mRNA_P-wetherbeei_contig1440.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1440.4.1
Unique NamemRNA_P-wetherbeei_contig1440.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A835YIR1_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR1_9STRA)

HSP 1 Score: 236 bits (603), Expect = 9.040e-70
Identity = 128/256 (50.00%), Postives = 161/256 (62.89%), Query Frame = 1
Query:    1 PGAICLWARARDGAVGGLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLDNNRLMTQYGF 768
            PG +CLW+  RDG VGGLQGQT+L W+ AGDLR PV D   A GLTWDVRLALAL +ATAD   GG FW  Y R LP PH VTVPLC P ALL+E+ +  +A RA+ Q+ RL  LFPL+  + + HP TA Y+                                 ++P ALQWAFALVRSRAF+AG     ++FAFVPFLD ANH+  P A+F +D+A   ++LT L  + A ++  ISYG++LD+ +L TQYGF
Sbjct:   14 PGNLCLWSN-RDGVVGGLQGQTDLCWDQAGDLRDPVDDTSYAKGLTWDVRLALALQDATADIAVGGQFWDLYGRLLPAPHEVTVPLCLPSALLKEMQHAQLARRAQAQKDRLSGLFPLMMQTHMAHPRTACYSALGPGVLQ-------------------------SLPFALQWAFALVRSRAFSAGN----DQFAFVPFLDMANHNSNPNANFTFDSAIGSFKLTALTDVKADSQVYISYGQALDDGKLATQYGF 239          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A7S4D535_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D535_HETAK)

HSP 1 Score: 195 bits (496), Expect = 6.440e-53
Identity = 115/272 (42.28%), Postives = 145/272 (53.31%), Query Frame = 1
Query:    1 PGAICLWARARDGAVG-GLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLDNNRLMTQYGFVLPGNPVAAVLSGFE 813
            PG +C+WA  RDG +  GL GQ+++ W  AGDLR    D   A GLTWD+RLA+AL EA ++    G FW  Y   LP PHTVT+PLCFP  L  E+ N  M   A QQQ RL   +P L      HP    Y                                 +++P AL W FALVRSR F+A      E FAFVPFLD  NH  +P AD+ Y+ A D + L  L P+ +G E  ISYG+ L N+ LM +YGFV+ GNP A+ L  ++
Sbjct:  121 PGRLCIWAN-RDGTIDRGLDGQSDMTWAVAGDLRADYPDLLRAQGLTWDLRLAVALLEAASEQRCAGGFWDVYGFMLPAPHTVTMPLCFPQELTAEVQNPFMMKAAGQQQVRLESHYPTLVKPNY-HPKLKIYQDLGMT---------------------------SSVPNALMWCFALVRSRCFSASP----ERFAFVPFLDMCNHWVKPNADYSYNEATDSFDLVALKPIRSGDEILISYGQGLSNDDLMVRYGFVIEGNPHASALMNYK 359          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: D7FNM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNM5_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.640e-49
Identity = 139/353 (39.38%), Postives = 177/353 (50.14%), Query Frame = 1
Query:  133 LTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHS-PRPAADFGYDAAADE----WRLTTLAPLPAGAEATISYGKSLDNNRLMTQYGFVLPGN-PVAAVLSGFESPPARPPLVAS-----SSGAAGATVANA------------------------------ASGERDGGVGDLRNELFARAQEFIASAGGGGSGRGADQQQYEQLARRAVPLIPVLAAQIAAL 1068
            +TWDVRLALAL EAT+DP  GG FW  Y R LP PHTVTVP C P  LL +LHN  MA RA +Q +R+R L+P L  +LL HP TA YAT                                A+P AL WAFA+VRSRAFAA      + FAFVPFLD ANH    PAA+F Y +  +     ++L  +  + AG E TISYG+ L+  +LM QYGF  P N P+   L G ++       VA+     ++GAA AT                                  +  ER G    L NELF RAQ+  A   GG      D++++E   R+ +PL+P +A +I  L
Sbjct:    1 MTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRSLYPDLMRTLLSHPKTAVYATRKTAEGEAAAAAGETATAAATKEAAEKETD--AVPMALLWAFAMVRSRAFAADG----DRFAFVPFLDMANHGFADPAANFTYISGGESQPGVFQLQAMRNISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLELPLCGSDALVRDTVAVATEEVKETAGAATATAXXXXXVXXXXXXXXXXXXXXXXXXXXRGSRGALSEAERVG----LMNELFLRAQQRFAREAGG------DERRFEIGVRKVLPLVPPIATKIGEL 337          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: R1CZ63_EMIHU (SET domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZ63_EMIHU)

