mRNA_P-wetherbeei_contig10367.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10367.1.1
Unique NamemRNA_P-wetherbeei_contig10367.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10367.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10367contigP-wetherbeei_contig10367:925..2189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1267
Hectar predicted targeting categoryother localisation
Exons1
Cds size1125
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.7005887-CDS-P-wetherbeei_contig10367:924..20491683185865.7005887-CDS-P-wetherbeei_contig10367:924..2049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10367 925..2049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.7184076-UTR-P-wetherbeei_contig10367:2049..21891683185865.7184076-UTR-P-wetherbeei_contig10367:2049..2189Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10367 2050..2189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10367.1.1prot_P-wetherbeei_contig10367.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10367 925..2049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10367.1.1

>prot_P-wetherbeei_contig10367.1.1 ID=prot_P-wetherbeei_contig10367.1.1|Name=mRNA_P-wetherbeei_contig10367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=375bp
MAGFDNGKRDRSVSPLPCSSSPTSYASPLAKACASLQQEIHRSNVLREMK
DGYDVIRVSEAQPLGARRATPTGGGERGRLDVAAGEFGLLHLRFVSERTS
MSPPRSASPPRTMTRINGSPIRGATAATASSRGASATSSPPQDEPTAISI
PLVDIVAVARRRGRNSVRAVHRFSPSPSAANSRSPERRSPLPAARRGAED
FDPSGVDAVNLSGSGRGFGFGGLGNRSPGLGNSNHSANGNSNTGSSGSGG
RGLGAGGISGATNGGAGASAALGAGGSAASGGGGEAASEELLCIYLSSGQ
SVTLKAARATDDLQAVADGIAVLRRTPAGAAAATMDDNGEADGNAAGGNG
GSFGGISNIGGGGRSSSGTDGSARG
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mRNA from alignment at P-wetherbeei_contig10367:925..2189-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10367.1.1 ID=mRNA_P-wetherbeei_contig10367.1.1|Name=mRNA_P-wetherbeei_contig10367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1265bp|location=Sequence derived from alignment at P-wetherbeei_contig10367:925..2189- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGCATAAATTCGAAATTTGGAAAATTCGCCTTTCCGCCGGAAAGGCG
CTCCCAGCAACGCGCGATGACCGAACAAATTCGGGGTATGCCTTAAGCAG
TTAACTGACTTGTGAATCATAAATCTCTCAAGAGGTAGCAATGGCGGGCT
TTGACAATGGGAAGCGAGACCGGTCTGTCAGCCCCCTTCCATGCTCTTCC
TCGCCAACTTCGTACGCATCACCTCTGGCAAAAGCATGCGCGTCACTGCA
GCAAGAGATTCACCGATCGAACGTACTCCGTGAGATGAAAGATGGTTACG
ATGTGATTCGCGTCAGCGAGGCCCAGCCGCTCGGCGCGCGGCGAGCGACA
CCCACCGGAGGGGGCGAGCGCGGGCGGCTGGATGTTGCCGCTGGAGAATT
