mRNA_P-wetherbeei_contig14427.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A6H5JHY1_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY1_9PHAE) HSP 1 Score: 178 bits (451), Expect = 4.520e-47 Identity = 106/200 (53.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query: 305 NLIVPELRLTPVATQYDLRAIAIPQGTVLYHDHTVPSLEPSFLYHFRQASTQARSAKLAAMRADLQEVSAAEPGAKFVVFSQFQGVLDAAAAALRLDGIGHVTIGGSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALRNDSGD 904
+L++P R TP AT L AIP + D+TVPSLE +FL +R A++ S KL A+ DL +P AKFV+FSQ+ V+D A L GI +I G R +AV SF+ D ++R ILLTTG+AAAGLTLTAA +YMLDP SAADEAQ+L RAHRIGQT VRCV+FYM++SVEERLLALR+ G+
Sbjct: 188 SLVIPTFRFTPTATAAQLSG-AIPPPVMFPRDNTVPSLEQTFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGN 386
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 150 bits (378), Expect = 5.110e-36 Identity = 94/200 (47.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query: 305 NLIVPELRLTPVATQYDLRAIAIPQGTVLYHDHTVPSLEPSFLYHFRQASTQARSAKLAAMRADLQEVSAAEPGAKFVVFSQFQGVLDAAAAALRLDGIGHVTIGGSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALRNDSGD 904
+L++P R TP AT +FL +R A++ S KL A+ DL +P AKFV+FSQ+ V+D A L GI +I G R +AV SF+ D +++ ILLTTG+AAAGLTLTAA +YMLDP SAADEAQ+L RAHRIGQT VRCV+FYM++SVEERLLALR+ G+
Sbjct: 1307 SLVIPTFRFTPTATA-------------------------TFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIKVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGN 1481
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A835YV89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV89_9STRA) HSP 1 Score: 146 bits (368), Expect = 4.090e-35 Identity = 100/207 (48.31%), Postives = 125/207 (60.39%), Query Frame = 2
Query: 353 DLRAIAIPQGTVLY-HDHTVPSLEPSFLYHFRQASTQ-ARSAKLAAMRADLQEVSAAEPGAKFVVFSQFQGVLDAAAAALRLDGIGHVTIGGSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQ----------------------SLARAHRIGQTQAVRCVIFYMRNSVEERLLALRNDSG 901
DL+AI P G L+ D + PSL+P FL H+R AS A AKL A+ D++ V EP AKFVVFS L AA L + VTI G+ RR AV F+TD +VR +LL G+AAAGLTLTAA +YML+P+ +AADEAQ +L+RAHRIGQT +VRCVIFY ++EERLLALR++SG
Sbjct: 385 DLQAIPPPPGAPLHLRDPSAPSLDPLFLAHWRAASAAGAVGAKLRALIGDMRAVLRREPAAKFVVFSAAAEALAKAAEELNRATLKCVTISGAVSVARRGAAVTEFNTDPSVRVVLLAMGSAAAGLTLTAASTVYMLEPAFNAADEAQXXXXXXXXXEAQPXXXXXXXXXALSRAHRIGQTHSVRCVIFYCAGTLEERLLALRHESG 591
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A4D9D770_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D770_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.010e-23 Identity = 77/197 (39.09%), Postives = 112/197 (56.85%), Query Frame = 2
Query: 314 VPELRLTPVATQYDLRAIAIPQGTVLYHDHTVPSLEPSFLYHFRQASTQARSAKLAAMRADLQEVSAAEPGAKFVVFSQFQGVLDAAAAALRLDGIGHVTIGGSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQT-QAVRCVIFYMRNSVEERLLALRNDSG 901
+P++ P A + L+ + P D+++PSLEP+FL H+R S SAK+ A+ L+ +++P AKFVVFSQF L G V++ RQ AV +FS+D V+ IL+ G AAGLTLTAA L +L+PS + DEAQ+++R HRIGQ +V + + +VEER+L +R D G
Sbjct: 544 IPQVGCPPAADEATLQRLPAPFACG--RDNSLPSLEPAFLAHYRNTS-MVPSAKMQALVGILESTLSSDPSAKFVVFSQFP--FTTVKPCLDQHGFACVSVTAQCKMADRQQAVGAFSSDPDVKVILVGMGVGAAGLTLTAASTLILLEPSHNLGDEAQAMSRIHRIGQAASSVEIFVLFTPRTVEERMLKVRQDQG 735