HSP 1 Score: 167 bits (423), Expect = 5.830e-43
Identity = 108/249 (43.37%), Postives = 129/249 (51.81%), Query Frame = 1
Query:   31 RDGAVGGLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLF-PLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLDNNRLMTQYGFVL 774
            R GA+GGL GQT+L+W+AAGDLR  V +     G TWDVRLALA+ EATA    GG  W  YRRFLPLPH ++ P+C P  LL EL    +A  A  + + L  L+ PL+      HPATA Y                                   +P  L WA+ALV SR FA    SG + F FVPFLD   HS  P+A+F  D       L TL P+ AG E TISYG    + R   QYGFVL
Sbjct:  105 RSGAIGGLAGQTDLVWDAAGDLREEVGEAMFKRGATWDVRLALAVLEATAG--CGGELWDAYRRFLPLPHELSSPVCLPAELLAELREPAVASAAAARNELLADLYAPLMAHE--AHPATAGYVARGGEAAR------------------------GLVPAPLSWAYALVSSRCFAL---SGGDTFGFVPFLDMCQHSAVPSANFTSDERGIV--LRTLRPVAAGEEVTISYGGDYSSRRTFEQYGFVL 320          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A0M0JQY2_9EUKA (Ribulose-bisphosphate carboxylase oxygenase large subunit n-chloroplast n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQY2_9EUKA)

HSP 1 Score: 158 bits (400), Expect = 1.940e-39
Identity = 106/257 (41.25%), Postives = 136/257 (52.92%), Query Frame = 1
Query:    1 PGAICLWARARDGAVGGLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLDNNRLMTQYGFV 771
            P ++ L A  R G +GGLQGQTE++WEAAGDLR  V +E    G TWDVRLALA++EATA     G FW  YR+ +P P ++T PLC P A+L EL N ++  + + ++   + L P L +    HP TA Y                                   +P  L +A+ALV SR FA   A G + FAFVPFLD A H+  P A+F  DA  D   LT LA L  G E TI+Y     + +L  QYGFV
Sbjct:   92 PASLLLTAH-RSGRIGGLQGQTEVMWEAAGDLREEVGEELFQRGATWDVRLALAVYEATAG--GAGGFWDDYRKLMPPPPSMTHPLCLPQAMLPELQNVELQAKVQAKRALFQDLHPSLHAHA-THPVTASYTNRGFPMEY--------------------------IPRPLPYAYALVVSRCFAM--ADG-DTFAFVPFLDMAQHADVPTANFRVDAQ-DGATLTALADLKPGEEVTINYDPDYSSEQLFAQYGFV 314          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A7S0NTJ5_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTJ5_9EUKA)

HSP 1 Score: 152 bits (385), Expect = 1.340e-37
Identity = 104/258 (40.31%), Postives = 133/258 (51.55%), Query Frame = 1
Query:    1 PGAICLWARARDGAVGGLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISY-GKSLDNNRLMTQYGFV 771
            P  +CL A  R G +GGL GQT+ + +AAGDLR  V +E    G TWDVRLALA+ EATA    GGPFW  YRR LPLP   T     PP LL EL +  +  R   +   LR L+P L +   VHP T+ YA                                  +P  LQW ++LV SR FA    +  + FAFVPFLD   HS  P+A+F   ++  ++ L+TL  + AG   TISY G + D+ R+   YGFV
Sbjct:   56 PSELCLTAH-RSGVIGGLIGQTDAMVDAAGDLRDEVGEEAFNQGATWDVRLALAVFEATAG--CGGPFWDEYRRLLPLPPFATAAASLPPVLLEELQDPVLQKRGLAKDALLRELYPSLATHS-VHPVTSSYAAM--------------------------DAPLELVPLPLQWTYSLVVSRCFAM---ADEDTFAFVPFLDMCQHSASPSANF--TSSDGDFVLSTLRRMQAGEAVTISYDGDAYDSRRMFELYGFV 278          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A7S4F9T8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9T8_CHRCT)