CGGGCTGCTCCACCTTCGCTTCGTATCAGAACGAACGTCCATGTCGCCTC
CGCGGTCCGCGTCTCCCCCGCGGACGATGACAAGAATCAACGGCTCACCC
ATCCGCGGCGCCACCGCCGCGACAGCAAGCAGCCGAGGTGCCTCCGCGAC
CTCTTCTCCCCCTCAGGATGAACCCACCGCGATCTCCATTCCACTTGTCG
ACATCGTGGCCGTGGCGCGGCGCCGCGGGAGGAACAGCGTCCGTGCGGTC
CACCGTTTCTCGCCGAGTCCGTCGGCAGCCAACTCTCGCAGCCCGGAGCG
GCGATCGCCGCTGCCCGCGGCGCGGCGCGGAGCCGAAGATTTCGATCCCA
GCGGCGTGGACGCCGTCAACCTCAGCGGCAGCGGCAGGGGGTTCGGCTTT
GGCGGCCTCGGAAACCGCAGCCCCGGCCTCGGAAACAGTAATCACAGCGC
CAACGGCAACAGCAACACTGGCAGCAGCGGGAGCGGCGGTCGTGGGCTTG
GCGCCGGCGGCATCAGCGGCGCCACCAACGGTGGTGCCGGCGCCAGTGCT
GCCCTTGGTGCTGGGGGCAGCGCGGCCAGTGGAGGCGGCGGTGAAGCCGC
AAGTGAAGAGCTTTTATGCATTTATCTCTCTTCGGGCCAATCGGTAACGC
TAAAAGCGGCGCGGGCCACCGACGACTTGCAGGCCGTCGCGGACGGCATT
GCCGTGCTGCGCCGGACGCCTGCCGGTGCCGCTGCGGCCACGATGGACGA
CAACGGCGAGGCAGACGGCAACGCCGCCGGCGGCAACGGCGGTAGCTTTG
GGGGCATTAGCAATATTGGTGGCGGCGGCAGGAGCAGTAGCGGCACTGAT
GGCAGCGCCCGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10367:925..2189-

>mRNA_P-wetherbeei_contig10367.1.1 ID=mRNA_P-wetherbeei_contig10367.1.1|Name=mRNA_P-wetherbeei_contig10367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1125bp|location=Sequence derived from alignment at P-wetherbeei_contig10367:925..2189- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGGCTTTGACAATGGGAAGCGAGACCGGTCTGTCAGCCCCCTTCC
ATGCTCTTCCTCGCCAACTTCGTACGCATCACCTCTGGCAAAAGCATGCG
CGTCACTGCAGCAAGAGATTCACCGATCGAACGTACTCCGTGAGATGAAA
GATGGTTACGATGTGATTCGCGTCAGCGAGGCCCAGCCGCTCGGCGCGCG
GCGAGCGACACCCACCGGAGGGGGCGAGCGCGGGCGGCTGGATGTTGCCG
CTGGAGAATTCGGGCTGCTCCACCTTCGCTTCGTATCAGAACGAACGTCC
ATGTCGCCTCCGCGGTCCGCGTCTCCCCCGCGGACGATGACAAGAATCAA
CGGCTCACCCATCCGCGGCGCCACCGCCGCGACAGCAAGCAGCCGAGGTG
CCTCCGCGACCTCTTCTCCCCCTCAGGATGAACCCACCGCGATCTCCATT
CCACTTGTCGACATCGTGGCCGTGGCGCGGCGCCGCGGGAGGAACAGCGT
CCGTGCGGTCCACCGTTTCTCGCCGAGTCCGTCGGCAGCCAACTCTCGCA
GCCCGGAGCGGCGATCGCCGCTGCCCGCGGCGCGGCGCGGAGCCGAAGAT
TTCGATCCCAGCGGCGTGGACGCCGTCAACCTCAGCGGCAGCGGCAGGGG
GTTCGGCTTTGGCGGCCTCGGAAACCGCAGCCCCGGCCTCGGAAACAGTA
ATCACAGCGCCAACGGCAACAGCAACACTGGCAGCAGCGGGAGCGGCGGT
CGTGGGCTTGGCGCCGGCGGCATCAGCGGCGCCACCAACGGTGGTGCCGG
CGCCAGTGCTGCCCTTGGTGCTGGGGGCAGCGCGGCCAGTGGAGGCGGCG
GTGAAGCCGCAAGTGAAGAGCTTTTATGCATTTATCTCTCTTCGGGCCAA
TCGGTAACGCTAAAAGCGGCGCGGGCCACCGACGACTTGCAGGCCGTCGC
GGACGGCATTGCCGTGCTGCGCCGGACGCCTGCCGGTGCCGCTGCGGCCA
CGATGGACGACAACGGCGAGGCAGACGGCAACGCCGCCGGCGGCAACGGC
GGTAGCTTTGGGGGCATTAGCAATATTGGTGGCGGCGGCAGGAGCAGTAG
CGGCACTGATGGCAGCGCCCGCGGC
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