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC) HSP 1 Score: 104 bits (259), Expect = 1.660e-20 Identity = 83/224 (37.05%), Postives = 117/224 (52.23%), Query Frame = 2
Query: 323 LRLTPVATQYDLRAIAIPQGT--VLYHDHTVPSLEPS---FLYHFRQASTQARSAKLAAMRADLQEVSAAEPGA-KFVVFSQFQGVLDAAAAALRLDGIGHVTIG-----GSADARRR----------------QNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALRNDSGDGGA 913
+R TP A + + +P G Y D P+L FL H +AS + +S K++A+ DL+E AA G+ K VVFSQ + L A LR +GIG ++G G + + A+ F D A + +LL G+AAAGLTLT A ++ +L+P S DEAQ+ R HRIGQT+ VRCV +++ +VEERLLA R + GA
Sbjct: 1432 VRFTPAARPSEFSRLPLPDGENPADYRDGRYPALSMDGGRFLAHLHRASMR-QSPKMSALVRDLREALAAPGGSGKAVVFSQLRDALAHAEQVLRWEGIGCESVGVHNRGGGVNXXXXXXXXXXXXXXXXXXXXEGAIARFRDDPATQVLLLHAGSAAAGLTLTQADLVVLLEPFLSPGDEAQAANRVHRIGQTRPVRCVTYFVEGTVEERLLAFRTRQREFGA 1654
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A7S0S928_9CHLO (Hypothetical protein (Fragment) n=3 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S928_9CHLO) HSP 1 Score: 102 bits (254), Expect = 5.900e-20 Identity = 82/212 (38.68%), Postives = 117/212 (55.19%), Query Frame = 2
Query: 323 LRLTPVATQYDLRAIAIPQGT--VLYHDHTVPSLEPS---FLYHFRQASTQARSAKLAAMRADLQEVSAAEPGA--KFVVFSQFQGVLDAAAAALRLDGIGHVTIG----------------GSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALR 889
+R + AT + + +P+G Y + P+L FL H +A+ + RS K+ A+ ADL+E + PGA K VVFSQ + L A AAL +GIG ++G G+ + A+ F D V+ +LL G+AAAGLTLT A ++ +L+P SA DEAQ+ R HRIGQT+ VRCV +++ +VEERLLA R
Sbjct: 639 VRFSAAATPAEFGRLPLPRGEDPAQYRSGSFPALSMDGGYFLAHCHRAAMR-RSPKINALVADLRE-ALNRPGAAGKVVVFSQQRDALAHADAALTGEGIGTESVGVKGVRSAARDGAVAGGGAGKQGDYEGAIQRFRDDPDVKVLLLHAGSAAAGLTLTQADLVVLLEPFLSAGDEAQAANRVHRIGQTRPVRCVTYFVEGTVEERLLAYR 848
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A7S0PUJ4_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PUJ4_MICPS) HSP 1 Score: 98.2 bits (243), Expect = 1.660e-19 Identity = 81/223 (36.32%), Postives = 114/223 (51.12%), Query Frame = 2
Query: 326 RLTPVATQYDLRAIAIPQGT--VLYHDHTVPSLEPS---FLYHFRQASTQARSAKLAAMRADLQEVSAAEPGA--KFVVFSQFQGVLDAAAAALRLDGIG--------------------HVTIGGSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALRNDSGDGGA 913
R TP A + + +P+G Y D P+L FL H +A+ + +S K++A+ DL+E S A PG K VVFSQ + L A LR +GIG + + A+ F D +V+ +LL G+AAAGLTLT A ++ +L+P S DEAQ+ R HRIGQT+ VRCV +++ +VEERLLA R + GA
Sbjct: 2 RSTPPARPSEFSRLPLPRGENPADYRDGRYPALSMDGGRFLAHLHRAAMR-QSPKMSALVRDLRE-SLASPGGSGKAVVFSQLRDALAHAEQVLRWEGIGCESXXXXXXXXXXXXXXXXXXXXXXXXXXSNSGEGAIARFRDDPSVQVLLLHAGSAAAGLTLTQADLVILLEPFLSPGDEAQAANRVHRIGQTRPVRCVTYFVEGTVEERLLAFRTRQREFGA 222
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A7S0GPK4_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GPK4_MICPS) HSP 1 Score: 100 bits (249), Expect = 2.310e-19 Identity = 78/197 (39.59%), Postives = 105/197 (53.30%), Query Frame = 2
Query: 428 FLYHFRQASTQARSAKLAAMRADLQEVSAAEPGA--KFVVFSQFQGVLDAAAAALRLDGIGHVTIGGSA--------DARRRQNAVVS-----------------------FSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALRNDSGDGGASS 919
