mRNA_P-wetherbeei_contig14368.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14368.2.1
Unique NamemRNA_P-wetherbeei_contig14368.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A7S2WN45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN45_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.470e-14
Identity = 65/204 (31.86%), Postives = 90/204 (44.12%), Query Frame = 1
Query:    1 VHQLMAPRFELRSDRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPI-----PLPSAAVVSTSAQEGGSDXXXXXXXXXXXXXXXXXXXXXXXVSKDRGDESVPGDESAGXXXXXXXXXXXXXXXRADMESDAPSPRSRGN-GGRTTRGLATTSSRQPEKGQPAATSGRCSGSGSSGK--ARVARAADCPCKSGRRYKECC 588
            +HQL APR EL + +P  A + +HLSYHGE HYNSVRA DD    PA+ I     P+P+AA   T      ++                         ++     V GD  A                  D ++ + +P + G  GG      A ++   PE G      G+ S SG SG+   + ARA  CPC SG++YK+CC
Sbjct:   68 IHQLDAPRLELYASQPEFATATLHLSYHGEFHYNSVRAADDFGPGPAQAIAMDRPPMPAAATGGTDRGSSSAENLSAVEKQVRISVPWVDLEVIRGTLRE-----VNGDADAAVELLVSGFIPPDPAAEGDHDAVSQNPGAIGVVGGEVAASSAGSADSSPEAGDQGG--GKLSASGKSGQKSGKTARADLCPCGSGKKYKKCC 264          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A7S2WLR9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLR9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.440e-14
Identity = 65/204 (31.86%), Postives = 90/204 (44.12%), Query Frame = 1
Query:    1 VHQLMAPRFELRSDRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPI-----PLPSAAVVSTSAQEGGSDXXXXXXXXXXXXXXXXXXXXXXXVSKDRGDESVPGDESAGXXXXXXXXXXXXXXXRADMESDAPSPRSRGN-GGRTTRGLATTSSRQPEKGQPAATSGRCSGSGSSGK--ARVARAADCPCKSGRRYKECC 588
            +HQL APR EL + +P  A + +HLSYHGE HYNSVRA DD    PA+ I     P+P+AA   T      ++                         ++     V GD  A                  D ++ + +P + G  GG      A ++   PE G      G+ S SG SG+   + ARA  CPC SG++YK+CC
Sbjct:  167 IHQLDAPRLELYASQPEFATATLHLSYHGEFHYNSVRAADDFGPGPAQAIAMDRPPMPAAATGGTDRGSSSAENLSAVEKQVRISVPWVDLEVIRGTLRE-----VNGDADAAVELLVSGFIPPDPAAEGDHDAVSQNPGAIGVVGGEVAASSAGSADSSPEAGDQGG--GKLSASGKSGQKSGKTARADLCPCGSGKKYKKCC 363          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: D7FGR1_ECTSI (OTU domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.780e-8
Identity = 63/217 (29.03%), Postives = 84/217 (38.71%), Query Frame = 1
Query:    1 VHQLMAPRFELRSDRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQEGGSDXXXXXXXXXXXXXXXXXXXXXXX-------VSKDRGDESV---------PG-----DESAGXXXXXXXXXXXXXXXRADMESDAPSPRSRGNGGRTTRGLATTSSRQPEKGQPAATSGRCSGSGSSGKARVARAADCPCKSGRRYKECC 588
            VHQ  APRF +  ++   A   +HLSYHGE+HYNSVRA+ D +  PA PI L       T   +GGS                                +  RGD+++         PG     D +AG                   E+  P    +G GG    G+A  S +  +K                    VARA+DCPC SG +YK+CC
Sbjct:  143 VHQFKAPRFFIPCEK---ARRTIHLSYHGEHHYNSVRAIGDEANGPALPITL------QTPTSKGGSHKRESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIAARNEPGLEEGVDNTAGDKKGTGKLEDGGDSGEKPQENGRPGE-GKGRGG----GVAKKSEKAAKK--------------------VARASDCPCGSGLKYKKCC 325          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A8J2WFC2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WFC2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.680e-7
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 VHQLMAPRFELRSDRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIP 153
            VHQL AP+FE+ +D  + A   VHLSYHGE HYNSVR  DD+SA P+  +P
Sbjct:  144 VHQLEAPKFEICADDNS-ATRTVHLSYHGEAHYNSVRLKDDYSAEPSSGLP 193          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: UPI001C4F07EB (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X1 n=3 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F07EB)