HSP 1 Score: 136 bits (342), Expect = 6.910e-32
Identity = 93/247 (37.65%), Postives = 123/247 (49.80%), Query Frame = 1
Query:   31 RDGAVGGLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISY-GKSLDNNRLMTQYGF 768
            R G V GL GQT+++ +AAGDLR  V ++    G TWDVRLALA+ EATA    GGPFW  YR+ LPLP         P  L+ EL +  +  RA+Q+   L  L+P L S    HPATA Y                                   +P+ L W  ++V SR F+    +  + FAFVPFLD   H+  P A+F   + + ++ LT L P+ AG E TISY G    + R+   YGF
Sbjct:  157 RSGVVSGLIGQTDVMLDAAGDLRSEVGEKMFERGATWDVRLALAVFEATAG--CGGPFWDRYRQLLPLPPFSMSAASLPEFLIDELQDPVLEQRAKQKASMLVSLYPAL-SQHAAHPATAMYIRMGAPLEM--------------------------IPSPLAWCHSMVVSRCFSM---ADVDTFAFVPFLDMCQHAEAPTANFS--SVSGDFELTALRPIEAGEEITISYDGNEYASRRMFELYGF 369          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A2P6V4L4_9CHLO (Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4L4_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 3.940e-30
Identity = 103/252 (40.87%), Postives = 121/252 (48.02%), Query Frame = 1
Query:   70 LIWEAAGDLRVPV-------TDEQAADGLTWDVRLALALHEATADPMAGG--PFWAHYRR-FLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSP-RPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLD--NNRLMTQYGFVLPGNP 786
            L+ + A  LRVP           Q  D L WDV  ALAL     D +AGG   FW  Y    LP P  +T+PLCFPPALL EL ++ +A  A  QQQRL  LFP L+SS+                                          A  PT LQW F  VRSRAF  G     + FA VPFLD ANH+P +P+ DF   +     +L  L  L  G EATISY  + D  N RLM QYGFVLPG+P
Sbjct:    5 LVVDYAAGLRVPPGAWPRLRKGVQKDDSLPWDVLQALAL----LDGLAGGGDAFWERYSNAVLPAPTQLTLPLCFPPALLPELQHEAIASAAAVQQQRLAGLFPGLSSSMA-----------------------------------------ADGPTWLQWGFGCVRSRAFKLGP----DCFASVPFLDLANHAPGQPSCDFRLSSDGSAVQLVALQELAPGQEATISYTGADDTTNQRLMAQYGFVLPGSP 207          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A7S1NQL8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQL8_9EUGL)

HSP 1 Score: 120 bits (300), Expect = 1.370e-27
Identity = 87/229 (37.99%), Postives = 105/229 (45.85%), Query Frame = 1
Query:  136 TWDVRLALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLDNNRLMTQYGFVLPGNPVAAVLSGFESPP 822
            TWD+RLA+ L EA     +  PFWA Y   +    T+  P+   P LL EL ++DMA  A QQQQRLR LFP +   +   PA  F                                     P+ L W +ALVRSR F AG     + FAFVPFLD ANH   P ADF Y      + L  +  +    E TISYG + DN RL  QYGFV PG      L G +  P
Sbjct:   14 TWDIRLAIKLLEAIDGRWS--PFWASYGELMQPYLTMANPMLLYPQLLVELQHEDMADAAVQQQQRLRDLFPDMVPGVYA-PAEEF-------------------------------------PSPLMWTWALVRSRCFTAGE----QAFAFVPFLDMANHLEIPNADFEYAPQDSCFYLRAVRQIRQNEEVTISYGAAYDNRRLFAQYGFVEPGGNPYDTLPGMDGLP 198          
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Match: A0A2P6TPH9_CHLSO (Set domain n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TPH9_CHLSO)

