mRNA_P-wetherbeei_contig14431.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14431.2.1
Unique NamemRNA_P-wetherbeei_contig14431.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A1F4DEN2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DEN2_9PROT)

HSP 1 Score: 196 bits (498), Expect = 3.590e-59
Identity = 98/171 (57.31%), Postives = 127/171 (74.27%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFALKT 513
            LR+G ++C E+ +GL LR RT   K E V+LF FTQL IG   ++  ++S+++A+S  W VDRTAL  +E  AD+GW + NQ  GF+KL E+RRSIAGRA  V+ IV+SDGLAA+SVF+E MPK+ PA   T+QGAVN+Y +S AD MVTV+GEAPA TV QIAES  L+T
Sbjct:  153 LRYGRQFCVEVRSGLPLRVRTVGGKNEAVELFTFTQLKIGGSFSRDKVKSKYSAKSRHWRVDRTALNVSEQAADTGWVVNNQPPGFKKLMEVRRSIAGRAGSVAQIVFSDGLAAISVFIESMPKARPAQVLTHQGAVNIYTRSFADHMVTVLGEAPAATVMQIAESLELRT 323          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A1F4BG85_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BG85_9PROT)

HSP 1 Score: 194 bits (493), Expect = 1.680e-58
Identity = 96/174 (55.17%), Postives = 126/174 (72.41%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAA--QSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFALKTA 516
            LR+GH++CA++ +GL LRART+SEK E ++ FVFT+L IG   N   + SR+AA  ++  W VD +     E PA++GW L  Q AGF+KLTE++RS AGRA  VSHIVYSDGLAAVSVF+EPMPK  PA    +QGAVN++++  AD +VTV+GEAPA TV QI+ S   + A
Sbjct:  145 LRYGHQFCADVGSGLPLRARTFSEKNEPLESFVFTELKIGGSFNHDRVRSRYAAAAKNRDWKVDHSQFSIAEVPAETGWVLTRQPAGFKKLTELKRSFAGRAAKVSHIVYSDGLAAVSVFIEPMPKGRPAQSLQHQGAVNIFMRPVADHLVTVLGEAPAATVMQISNSLEFRGA 318          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A1F4DIZ9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DIZ9_9PROT)

HSP 1 Score: 194 bits (493), Expect = 2.090e-58
Identity = 94/171 (54.97%), Postives = 124/171 (72.51%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFALKT 513
            LR+G  +C E+ +GL LR RT+ EK E V+ F FTQL +G   N+  ++S++AA+S  W VDR+AL  +E PADSGW + NQ AGF+KL E+RR ++GRA  V+ IV+SDG+AAVSVF+E MPK       T+QGAV++Y +S AD MVTV+GEAPA TV QIA S  L+T
Sbjct:  153 LRYGRHFCVEVRSGLPLRVRTFGEKNETVESFAFTQLMVGGSFNRDKVKSKYAARSQKWRVDRSALNVSERPADSGWVINNQPAGFKKLMEVRRMVSGRADSVAQIVFSDGIAAVSVFIESMPKERQGQTLTHQGAVSIYTRSVADHMVTVLGEAPAATVMQIANSLELRT 323          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A0S8CAW6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8CAW6_9PROT)

HSP 1 Score: 189 bits (479), Expect = 1.870e-56
Identity = 87/167 (52.10%), Postives = 123/167 (73.65%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESF 501
            LR+GH++CAE ++GL LRA+T++EKG+ ++ F FT+L +G   +   ++SR+AA+S  W + R A    E+P  +GW L ++L GFRK+TE +RSIAGR  PVSH+VYSDGLAAVSVF+EP+P+S P    ++QGAVN+YV+   + MVT +GEAP  TV +IA S 
Sbjct:  142 LRYGHEFCAEASSGLPLRAKTFNEKGDVLESFAFTELRLGGKFDHDKVQSRYAAESRDWRIGRAASPSFESPGPTGWGLAHELPGFRKVTESKRSIAGRGAPVSHLVYSDGLAAVSVFIEPLPRSRPPRSLSHQGAVNIYVRLVEEHMVTALGEAPVETVMRIANSL 308          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A7C2UEQ5_9PROT (Transcriptional regulator n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UEQ5_9PROT)