FL H +A + RS K+AA+ ADL+ A PGA K VVFSQ + L + AL +G+G+ + G+A A R +NA + F D A R +LL G AAAGLTLT A ++ +L+P S DEAQ+ R HRIGQT+AVRCV +++R +VEERLLA R + G +
Sbjct: 431 FLAHVHRACAR-RSPKIAALVADLRS-HFATPGASGKAVVFSQLRDALSKVSEALTWEGVGNALVDGNATSSSSAGRSASRHRNAATASDDNDGNVVPVRPEDAAASAVRRFRDDPACRVLLLHAGTAAAGLTLTHADLVILLEPFLSPGDEAQAANRVHRIGQTRAVRCVTYFVRGTVEERLLAFRERQAEFGGEA 625
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A7S3NHU0_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHU0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.450e-17 Identity = 63/166 (37.95%), Postives = 93/166 (56.02%), Query Frame = 2
Query: 410 PSLEPSFLYHFRQASTQARSAKLAAMRADLQEVSAAEPGAKFVVFSQFQGVLDAAAAALRLDGIGHVTI------GGSADARRRQNAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALR 889
P++ L + A QA SAK+A + +D++ + +P K VVF+ + ++ AA L L GIGH T+ G S RR QN D ++ G AAAGLTLTAA +++L+P S E Q++ R HRIGQ + V + +++RNS+EER+LA R
Sbjct: 1377 PNIPLELLRYLSVARQQAHSAKIALLISDIKRILRDDPCEKMVVFTTIRAAVEHVAADLYLSGIGHETLVTGNSSGISDRVRRWQN-------DDTCNVFVVNAGVAAAGLTLTAARYMFLLEPFLSKGQEIQAMNRCHRIGQEREVHTITYFVRNSIEERILAYR 1535
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Match: A0A8J5XH39_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH39_DIALT) HSP 1 Score: 94.4 bits (233), Expect = 3.560e-17 Identity = 82/202 (40.59%), Postives = 104/202 (51.49%), Query Frame = 2
Query: 332 TPVAT--QYD--------LRAIAIP-----QGTVLYHDHTVPSLEPSFLYHFRQASTQARSAKLAAMRADLQEVSAAEPGAKFVVFSQFQGVLDAAAAALRLDGIGHVTIGGSADARRRQ-NAVVSFSTDRAVRAILLTTGAAAAGLTLTAAHVLYMLDPSPSAADEAQSLARAHRIGQTQAVRCVIFYMRNSVEERLLALR 889
TP AT QY+ L A AIP +L H LEP + Q RSAKL + ADL V A K VV S + +++ + AL DG+GH + SA R Q AV ++ D A+ LL G AAAGLTL AAH +++LD P A+E Q+L R HRIGQ V C ++Y +VEERLLA R
Sbjct: 1479 TPAATRAQYEACPPAREALMARAIPALPLFDARLLDHLCAATGLEPPAPPNASQPRAH-RSAKLRRLLADLAPVLARRE--KAVVLSAHRLMIEYVSRALADDGVGHRKVCASAGRREAQARAVSEWAADPALPVFLLHAGVAAAGLTLVAAHHVFLLDVLPYEAEEQQALNRCHRIGQRHDVTCTVYYAPGTVEERLLAFR 1677 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14427.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14427.1.2 >prot_P-wetherbeei_contig14427.1.2 ID=prot_P-wetherbeei_contig14427.1.2|Name=mRNA_P-wetherbeei_contig14427.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=372bp MPAVCGIWNNIFCRGGGGSSSGGGDSSSGGGGSSSGSGGGDASGSGGGGGback to top mRNA from alignment at P-wetherbeei_contig14427:97..1592- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14427.1.2 ID=mRNA_P-wetherbeei_contig14427.1.2|Name=mRNA_P-wetherbeei_contig14427.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1496bp|location=Sequence derived from alignment at P-wetherbeei_contig14427:97..1592- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14427:97..1592- >mRNA_P-wetherbeei_contig14427.1.2 ID=mRNA_P-wetherbeei_contig14427.1.2|Name=mRNA_P-wetherbeei_contig14427.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1116bp|location=Sequence derived from alignment at P-wetherbeei_contig14427:97..1592- (Phaeothamnion wetherbeei SAG_119_79)back to top |