HSP 1 Score: 120 bits (302), Expect = 4.510e-26
Identity = 89/226 (39.38%), Postives = 105/226 (46.46%), Query Frame = 1
Query:  118 QAADGLTWDVRLALALHEATADPMAGG--PFWAHYR-RFLPLPHTVTVPLCFPPALLRELHNDDMAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPFLDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYG--KSLDNNRLMTQYGFVLPG 780
            Q  D L WD+  ALAL     D +AGG  PFW  Y    LP P  +T+PLCFP  LL EL +  +   A+ QQQRL  LFP L+ ++                                             P+ LQW+FA VRSRAF        + F FVPFLD ANH+P P+ DF   A      L  L PL AG EATISY     + N RLM QYGFV  G
Sbjct:   94 QKDDSLPWDILQALAL----LDALAGGADPFWERYAAEVLPAPLALTLPLCFPAELLPELQHGAIIAAAQAQQQRLAALFPGLSGAMC-----------------------------------------EGGPSWLQWSFACVRSRAFELRK----DCFGFVPFLDGANHAPDPSCDFRLSADGHAVELVALHPLQAGDEATISYTGPAGMTNQRLMAQYGFVFTG 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1440.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIR1_9STRA9.040e-7050.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4D535_HETAK6.440e-5342.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FNM5_ECTSI2.640e-4939.38SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
R1CZ63_EMIHU5.830e-4343.37SET domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A0M0JQY2_9EUKA1.940e-3941.25Ribulose-bisphosphate carboxylase oxygenase large ... [more]
A0A7S0NTJ5_9EUKA1.340e-3740.31Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A7S4F9T8_CHRCT6.910e-3237.65Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A2P6V4L4_9CHLO3.940e-3040.87Ribulose-1,5 bisphosphate carboxylase oxygenase la... [more]
A0A7S1NQL8_9EUGL1.370e-2737.99Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A2P6TPH9_CHLSO4.510e-2639.38Set domain n=1 Tax=Chlorella sorokiniana TaxID=307... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1440contigP-wetherbeei_contig1440:5450..7184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNM5
PFAMsRubis-subs-bind,SET
Model size1446
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.32e-50
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-01_004930.1
Descriptionpeptidyl-lysine monomethylation
Cds size1446
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.7357116-CDS-P-wetherbeei_contig1440:5449..62861683186020.7357116-CDS-P-wetherbeei_contig1440:5449..6286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1440 5450..6286 -
1683186020.7539768-CDS-P-wetherbeei_contig1440:6512..66741683186020.7539768-CDS-P-wetherbeei_contig1440:6512..6674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1440 6513..6674 -
1683186020.7736957-CDS-P-wetherbeei_contig1440:6737..71841683186020.7736957-CDS-P-wetherbeei_contig1440:6737..7184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1440 6738..7184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1440.4.1prot_P-wetherbeei_contig1440.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1440 5450..7184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1440.4.1

>prot_P-wetherbeei_contig1440.4.1 ID=prot_P-wetherbeei_contig1440.4.1|Name=mRNA_P-wetherbeei_contig1440.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=482bp
PGAICLWARARDGAVGGLQGQTELIWEAAGDLRVPVTDEQAADGLTWDVR
LALALHEATADPMAGGPFWAHYRRFLPLPHTVTVPLCFPPALLRELHNDD
MAGRAEQQQQRLRRLFPLLTSSLLVHPATAFYATAAKAAAAAAANAATAR
AAAAAAAAAATAARAAAMPTALQWAFALVRSRAFAAGAASGFEEFAFVPF
LDQANHSPRPAADFGYDAAADEWRLTTLAPLPAGAEATISYGKSLDNNRL
MTQYGFVLPGNPVAAVLSGFESPPARPPLVASSSGAAGATVANAASGERD
GGVGDLRNELFARAQEFIASAGGGGSGRGADQQQYEQLARRAVPLIPVLA
AQIAALAAELDPAPAAADGGWDDPAAAAAAVYVAALDAAATAAPAATSAE
EDEALLEGDEAAWASSGAPDAWRMDARHAAALRYRLDRKRNTWLAAGMLC
QFVAGRRRAAASDSSAPSAAAEAAPPSAVSG*
back to top