HSP 1 Score: 184 bits (467), Expect = 1.700e-54
Identity = 89/172 (51.74%), Postives = 128/172 (74.42%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAAGA-TYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFALKT 513
            LR+G ++C E+ +GL LR RT++EK + V+ F FTQL +G   ++  ++S++A++S +W +DR+AL   E   ++GW + NQ  GFRKL E++RSIAGR+ PV+ IV+SDGLAA+SVF+EPMP+   A  + T+QGAVN+Y +  AD+MVTV+GEAPA TV QIA S  L+T
Sbjct:  153 LRYGREFCLEVRSGLPLRVRTFNEKNDAVESFAFTQLKLGGRFDRDKVKSKYASRSRNWRIDRSALNVTEKAVETGWIVSNQPPGFRKLMEVKRSIAGRSDPVAQIVFSDGLAAISVFIEPMPQDKTAERSLTHQGAVNIYTRPYADRMVTVLGEAPAATVMQIANSLELRT 324          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A1F3ZXF5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZXF5_9PROT)

HSP 1 Score: 181 bits (458), Expect = 3.620e-53
Identity = 88/167 (52.69%), Postives = 118/167 (70.66%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESF 501
            LR+G  +CAEL +GL LR RT S + E ++ F FTQLTIG    +  + S++A++SH W VDR+AL   E   ++GWA+  Q  GFRKL E++RSIAGRA  V+ I++SDGLAA+SVF+EP+P   P    T+QGAVN+Y +  ADQ+VTV+GEAPA T+ QI  S 
Sbjct:  152 LRYGRDFCAELKSGLPLRVRTISGRNEGLEAFAFTQLTIGGSFRRDRVMSKYASKSHKWRVDRSALSLVEREVETGWAVTRQPPGFRKLLEVKRSIAGRAGAVAQIIFSDGLAAISVFIEPIPGKRPVQTLTHQGAVNIYTRPLADQLVTVLGEAPAATIMQIGNSL 318          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A7V8ZR26_9BURK (MucB/RseB C-terminal domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZR26_9BURK)

HSP 1 Score: 173 bits (439), Expect = 2.510e-50
Identity = 86/169 (50.89%), Postives = 119/169 (70.41%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPPAA-GATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFA 504
            LR+GH++CA   +GL L+A+  +E+ + V+ F FTQLTIG  + K+M+ESRF A+S  W  DRTA    E   D+GW + +  AGFRK+ EM+R I G++ P++H+VYSDGLAAVS+F+EP+P +     G + QGA+N+Y +  AD MVTV+GEAPA TV QI  S A
Sbjct:  157 LRYGHRFCAATDSGLLLKAKMLNERSDVVEQFAFTQLTIGEEIGKEMVESRFDAKSLGWRFDRTATP--EASVDTGWEVSSAPAGFRKIVEMKRVIPGKSGPIAHLVYSDGLAAVSIFIEPVPSNTQFQHGMSQQGAINIYTRRHADNMVTVLGEAPAETVMQIGNSVA 323          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: UPI0019B13A81 (MucB/RseB C-terminal domain-containing protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019B13A81)

