mRNA_P-wetherbeei_contig14375.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14375.1.1
Unique NamemRNA_P-wetherbeei_contig14375.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14375.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14375contigP-wetherbeei_contig14375:14..1723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1711
Hectar predicted targeting categoryother localisation
Exons1
Cds size1710
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.749612-CDS-P-wetherbeei_contig14375:13..17231683186019.749612-CDS-P-wetherbeei_contig14375:13..1723Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14375 14..1723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14375.1.1prot_P-wetherbeei_contig14375.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14375 14..1723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14375.1.1

>prot_P-wetherbeei_contig14375.1.1 ID=prot_P-wetherbeei_contig14375.1.1|Name=mRNA_P-wetherbeei_contig14375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=570bp
AAASRRTSNFPVLAVGGDSEDDNLTDEDEEAESKYDRVKELERLEAEVEL
VVLWCLDGLIGRSMRQTPAAAGGPAARFGGDGGGFGGGGGGFGGGGGGGG
VGFGGGLCDAHPDLLEKIAGVAPLFGLVAAVSPSSRNRRQALQALTVFAA
RGHPCVMQAVDEVSVELESPRFWEIVLILADEPRSAAVKLAAMVFLNTVL
HAVGDDLLERMDRRGLMEKADIFGAMETLRFHYDIRPADEVSDDGSAATD
VQSADDGDTGSSAGSIARRGSSYIIGGRRGSKSLSAAVRDKEEKVLQDLS
QQLDLYEELLREDEAGLNPMGEDDDGGGGGGGGGVGFELPGLPGSARSLN
SSGQWQWGAGAPSRRGSIGMGGGTPEEEVFLVRVRELLRAAPAGTLAWST
LADKLAELAGDITGDGGGAGFGGEGESNPDSDSETPGADVIDVTSRGANA
LEDSDSDDEAKKPAATVVKALAAGGSSIPLPPPMTGAPRGIPAPPPMPGM
GATIPPPPPLPGTMGATIPPPPPLPGATGATIPPSPLPGAMARSIPPPPP
MPGAMARGIPPPPPLPGAIA
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mRNA from alignment at P-wetherbeei_contig14375:14..1723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14375.1.1 ID=mRNA_P-wetherbeei_contig14375.1.1|Name=mRNA_P-wetherbeei_contig14375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1710bp|location=Sequence derived from alignment at P-wetherbeei_contig14375:14..1723+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGAGCCGGCGGACCAGCAACTTTCCAGTGCTGGCGGTCGGGGG
CGACAGCGAGGATGACAACCTGACGGATGAGGACGAGGAGGCGGAGAGCA
AGTATGACCGCGTCAAGGAGCTGGAGCGACTCGAGGCCGAAGTGGAGCTG
GTTGTGCTGTGGTGCCTCGACGGTCTGATAGGCCGCTCCATGCGGCAGAC
ACCGGCGGCTGCTGGGGGGCCGGCAGCACGGTTCGGCGGCGACGGCGGCG
GCTTCGGTGGCGGCGGCGGTGGCTTCGGCGGCGGCGGTGGCGGCGGAGGC
GTTGGTTTCGGCGGCGGCCTCTGCGATGCCCACCCGGACCTGCTGGAGAA
GATCGCGGGCGTAGCGCCGTTGTTCGGCCTGGTGGCTGCTGTTTCGCCGT
CGTCGCGCAACCGGCGGCAGGCGCTCCAGGCGCTGACCGTCTTCGCGGCG
CGCGGCCACCCGTGCGTAATGCAGGCCGTGGACGAGGTCAGCGTTGAGCT
GGAGTCGCCTCGGTTCTGGGAGATCGTTCTAATCCTCGCGGACGAGCCGC
GATCGGCGGCCGTCAAGCTGGCGGCCATGGTTTTTTTGAACACGGTGCTG
CACGCCGTGGGGGACGACCTGCTGGAACGCATGGACAGGCGCGGGCTGAT
GGAGAAAGCCGACATCTTCGGCGCGATGGAGACGCTGCGCTTCCATTACG
ACATTCGGCCGGCGGACGAGGTGTCAGATGACGGCAGCGCTGCGACGGAC
GTCCAATCGGCGGACGACGGCGACACGGGCAGCAGCGCCGGCAGCATCGC
GCGGCGCGGCAGCAGCTACATCATCGGCGGCCGGCGCGGCTCCAAGTCGC
TGTCGGCGGCCGTCCGTGACAAGGAGGAAAAGGTCCTGCAGGACCTGTCG