mRNA from alignment at P-wetherbeei_contig1440:5450..7184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1440.4.1 ID=mRNA_P-wetherbeei_contig1440.4.1|Name=mRNA_P-wetherbeei_contig1440.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1735bp|location=Sequence derived from alignment at P-wetherbeei_contig1440:5450..7184- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGAGCCATCTGCCTCTGGGCGCGAGCTAGGGACGGCGCCGTCGGCGG CCTGCAGGGTCAGACGGAGCTCATCTGGGAGGCGGCGGGCGACTTGCGAG TGCCCGTTACCGACGAGCAGGCGGCCGACGGGTTGACATGGGATGTTCGA TTGGCTCTGGCGCTGCACGAGGCGACTGCCGACCCGATGGCGGGCGGGCC GTTCTGGGCCCACTACCGGCGGTTCCTACCGTTGCCGCACACCGTGACGG TGCCGCTCTGCTTCCCGCCGGCGCTGCTCCGCGAACTGCACAACGATGAC ATGGCCGGGCGGGCAGAGCAGCAGCAGCAGCGGCTACGGCGCCTTTTCCC GCTGCTGACCAGCTCGCTTCTCGTCCATCCGGCAACCGCTTTCTATGCCA CTGCCGCGAAAGCCGCCGCCGCCGCTGCCGCCAACGCTGCGACCGCTGTT GCTGCGGACGAGGGCGGATCATCACCCGGCACCGATGCGACCGCGGTGGC ACAGGAGGAGCGTGCAGCGGCTGCGGCAGCCGCGGCAGCTGCAACAGCGG CAAGGGCAGCGGCGATGCCGACGGCGCTCCAATGGGCCTTCGCGCTGGTG CGGAGCCGCGCCTTTGCGGCCGGCGCCGCGTCGGGTTTTGAGGAGTTTGC CTTTGTTCCCTTTTTGGATCAGGTGAGAGGCTCTTGTATCAATTCCTTCG GCGGTTAGAGCTAGTACTTCTCCCGGAGTTCTCAATAATGAAGGCAACCC TGATCTGTCCCAATCTCAAATCATGTGATTTGACCTCTTTCATGGCCCCA AAGAAACATGCTTAGTGTGGCTGCAGCGTTCAACAGACCAACATAATCGA CTACACCTGCACCCGTCTCCGCGTTTCCTCCTCTGCTTTTTGGACCAGGC CAACCATTCTCCGCGCCCGGCCGCCGATTTCGGCTACGACGCCGCGGCCG ACGAATGGCGGCTGACGACGCTGGCCCCGCTGCCGGCGGGCGCCGAGGCC ACCATTTCATACGGGAAAAGCCTCGACAACAACCGCCTCATGACGCAGTA CGGCTTCGTTCTCCCGGGAAATCCCGTGGCCGCGGTGCTGTCGGGATTTG AATCACCGCCAGCACGGCCTCCACTTGTCGCATCGTCATCGGGTGCTGCC GGTGCTACTGTCGCCAATGCAGCTAGCGGAGAGAGAGACGGAGGCGTCGG TGACCTCCGTAACGAACTTTTTGCGAGGGCGCAGGAATTCATCGCCTCGG CAGGCGGCGGCGGCAGCGGCCGCGGTGCCGACCAGCAACAATATGAGCAG CTGGCGCGCCGCGCCGTACCCCTTATCCCCGTTCTGGCGGCGCAGATCGC GGCGCTTGCAGCCGAGCTTGACCCGGCGCCAGCGGCGGCTGACGGCGGGT GGGACGATCCCGCCGCCGCGGCTGCCGCCGTCTATGTTGCCGCGCTGGAT GCCGCGGCAACGGCGGCGCCTGCTGCGACGTCGGCAGAAGAGGACGAGGC GTTACTGGAGGGAGATGAGGCGGCGTGGGCGTCATCGGGCGCTCCGGACG CCTGGCGGATGGATGCGCGTCATGCGGCGGCGCTCCGGTACCGCTTGGAT CGGAAGCGGAACACCTGGCTGGCGGCGGGGATGCTGTGTCAATTCGTCGC AGGTCGTCGCCGGGCTGCTGCGTCCGATTCTTCGGCACCGTCGGCGGCAG CAGAGGCTGCTCCACCTTCCGCCGTATCCGGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1440:5450..7184-

