mRNA_P-wetherbeei_contig1436.4.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1436.4.2
Unique NamemRNA_P-wetherbeei_contig1436.4.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1436.4.2 vs. uniprot
Match: A0A836CBF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.180e-13
Identity = 97/306 (31.70%), Postives = 129/306 (42.16%), Query Frame = 1 
Query:    7 ATQDALEAMRRAGVVAAVNTPPPPERDEPRETQVKLCL--RLKAPQLP------AAADSAGGTGGGRQLPGKQTRRSGHGSGSXXXXXXXXRHGGVAAAKGSNAFHVDLSRFRSVLVIRAE-RIGPAGGVALARDLSRGCCPALRHLLLPYNGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------KIFAHQVL---GGVWCGVAEVGLAGCGIRDAGLLAVFSAVTATGVDIPRLQR-LSLRANSASLAARQRMAPTPRFW 852
            ATQ+ L  MRRAGV A VN PP P  D P E    + +  R ++P+ P      A AD+       ++L  +Q  R+      XXXXXX  R   +A  +  + F++ LSR R++  +R    +GP GGV LAR+LS   C  L  L LP   L+                XXXXXX                                                     +  AHQ+L   G  W GVA +GLA CG+ DAG LA++ A+   GV +    R + LR N  S AAR+ M  T   W
Sbjct:  354 ATQEVLALMRRAGVTAGVNAPPAPPADVPHEADESVVIWPRAQSPRSPXXXPQAAVADAQDA----KELD-RQASRASTAXXXXXXXXXQRRRVWLAQQEAGSYFNLQLSRMRAITRLRVRGALGPRGGVPLARELSAASCLTLLELRLPRCALTDAGLAPVLAALAHGSGXXXXXXGSAAPLLATLDLRENGLTAAAVQLFGAARDGNGLRALRDLDLGGNAALGDGGARTLAHQLLASRGATWRGVARLGLAHCGVGDAGALALWRALDGAGVLLESPPRCVCLRDNRVSAAARRAMGATAPLW 654
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BLAST of mRNA_P-wetherbeei_contig1436.4.2 vs. uniprot
Match: A0A7S3Y1R3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1R3_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 2.460e-11
Identity = 54/144 (37.50%), Postives = 68/144 (47.22%), Query Frame = 1 
Query:   10 TQDALEAMRRAGVVAAVNTPPPPERDEPRETQVKLCLRLKAPQLPAAADSAGGTGGGRQLPGKQTRRSGHGSGSXXXXXXXXRHGGVAAAKGSNAFHVDLSRFRSVLVIRAERIGPAGGVALARDLSRGCCPALRHLLLPYNGL 441
            T+ AL  MRRAG +A  N  PPPE ++ RET   L LR+     P   D+  G         ++ R+ G                      GS  F VDL R+R V  I A+++G AGG ALA DL  G CP L HL L +N L
Sbjct:   36 TRAALAQMRRAGTIAGANARPPPEVEDDRETAKLLHLRMN----PHPPDAGAGP--------RRRRKKG---------------------VGSKLFTVDLKRYRMVETIHAQKLGEAGGRALAGDLLLGFCPGLGHLRLGWNDL 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1436.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CBF8_9STRA7.180e-1331.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y1R3_HETAK2.460e-1137.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1436contigP-wetherbeei_contig1436:4644..6107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T002325
PFAMsLRR_6
Model size1135
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.49e-06
EggNOG OGs2CKB5@1|root,2RYCE@2759|Eukaryota,1MEE2@121069|Pythiales
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-11_004140.1
DescriptionSource PGD
Cds size831
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.233514-UTR-P-wetherbeei_contig1436:4643..46731683186019.233514-UTR-P-wetherbeei_contig1436:4643..4673Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1436 4644..4673 +
1683186019.282002-UTR-P-wetherbeei_contig1436:5833..61071683186019.282002-UTR-P-wetherbeei_contig1436:5833..6107Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1436 5834..6107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.2449067-CDS-P-wetherbeei_contig1436:4673..48121683186019.2449067-CDS-P-wetherbeei_contig1436:4673..4812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1436 4674..4812 +
1683186019.255059-CDS-P-wetherbeei_contig1436:4920..54051683186019.255059-CDS-P-wetherbeei_contig1436:4920..5405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1436 4921..5405 +
1683186019.2714584-CDS-P-wetherbeei_contig1436:5626..58331683186019.2714584-CDS-P-wetherbeei_contig1436:5626..5833Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1436 5627..5833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1436.4.2prot_P-wetherbeei_contig1436.4.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1436 4674..5833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1436.4.2