CAGCAACTCGACCTCTACGAGGAGCTGCTGCGGGAGGACGAAGCCGGGCT
GAACCCGATGGGCGAAGACGACGACGGCGGCGGCGGCGGCGGCGGCGGTG
GCGTCGGGTTTGAGCTCCCAGGGCTGCCGGGCAGCGCACGCAGCCTTAAT
AGCAGCGGCCAGTGGCAGTGGGGGGCCGGTGCGCCGTCGCGGCGCGGCAG
CATCGGCATGGGCGGGGGCACGCCGGAGGAGGAGGTGTTCCTGGTGCGCG
TGAGGGAGCTGCTGCGGGCGGCGCCGGCCGGCACCCTCGCGTGGTCGACG
CTGGCAGACAAGCTGGCGGAATTGGCGGGCGACATCACGGGCGACGGCGG
CGGCGCTGGCTTCGGCGGGGAGGGCGAGAGTAATCCGGATTCGGACTCGG
AGACGCCCGGCGCCGACGTAATCGATGTTACGAGCCGGGGCGCCAATGCT
CTCGAAGACAGCGACAGCGACGACGAGGCAAAGAAGCCGGCGGCGACGGT
CGTTAAGGCACTTGCCGCCGGCGGCAGCAGCATCCCGCTGCCACCGCCGA
TGACTGGTGCGCCGCGCGGCATCCCGGCGCCGCCGCCCATGCCTGGCATG
GGTGCAACGATTCCTCCGCCGCCGCCATTGCCTGGTACGATGGGTGCGAC
GATTCCTCCGCCGCCGCCATTGCCCGGCGCGACGGGTGCGACGATTCCGC
CGTCGCCTTTACCTGGCGCGATGGCGCGTAGTATTCCCCCCCCGCCGCCT
ATGCCCGGCGCGATGGCCCGTGGCATTCCTCCGCCGCCGCCGCTGCCCGG
TGCAATCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14375:14..1723+

>mRNA_P-wetherbeei_contig14375.1.1 ID=mRNA_P-wetherbeei_contig14375.1.1|Name=mRNA_P-wetherbeei_contig14375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1710bp|location=Sequence derived from alignment at P-wetherbeei_contig14375:14..1723+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGAGCCGGCGGACCAGCAACTTTCCAGTGCTGGCGGTCGGGGG
CGACAGCGAGGATGACAACCTGACGGATGAGGACGAGGAGGCGGAGAGCA
AGTATGACCGCGTCAAGGAGCTGGAGCGACTCGAGGCCGAAGTGGAGCTG
GTTGTGCTGTGGTGCCTCGACGGTCTGATAGGCCGCTCCATGCGGCAGAC
ACCGGCGGCTGCTGGGGGGCCGGCAGCACGGTTCGGCGGCGACGGCGGCG
GCTTCGGTGGCGGCGGCGGTGGCTTCGGCGGCGGCGGTGGCGGCGGAGGC
GTTGGTTTCGGCGGCGGCCTCTGCGATGCCCACCCGGACCTGCTGGAGAA
GATCGCGGGCGTAGCGCCGTTGTTCGGCCTGGTGGCTGCTGTTTCGCCGT
CGTCGCGCAACCGGCGGCAGGCGCTCCAGGCGCTGACCGTCTTCGCGGCG
CGCGGCCACCCGTGCGTAATGCAGGCCGTGGACGAGGTCAGCGTTGAGCT
GGAGTCGCCTCGGTTCTGGGAGATCGTTCTAATCCTCGCGGACGAGCCGC
GATCGGCGGCCGTCAAGCTGGCGGCCATGGTTTTTTTGAACACGGTGCTG
CACGCCGTGGGGGACGACCTGCTGGAACGCATGGACAGGCGCGGGCTGAT
GGAGAAAGCCGACATCTTCGGCGCGATGGAGACGCTGCGCTTCCATTACG
ACATTCGGCCGGCGGACGAGGTGTCAGATGACGGCAGCGCTGCGACGGAC
GTCCAATCGGCGGACGACGGCGACACGGGCAGCAGCGCCGGCAGCATCGC
GCGGCGCGGCAGCAGCTACATCATCGGCGGCCGGCGCGGCTCCAAGTCGC
TGTCGGCGGCCGTCCGTGACAAGGAGGAAAAGGTCCTGCAGGACCTGTCG
CAGCAACTCGACCTCTACGAGGAGCTGCTGCGGGAGGACGAAGCCGGGCT
GAACCCGATGGGCGAAGACGACGACGGCGGCGGCGGCGGCGGCGGCGGTG
GCGTCGGGTTTGAGCTCCCAGGGCTGCCGGGCAGCGCACGCAGCCTTAAT
AGCAGCGGCCAGTGGCAGTGGGGGGCCGGTGCGCCGTCGCGGCGCGGCAG
CATCGGCATGGGCGGGGGCACGCCGGAGGAGGAGGTGTTCCTGGTGCGCG
TGAGGGAGCTGCTGCGGGCGGCGCCGGCCGGCACCCTCGCGTGGTCGACG
CTGGCAGACAAGCTGGCGGAATTGGCGGGCGACATCACGGGCGACGGCGG
CGGCGCTGGCTTCGGCGGGGAGGGCGAGAGTAATCCGGATTCGGACTCGG
AGACGCCCGGCGCCGACGTAATCGATGTTACGAGCCGGGGCGCCAATGCT
CTCGAAGACAGCGACAGCGACGACGAGGCAAAGAAGCCGGCGGCGACGGT
CGTTAAGGCACTTGCCGCCGGCGGCAGCAGCATCCCGCTGCCACCGCCGA
TGACTGGTGCGCCGCGCGGCATCCCGGCGCCGCCGCCCATGCCTGGCATG
GGTGCAACGATTCCTCCGCCGCCGCCATTGCCTGGTACGATGGGTGCGAC
GATTCCTCCGCCGCCGCCATTGCCCGGCGCGACGGGTGCGACGATTCCGC
CGTCGCCTTTACCTGGCGCGATGGCGCGTAGTATTCCCCCCCCGCCGCCT
ATGCCCGGCGCGATGGCCCGTGGCATTCCTCCGCCGCCGCCGCTGCCCGG
TGCAATCGCC
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