HSP 1 Score: 153 bits (387), Expect = 1.540e-42
Identity = 81/169 (47.93%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMP-KSPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFA 504
            +R+GHK+ A++ +GL L+AR  SE+   V+ F FTQ+ IG GV ++M++  F  +   W +DR A     +  +SGW +KN  AGFRK+ EMRRS  G +  V+H+VYSDGLAAVSVF+EP+  ++    G + QGA+N++ K+  DQ+VTV+GEAPA TV QIA S +
Sbjct:  156 MRYGHKFWADINSGLLLKARMMSERHNVVEQFSFTQVVIGGGVTREMVQPSFNIKFPEWRLDRFA-NNAISEVESGWTVKNFPAGFRKILEMRRSKQGNSVLVTHMVYSDGLAAVSVFIEPVATRNKINEGLSQQGAINIFTKTVNDQLVTVLGEAPAATVMQIANSVS 323          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A317H4J6_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317H4J6_9PROT)

HSP 1 Score: 152 bits (385), Expect = 3.070e-42
Identity = 84/171 (49.12%), Postives = 112/171 (65.50%), Query Frame = 1
Query:    4 RFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPKSPP-AAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFALKT 513
            R+GHK  A+ ATGL L+AR   E    V+ FVFTQLTIG+ V K  +     A +  W  D  A+E +  PA++GW++  Q AGFRK+ EM+RS  G    V+H+VYSDGLAAVSVF+EP+  +     G  +QGAVN+Y +  +DQ+VTV+GEAPA TV Q+A S   K+
Sbjct:  158 RYGHKLWADTATGLLLKARMLDEHSHVVEQFVFTQLTIGDAVTKDAVAPSVKAGTPGWRWD--AVEADAGPAETGWSVGVQPAGFRKIMEMKRSRTGSQARVAHLVYSDGLAAVSVFIEPLSTARTYQEGLAHQGAVNIYTRRLSDQLVTVLGEAPAATVMQMANSVGPKS 326          
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Match: A0A4R3YG78_9PROT (MucB/RseB-like sigma(E) regulatory protein n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3YG78_9PROT)

HSP 1 Score: 152 bits (384), Expect = 4.020e-42
Identity = 78/171 (45.61%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    1 LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIESRFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRATPVSHIVYSDGLAAVSVFLEPMPK-SPPAAGATYQGAVNMYVKSTADQMVTVVGEAPAHTVKQIAESFALK 510
            LR+ HKY A++ATGL L+A   +  GE +D F FTQLTIG  ++K   + + A +  +W  D + +  +    D+GW +K  L GF K+ E++RS+ G+  PVSH+VYSDGL+ VSVF+EP+   + P  G   QG +N+Y  S AD  +TV+GE PA TVKQIA S + K
Sbjct:  152 LRYSHKYWADIATGLLLKATLLNTNGEAIDQFTFTQLTIGGPIDKSQFKPKPAWKKLTWKTDESTIV-DANAHDTGWEIKQPLPGFNKIVELKRSMPGKKMPVSHLVYSDGLSTVSVFIEPLSGIAHPMQGLASQGVLNVYATSLADFQITVIGEVPAVTVKQIATSMSNK 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14431.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4DEN2_9PROT3.590e-5957.31Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4BG85_9PROT1.680e-5855.17Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DIZ9_9PROT2.090e-5854.97Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8CAW6_9PROT1.870e-5652.10Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C2UEQ5_9PROT1.700e-5451.74Transcriptional regulator n=1 Tax=Betaproteobacter... [more]
A0A1F3ZXF5_9PROT3.620e-5352.69Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7V8ZR26_9BURK2.510e-5050.89MucB/RseB C-terminal domain-containing protein n=1... [more]
UPI0019B13A811.540e-4247.93MucB/RseB C-terminal domain-containing protein n=1... [more]
A0A317H4J6_9PROT3.070e-4249.12Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A4R3YG78_9PROT4.020e-4245.61MucB/RseB-like sigma(E) regulatory protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14431contigP-wetherbeei_contig14431:1191..1715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1266925.JHVX01000002_gene1082
Preferred namerseB
PFAMsMucB_RseB,MucB_RseB_C
Model size525
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03598
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-33
EggNOG OGsCOG3026@1|root,COG3026@2|Bacteria,1MUQ8@1224|Proteobacteria,2VMZQ@28216|Betaproteobacteria,3728Y@32003|Nitrosomonadales
DescriptionMucB/RseB C-terminal domain
Cds size525
COG categoryT
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.5484638-CDS-P-wetherbeei_contig14431:1190..17151683186021.5484638-CDS-P-wetherbeei_contig14431:1190..1715Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14431 1191..1715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14431.2.1prot_P-wetherbeei_contig14431.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14431 1191..1715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14431.2.1

