mRNA_P-wetherbeei_contig144.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig144.4.1
Unique NamemRNA_P-wetherbeei_contig144.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig144.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig144contigP-wetherbeei_contig144:6029..7448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1420
Hectar predicted targeting categoryother localisation
Exons1
Cds size861
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.4686494-UTR-P-wetherbeei_contig144:6028..64291683186020.4686494-UTR-P-wetherbeei_contig144:6028..6429Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig144 6029..6429 -
1683186020.4882374-UTR-P-wetherbeei_contig144:7290..74481683186020.4882374-UTR-P-wetherbeei_contig144:7290..7448Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig144 7291..7448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.4788172-CDS-P-wetherbeei_contig144:6429..72901683186020.4788172-CDS-P-wetherbeei_contig144:6429..7290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig144 6430..7290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig144.4.1prot_P-wetherbeei_contig144.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig144 6430..7290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig144.4.1

>prot_P-wetherbeei_contig144.4.1 ID=prot_P-wetherbeei_contig144.4.1|Name=mRNA_P-wetherbeei_contig144.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=287bp
MECSGRKRELTPPAPDASWEAWSPYAEVKRQTLYRSGLSNAARGGSGRSA
GPRALKEEPAPRRVVVDDDDDVRSARPPSPVDRDGSEGTDAEDEEESEDD
SDDSDTSSSSDDDDDRTGRMDAPARGGIPAIGTGNGVASRAAPALAAATH
AENTAGHAPAINTVPDRRAADDGGPSLALLLENNRRLRAINGTLMQLVNC
QNAQKRRFDSERARLVNLVNSQNLLWRRAVVAAHHLAAFQEDSCHFCSSC
GSGSGSDDAGAAVSSGGDGLVLARALLQCVAAMDQS*
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mRNA from alignment at P-wetherbeei_contig144:6029..7448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig144.4.1 ID=mRNA_P-wetherbeei_contig144.4.1|Name=mRNA_P-wetherbeei_contig144.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-wetherbeei_contig144:6029..7448- (Phaeothamnion wetherbeei SAG_119_79)
CTTTGAGGGGGCCCCAAAACCCGACGACGCGAGGGGGGAAAACGGGTCAC
ATTTCGTGCTCTCTCCTCCTTCTCTATCTCCTCCTCCTCTTCTCCTCCTT
CTTCGCAGCAGAAGGCGCACGCAGGTCGTTTTCCTCAACGAAAAACTTCA
TCCTGCCTATGGAGTGCAGCGGGCGAAAGCGAGAACTCACTCCTCCAGCT
CCGGATGCGTCGTGGGAAGCATGGAGCCCGTATGCCGAGGTCAAAAGACA
AACCCTCTATCGGAGCGGGCTCAGCAACGCGGCACGAGGAGGGTCAGGAC
GGTCTGCTGGTCCACGAGCGTTAAAAGAAGAGCCAGCACCGCGACGCGTC
GTTGTCGATGATGACGACGACGTGAGGAGCGCACGCCCCCCGTCTCCTGT
GGATCGAGATGGTTCCGAAGGAACAGACGCTGAAGATGAGGAGGAGAGCG
AGGACGACAGCGACGACAGCGATACGAGCAGCAGCAGCGACGACGACGAC
GATAGGACAGGTCGGATGGATGCGCCGGCCCGTGGTGGCATTCCTGCCAT
CGGTACTGGCAACGGCGTTGCTTCGCGTGCCGCCCCCGCCCTAGCTGCCG
CCACCCATGCCGAAAACACGGCGGGGCACGCGCCGGCAATCAACACGGTG
CCGGACAGGCGAGCGGCGGACGATGGCGGCCCCAGCCTTGCGCTCCTGCT
CGAGAACAACCGCCGCCTCCGCGCCATCAACGGGACGCTCATGCAGCTCG
TCAACTGCCAGAATGCCCAGAAGCGCCGCTTCGACAGCGAGCGCGCCCGC
CTCGTCAATCTGGTCAACAGCCAAAACCTCTTGTGGCGGCGCGCCGTCGT
CGCGGCCCACCACTTGGCGGCTTTCCAGGAAGACAGTTGCCACTTCTGCA
GCAGCTGCGGCAGCGGCAGCGGCAGCGACGATGCCGGCGCCGCGGTGAGC
AGCGGCGGCGACGGGCTGGTGCTTGCGCGCGCGCTGCTGCAGTGTGTGGC
GGCGATGGACCAATCGTGAACGCAATTGCTCACGATTCGATCTGTGATGT
CCTCTCAGCGGCAGTCCTCTCCGCGACAGAAGCGGCTGCGAGGGGTTTTC
CGAGCGCCGCCGCGGCGGTGGTGGCGGCGGCGGCGACGAGAAGAGAGGAG
TCCATGCGCGAGTGCGTCTGTGCATTGGGGCTTTGTGGTGGATGCATGTT
AACCCTGCCGGCACACATGCTTGCTACGGCACTGAAAATGCAATCGGAAT
CGAATGGAGCTGTAGCGATGAGAGGGCGGGCAGATGCAGTCTGTAGGGCT
GCATGAGCCAGCAACAGTCTAGGCGGCGGAATGGGGACAAAACATTGGAG
GGCGGCAGGCAATCGTTTTTATGGCGCTTATCCCGGTGGATTGGTCGCGA
TAGAAGGACCTTAATAAATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig144:6029..7448-

>mRNA_P-wetherbeei_contig144.4.1 ID=mRNA_P-wetherbeei_contig144.4.1|Name=mRNA_P-wetherbeei_contig144.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig144:6029..7448- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTGCAGCGGGCGAAAGCGAGAACTCACTCCTCCAGCTCCGGATGC
GTCGTGGGAAGCATGGAGCCCGTATGCCGAGGTCAAAAGACAAACCCTCT
ATCGGAGCGGGCTCAGCAACGCGGCACGAGGAGGGTCAGGACGGTCTGCT
GGTCCACGAGCGTTAAAAGAAGAGCCAGCACCGCGACGCGTCGTTGTCGA
TGATGACGACGACGTGAGGAGCGCACGCCCCCCGTCTCCTGTGGATCGAG
ATGGTTCCGAAGGAACAGACGCTGAAGATGAGGAGGAGAGCGAGGACGAC
AGCGACGACAGCGATACGAGCAGCAGCAGCGACGACGACGACGATAGGAC
AGGTCGGATGGATGCGCCGGCCCGTGGTGGCATTCCTGCCATCGGTACTG
GCAACGGCGTTGCTTCGCGTGCCGCCCCCGCCCTAGCTGCCGCCACCCAT
GCCGAAAACACGGCGGGGCACGCGCCGGCAATCAACACGGTGCCGGACAG
GCGAGCGGCGGACGATGGCGGCCCCAGCCTTGCGCTCCTGCTCGAGAACA
ACCGCCGCCTCCGCGCCATCAACGGGACGCTCATGCAGCTCGTCAACTGC
CAGAATGCCCAGAAGCGCCGCTTCGACAGCGAGCGCGCCCGCCTCGTCAA
TCTGGTCAACAGCCAAAACCTCTTGTGGCGGCGCGCCGTCGTCGCGGCCC
ACCACTTGGCGGCTTTCCAGGAAGACAGTTGCCACTTCTGCAGCAGCTGC
GGCAGCGGCAGCGGCAGCGACGATGCCGGCGCCGCGGTGAGCAGCGGCGG
CGACGGGCTGGTGCTTGCGCGCGCGCTGCTGCAGTGTGTGGCGGCGATGG
ACCAATCGTGA
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