HSP 1 Score: 57.0 bits (136), Expect = 3.340e-6
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 VHQLMAPRFELRSDRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQEG 195
            +H++M+PR+ +R+      A  +HLSYH E HYNSVR  DD    P++PI + + A +ST++Q+G
Sbjct:  125 IHRMMSPRWYIRNFDDH-GARMIHLSYHNEEHYNSVRLKDDPCNGPSKPITIKADANLSTTSQQG 188          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A059AYY5_EUCGR (OTU domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059AYY5_EUCGR)

HSP 1 Score: 55.5 bits (132), Expect = 1.030e-5
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 VHQLMAPRFELRS-DRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQE 192
            +H+ M+PR+ +R+ DRP   A  +HLSYH E HYNSVR  +D    PARPI + + + +S+S+++
Sbjct:  190 IHRNMSPRWYIRNFDRP--GAHMIHLSYHDEEHYNSVRLKEDTGDGPARPITIKADSNLSSSSRQ 252          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A218W1U3_PUNGR (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X1 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A218W1U3_PUNGR)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-5
Identity = 27/68 (39.71%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 VHQLMAPRFELRS-DRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQEGGS 201
            +H+ M+PR+ +R+ ++P   +  +HLSYH E HYNSVR  +DH   PARP+ + + + +S+S+++  S
Sbjct:  158 IHRSMSPRWYIRNFEKP--GSRMIHLSYHDEEHYNSVRLREDHGDGPARPVLIKADSDLSSSSRQAKS 223          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A4Y7J3A2_PAPSO (OTU domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J3A2_PAPSO)

HSP 1 Score: 54.7 bits (130), Expect = 2.020e-5
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 VHQLMAPRFELRS--DRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQEG 195
            +H+LM+PR+ +R+  D  T     +HLSYH E HYNSVR+ +D  + PARP+ + + A +S  + +G
Sbjct:  128 IHKLMSPRWYIRNFEDHGT---RVIHLSYHSEEHYNSVRSKEDPGSGPARPVVIKADADLSAMSNKG 191          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: UPI00192F004D (LOW QUALITY PROTEIN: OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192F004D)

HSP 1 Score: 53.9 bits (128), Expect = 2.390e-5
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 VHQLMAPRFELRS-DRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQE 192
            +H+ M+PR+ +R+ D+P   A  +HLSYH E HYNSVR  +D    PARPI + + + +S+S+++
Sbjct:  131 IHRNMSPRWYIRNFDQP--GARMIHLSYHDEEHYNSVRLKEDTGDGPARPITIKADSNLSSSSRQ 193          
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Match: A0A059AYX9_EUCGR (OTU domain-containing protein (Fragment) n=4 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059AYX9_EUCGR)

HSP 1 Score: 53.9 bits (128), Expect = 2.670e-5
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 VHQLMAPRFELRS-DRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPSAAVVSTSAQE 192
            +H+ M+PR+ +R+ D+P   A  +HLSYH E HYNSVR  +D    PARPI + + + +S+S+++
Sbjct:   48 IHRNMSPRWYIRNFDQP--GARMIHLSYHDEEHYNSVRLKEDTGDGPARPITIKADSNLSSSSRQ 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14368.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7S2WN45_9STRA3.470e-1431.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WLR9_9STRA6.440e-1431.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FGR1_ECTSI1.780e-829.03OTU domain-containing protein, putative n=1 Tax=Ec... [more]
A0A8J2WFC2_9STRA3.680e-758.82Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
UPI001C4F07EB3.340e-643.08OVARIAN TUMOR DOMAIN-containing deubiquitinating e... [more]
A0A059AYY5_EUCGR1.030e-544.62OTU domain-containing protein n=2 Tax=Eucalyptus g... [more]
A0A218W1U3_PUNGR1.160e-539.71OVARIAN TUMOR DOMAIN-containing deubiquitinating e... [more]
A0A4Y7J3A2_PAPSO2.020e-541.79OTU domain-containing protein n=2 Tax=Papaver somn... [more]
UPI00192F004D2.390e-543.08LOW QUALITY PROTEIN: OVARIAN TUMOR DOMAIN-containi... [more]
A0A059AYX9_EUCGR2.670e-543.08OTU domain-containing protein (Fragment) n=4 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14368contigP-wetherbeei_contig14368:886..1668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FGR1
Preferred nameotud3
PFAMsOTU,SEC-C
Model size588
Max annot lvl2759|Eukaryota
KEGG koko:K13717
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.57e-07
EggNOG OGsKOG2605@1|root,KOG2605@2759|Eukaryota
EC3.4.19.12
Descriptionthiol-dependent ubiquitin-specific protease activity
Cds size576
COG categoryG
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.6191382-CDS-P-wetherbeei_contig14368:885..12891683186019.6191382-CDS-P-wetherbeei_contig14368:885..1289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14368 886..1289 -
1683186019.6283782-CDS-P-wetherbeei_contig14368:1484..16561683186019.6283782-CDS-P-wetherbeei_contig14368:1484..1656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14368 1485..1656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.6365361-UTR-P-wetherbeei_contig14368:1656..16681683186019.6365361-UTR-P-wetherbeei_contig14368:1656..1668Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14368 1657..1668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14368.2.1prot_P-wetherbeei_contig14368.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14368 886..1656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14368.2.1