>prot_P-wetherbeei_contig14431.2.1 ID=prot_P-wetherbeei_contig14431.2.1|Name=mRNA_P-wetherbeei_contig14431.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
LRFGHKYCAELATGLALRARTYSEKGEQVDLFVFTQLTIGNGVNKKMIES
RFAAQSHSWHVDRTALERNETPADSGWALKNQLAGFRKLTEMRRSIAGRA
TPVSHIVYSDGLAAVSVFLEPMPKSPPAAGATYQGAVNMYVKSTADQMVT
VVGEAPAHTVKQIAESFALKTADR*
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mRNA from alignment at P-wetherbeei_contig14431:1191..1715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14431.2.1 ID=mRNA_P-wetherbeei_contig14431.2.1|Name=mRNA_P-wetherbeei_contig14431.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig14431:1191..1715- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTTTGGCCACAAGTATTGCGCCGAACTCGCGACCGGGCTTGCGTT GCGCGCCCGCACTTACAGCGAAAAAGGCGAGCAGGTCGATTTGTTCGTGT TCACCCAGTTGACCATAGGCAACGGCGTCAACAAAAAAATGATCGAATCC CGCTTCGCCGCACAAAGCCACTCATGGCACGTTGATCGCACGGCGCTGGA GCGCAACGAAACGCCCGCGGACAGCGGCTGGGCGCTGAAGAACCAGCTCG CGGGATTCAGGAAGCTCACCGAAATGCGGCGCTCGATTGCCGGCCGCGCC ACGCCGGTGTCGCATATCGTCTACTCGGATGGCCTTGCCGCGGTATCGGT ATTTCTGGAGCCGATGCCGAAGTCCCCGCCGGCCGCGGGTGCAACCTACC AGGGTGCCGTCAACATGTATGTGAAATCGACCGCGGACCAGATGGTGACC GTGGTCGGTGAGGCGCCGGCGCACACCGTCAAACAGATTGCCGAGTCGTT TGCATTGAAGACCGCCGATCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14431:1191..1715-

>mRNA_P-wetherbeei_contig14431.2.1 ID=mRNA_P-wetherbeei_contig14431.2.1|Name=mRNA_P-wetherbeei_contig14431.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig14431:1191..1715- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCTTTGGCCACAAGTATTGCGCCGAACTCGCGACCGGGCTTGCGTT
GCGCGCCCGCACTTACAGCGAAAAAGGCGAGCAGGTCGATTTGTTCGTGT
TCACCCAGTTGACCATAGGCAACGGCGTCAACAAAAAAATGATCGAATCC
CGCTTCGCCGCACAAAGCCACTCATGGCACGTTGATCGCACGGCGCTGGA
GCGCAACGAAACGCCCGCGGACAGCGGCTGGGCGCTGAAGAACCAGCTCG
CGGGATTCAGGAAGCTCACCGAAATGCGGCGCTCGATTGCCGGCCGCGCC
ACGCCGGTGTCGCATATCGTCTACTCGGATGGCCTTGCCGCGGTATCGGT
ATTTCTGGAGCCGATGCCGAAGTCCCCGCCGGCCGCGGGTGCAACCTACC
AGGGTGCCGTCAACATGTATGTGAAATCGACCGCGGACCAGATGGTGACC
GTGGTCGGTGAGGCGCCGGCGCACACCGTCAAACAGATTGCCGAGTCGTT
TGCATTGAAGACCGCCGATCGTTGA
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