>mRNA_P-wetherbeei_contig1440.4.1 ID=mRNA_P-wetherbeei_contig1440.4.1|Name=mRNA_P-wetherbeei_contig1440.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig1440:5450..7184- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGAGCCATCTGCCTCTGGGCGCGAGCTAGGGACGGCGCCGTCGGCGG
CCTGCAGGGTCAGACGGAGCTCATCTGGGAGGCGGCGGGCGACTTGCGAG
TGCCCGTTACCGACGAGCAGGCGGCCGACGGGTTGACATGGGATGTTCGA
TTGGCTCTGGCGCTGCACGAGGCGACTGCCGACCCGATGGCGGGCGGGCC
GTTCTGGGCCCACTACCGGCGGTTCCTACCGTTGCCGCACACCGTGACGG
TGCCGCTCTGCTTCCCGCCGGCGCTGCTCCGCGAACTGCACAACGATGAC
ATGGCCGGGCGGGCAGAGCAGCAGCAGCAGCGGCTACGGCGCCTTTTCCC
GCTGCTGACCAGCTCGCTTCTCGTCCATCCGGCAACCGCTTTCTATGCCA
CTGCCGCGAAAGCCGCCGCCGCCGCTGCCGCCAACGCTGCGACCGCTCGT
GCAGCGGCTGCGGCAGCCGCGGCAGCTGCAACAGCGGCAAGGGCAGCGGC
GATGCCGACGGCGCTCCAATGGGCCTTCGCGCTGGTGCGGAGCCGCGCCT
TTGCGGCCGGCGCCGCGTCGGGTTTTGAGGAGTTTGCCTTTGTTCCCTTT
TTGGATCAGGCCAACCATTCTCCGCGCCCGGCCGCCGATTTCGGCTACGA
CGCCGCGGCCGACGAATGGCGGCTGACGACGCTGGCCCCGCTGCCGGCGG
GCGCCGAGGCCACCATTTCATACGGGAAAAGCCTCGACAACAACCGCCTC
ATGACGCAGTACGGCTTCGTTCTCCCGGGAAATCCCGTGGCCGCGGTGCT
GTCGGGATTTGAATCACCGCCAGCACGGCCTCCACTTGTCGCATCGTCAT
CGGGTGCTGCCGGTGCTACTGTCGCCAATGCAGCTAGCGGAGAGAGAGAC
GGAGGCGTCGGTGACCTCCGTAACGAACTTTTTGCGAGGGCGCAGGAATT
CATCGCCTCGGCAGGCGGCGGCGGCAGCGGCCGCGGTGCCGACCAGCAAC
AATATGAGCAGCTGGCGCGCCGCGCCGTACCCCTTATCCCCGTTCTGGCG
GCGCAGATCGCGGCGCTTGCAGCCGAGCTTGACCCGGCGCCAGCGGCGGC
TGACGGCGGGTGGGACGATCCCGCCGCCGCGGCTGCCGCCGTCTATGTTG
CCGCGCTGGATGCCGCGGCAACGGCGGCGCCTGCTGCGACGTCGGCAGAA
GAGGACGAGGCGTTACTGGAGGGAGATGAGGCGGCGTGGGCGTCATCGGG
CGCTCCGGACGCCTGGCGGATGGATGCGCGTCATGCGGCGGCGCTCCGGT
ACCGCTTGGATCGGAAGCGGAACACCTGGCTGGCGGCGGGGATGCTGTGT
CAATTCGTCGCAGGTCGTCGCCGGGCTGCTGCGTCCGATTCTTCGGCACC
GTCGGCGGCAGCAGAGGCTGCTCCACCTTCCGCCGTATCCGGGTGA
back to top