaproteobacteria
DescriptionResponse regulator containing a CheY-like receiver domain and an HD-GYP domain
Cds size330
COG categoryT
BRITEko00000,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.757606-CDS-P-wetherbeei_contig14436:1385..17151683186021.757606-CDS-P-wetherbeei_contig14436:1385..1715Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14436 1386..1715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14436.1.1prot_P-wetherbeei_contig14436.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14436 1386..1715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14436.1.1

>prot_P-wetherbeei_contig14436.1.1 ID=prot_P-wetherbeei_contig14436.1.1|Name=mRNA_P-wetherbeei_contig14436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
LKLARTLALTHHERWDGTGYPSGIAGSDIPWPGRVMAVVDAFEGMTATQF
HRDPMPVELAADEIARGAGKQFDPAMVEAFRKSLPAFRKVRDTYSDALGD
MLDLDFVTAR
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mRNA from alignment at P-wetherbeei_contig14436:1386..1715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14436.1.1 ID=mRNA_P-wetherbeei_contig14436.1.1|Name=mRNA_P-wetherbeei_contig14436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig14436:1386..1715- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGCTCGCGCGCACCCTCGCGCTGACCCACCACGAGCGCTGGGACGG
GACCGGCTACCCGTCAGGCATCGCCGGCAGCGACATCCCCTGGCCCGGCC
GCGTGATGGCGGTCGTGGACGCCTTCGAGGGCATGACGGCGACCCAGTTC
CATCGCGACCCCATGCCGGTCGAGCTGGCGGCGGACGAGATCGCCCGCGG
CGCCGGCAAGCAGTTCGACCCGGCGATGGTCGAGGCCTTCAGGAAATCGC
TCCCGGCCTTCCGTAAAGTCCGTGACACCTATTCGGATGCGCTGGGCGAC
ATGCTCGACCTCGACTTCGTCACCGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14436:1386..1715-

>mRNA_P-wetherbeei_contig14436.1.1 ID=mRNA_P-wetherbeei_contig14436.1.1|Name=mRNA_P-wetherbeei_contig14436.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig14436:1386..1715- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGCTCGCGCGCACCCTCGCGCTGACCCACCACGAGCGCTGGGACGG
GACCGGCTACCCGTCAGGCATCGCCGGCAGCGACATCCCCTGGCCCGGCC
GCGTGATGGCGGTCGTGGACGCCTTCGAGGGCATGACGGCGACCCAGTTC
CATCGCGACCCCATGCCGGTCGAGCTGGCGGCGGACGAGATCGCCCGCGG
CGCCGGCAAGCAGTTCGACCCGGCGATGGTCGAGGCCTTCAGGAAATCGC
TCCCGGCCTTCCGTAAAGTCCGTGACACCTATTCGGATGCGCTGGGCGAC
ATGCTCGACCTCGACTTCGTCACCGCGCGG
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