>prot_P-wetherbeei_contig1436.4.2 ID=prot_P-wetherbeei_contig1436.4.2|Name=mRNA_P-wetherbeei_contig1436.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp
MRRAGVVAAVNTPPPPERDEPRETQVKLCLRLKAPQLPAAADSAGGTGGG
RQLPGKQTRRSGHGSGSHGGGTHGGRHGGVAAAKGSNAFHVDLSRFRSVL
VIRAERIGPAGGVALARDLSRGCCPALRHLLLPYNGLSPRGAAALLEAFA
GGAGAAIEALDLSANGLGPAAVAALGRAIAAGGLPRLSAVELGGNKIGDE
GAKIFAHQVLGGVWCGVAEVGLAGCGIRDAGLLAVFSAVTATGVDIPRLQ
RLSLRANSASLAARQRMAPTPRFWAA*
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mRNA from alignment at P-wetherbeei_contig1436:4644..6107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1436.4.2 ID=mRNA_P-wetherbeei_contig1436.4.2|Name=mRNA_P-wetherbeei_contig1436.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1464bp|location=Sequence derived from alignment at P-wetherbeei_contig1436:4644..6107+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCGGGCGACGCAGGATGCGCTGGAAGCGATGCGTCGGGCCGGCGTCGT
CGCCGCCGTCAACACGCCGCCGCCGCCGGAGCGCGACGAGCCGCGCGAGA
CACAAGTCAAGCTCTGCCTGCGGCTGAAGGCGCCGCAGTTGCCGGCTGCT
GCGGACTCCGCCGGCGGCAGTGGCCACAACGGGCGCGGACCGCTGCAAGA
TCTGTCGGCAGTACCGGCGGGGCCCACCCAGCTGTCGGCGGCGCCGCCGG
TCGCCGCATGGGGTGCCGCCCGTGCAGCTGGCGGCGGCCGTCAATTGCCG
GGCAAGCAGACCCGCCGCAGTGGCCATGGGAGCGGCAGCCATGGCGGCGG
CACTCACGGCGGCAGGCATGGCGGCGTGGCGGCGGCCAAGGGTTCCAACG
CCTTCCACGTGGACCTCTCCCGCTTCCGCAGCGTCTTGGTCATCCGTGCG
GAGCGCATCGGCCCGGCCGGCGGCGTCGCCCTCGCCCGCGACCTTTCCCG
CGGCTGCTGCCCGGCCCTCCGCCACCTCCTCCTCCCTTACAACGGTCTGA
GCCCCCGAGGCGCCGCGGCGCTGCTCGAAGCCTTTGCGGGAGGAGCAGGG
GCCGCTATCGAGGCATTGGACCTGAGCGCGAACGGGCTGGGCCCGGCGGC
AGTGGCAGCGCTGGGGCGGGCGATTGCGGCTGGCGGGCTGCCGCGGCTGT
CGGCGGTCGAACTCGGTGGCAACAAGATCGGCGACGAGGGCGCAAAGATC
TTTGCGCACCAGGTGAGAGAGTAGGGAAGAGGGTTGGTAGGTGCGAACAG
GATTTGAGTTTTTGGTTGTCTCTTTGTTTATCGTAAAGTCTTTTTTGTGT
CCCCGCTATCGTCTTGTAGGGCTCTTAGGACGAAGGCTCGCTCCGGCCGT
GTCTTTATACGTTCTAGAGGTGCTTTCCTTCTCTCTGTGTCTTATCGCTA
CTTCCAATTCTTCCTCCCTTGCGACAACCGCAGGTGTTGGGCGGCGTGTG
GTGCGGTGTGGCGGAGGTGGGCCTGGCGGGCTGCGGCATCCGCGACGCCG
GTCTCCTCGCCGTCTTCTCGGCAGTGACGGCGACGGGCGTCGACATTCCA
CGGCTGCAGCGCCTCTCGCTGCGCGCCAATTCCGCCAGCCTCGCCGCCCG
GCAGCGCATGGCGCCGACTCCGCGCTTCTGGGCCGCCTGACGGCCGGTGT
GAACCGGGCTGAAGAGAGACGGGTTTTCGGGTCCGCCCCGCCGGGGCAGA
TGCTAATTTCGGTTCCGGCCGGCACCGGCACCTTGTGGAAACGCCTTCCC
GATGCTCCACAAAAATTTAATTAGCGGCATCTGACGCTCCCTTTCTTAGT
GAAAACGATGATCGAACATCTGCTTAGGTGTTGGTGTTTCAAGAATTAGA
AATGAACTGGCTCAAGAGGAATTCGTCTGCGGAAAGCAGTATGCGCCATA
ATCCATACACCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1436:4644..6107+

>mRNA_P-wetherbeei_contig1436.4.2 ID=mRNA_P-wetherbeei_contig1436.4.2|Name=mRNA_P-wetherbeei_contig1436.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig1436:4644..6107+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCGGGCCGGCGTCGTCGCCGCCGTCAACACGCCGCCGCCGCCGGA
GCGCGACGAGCCGCGCGAGACACAAGTCAAGCTCTGCCTGCGGCTGAAGG
CGCCGCAGTTGCCGGCTGCTGCGGACTCCGCCGGCGGCACTGGCGGCGGC
CGTCAATTGCCGGGCAAGCAGACCCGCCGCAGTGGCCATGGGAGCGGCAG
CCATGGCGGCGGCACTCACGGCGGCAGGCATGGCGGCGTGGCGGCGGCCA
AGGGTTCCAACGCCTTCCACGTGGACCTCTCCCGCTTCCGCAGCGTCTTG
GTCATCCGTGCGGAGCGCATCGGCCCGGCCGGCGGCGTCGCCCTCGCCCG
CGACCTTTCCCGCGGCTGCTGCCCGGCCCTCCGCCACCTCCTCCTCCCTT
ACAACGGTCTGAGCCCCCGAGGCGCCGCGGCGCTGCTCGAAGCCTTTGCG
GGAGGAGCAGGGGCCGCTATCGAGGCATTGGACCTGAGCGCGAACGGGCT
GGGCCCGGCGGCAGTGGCAGCGCTGGGGCGGGCGATTGCGGCTGGCGGGC
TGCCGCGGCTGTCGGCGGTCGAACTCGGTGGCAACAAGATCGGCGACGAG
GGCGCAAAGATCTTTGCGCACCAGGTGTTGGGCGGCGTGTGGTGCGGTGT
GGCGGAGGTGGGCCTGGCGGGCTGCGGCATCCGCGACGCCGGTCTCCTCG
CCGTCTTCTCGGCAGTGACGGCGACGGGCGTCGACATTCCACGGCTGCAG
CGCCTCTCGCTGCGCGCCAATTCCGCCAGCCTCGCCGCCCGGCAGCGCAT
GGCGCCGACTCCGCGCTTCTGGGCCGCCTGA
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