>prot_P-wetherbeei_contig14368.2.1 ID=prot_P-wetherbeei_contig14368.2.1|Name=mRNA_P-wetherbeei_contig14368.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
MAPRFELRSDRPTVAASAVHLSYHGENHYNSVRALDDHSAAPARPIPLPS
AAVVSTSAQEGGSDGNGFGGGDGGGDGGGGGGGSGKGVSKDRGDESVPGD
ESAGAEAANGDDAADSDGARADMESDAPSPRSRGNGGRTTRGLATTSSRQ
PEKGQPAATSGRCSGSGSSGKARVARAADCPCKSGRRYKECC
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mRNA from alignment at P-wetherbeei_contig14368:886..1668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14368.2.1 ID=mRNA_P-wetherbeei_contig14368.2.1|Name=mRNA_P-wetherbeei_contig14368.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig14368:886..1668- (Phaeothamnion wetherbeei SAG_119_79)
GTGCACCAGCTGATGGCGCCACGCTTTGAGTTGCGCAGCGACCGTCCCAC CGTCGCGGCGTCGGCCGTTCACCTCTCCTACCACGGCGAGAATCATTACA ACAGCGTCCGTGCCCTGGACGACCATTCCGCCGCGCCTGCGCGGCCGATT CCACTGCCGTCAGCTGCCGTCGTCTCCACTTCCGGTCTCGCCAGTACCGG CGCCGCTGCAGATGCCTCTCCTGGGAGTCCGGCTGCTACCGCCGTTGCTG ACGCCGGGAAGCAGGATGGGAGGAAAGCGGCAGAAAAGCGGCGCGGCAGA AGAGGTGAAGCGCCGGCGCCGGCGCGCTTTTTAGCGGGCGCGGGCGAGAG CTGCAACGAGGTGGCCGGAGAAGAAAAAGCGCAGGAGGGCGGGAGCGATG GGAATGGTTTCGGCGGCGGGGATGGCGGCGGCGATGGCGGTGGCGGCGGC GGCGGCAGCGGAAAAGGCGTTAGCAAGGATCGAGGGGACGAAAGCGTCCC TGGCGATGAAAGCGCCGGCGCCGAAGCGGCGAACGGCGATGACGCAGCCG ACAGCGACGGCGCCCGTGCCGACATGGAATCCGACGCCCCATCGCCACGG TCGCGAGGCAATGGCGGCAGGACAACCCGCGGGTTGGCAACTACTAGTAG TAGGCAGCCGGAAAAAGGACAACCTGCGGCAACATCGGGCAGGTGTAGCG GCAGCGGCAGCAGTGGTAAGGCGAGGGTGGCGCGCGCCGCCGACTGTCCG TGCAAGAGCGGGCGGCGGTACAAGGAGTGCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14368:886..1668-

>mRNA_P-wetherbeei_contig14368.2.1 ID=mRNA_P-wetherbeei_contig14368.2.1|Name=mRNA_P-wetherbeei_contig14368.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig14368:886..1668- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCACGCTTTGAGTTGCGCAGCGACCGTCCCACCGTCGCGGCGTC
GGCCGTTCACCTCTCCTACCACGGCGAGAATCATTACAACAGCGTCCGTG
CCCTGGACGACCATTCCGCCGCGCCTGCGCGGCCGATTCCACTGCCGTCA
GCTGCCGTCGTCTCCACTTCCGCGCAGGAGGGCGGGAGCGATGGGAATGG
TTTCGGCGGCGGGGATGGCGGCGGCGATGGCGGTGGCGGCGGCGGCGGCA
GCGGAAAAGGCGTTAGCAAGGATCGAGGGGACGAAAGCGTCCCTGGCGAT
GAAAGCGCCGGCGCCGAAGCGGCGAACGGCGATGACGCAGCCGACAGCGA
CGGCGCCCGTGCCGACATGGAATCCGACGCCCCATCGCCACGGTCGCGAG
GCAATGGCGGCAGGACAACCCGCGGGTTGGCAACTACTAGTAGTAGGCAG
CCGGAAAAAGGACAACCTGCGGCAACATCGGGCAGGTGTAGCGGCAGCGG
CAGCAGTGGTAAGGCGAGGGTGGCGCGCGCCGCCGACTGTCCGTGCAAGA
GCGGGCGGCGGTACAAGGAGTGCTGC
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