mRNA_P-wetherbeei_contig1436.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1436.3.1
Unique NamemRNA_P-wetherbeei_contig1436.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1436.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1436contigP-wetherbeei_contig1436:3696..4501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHG7
PFAMsLRR_6
Model size440
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.33e-08
EggNOG OGs2CKB5@1|root,2RYCE@2759|Eukaryota
DescriptionLeucine Rich repeat
Cds size438
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.1950042-CDS-P-wetherbeei_contig1436:3695..38871683186019.1950042-CDS-P-wetherbeei_contig1436:3695..3887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1436 3696..3887 +
1683186019.2050526-CDS-P-wetherbeei_contig1436:4253..44991683186019.2050526-CDS-P-wetherbeei_contig1436:4253..4499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1436 4254..4499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1436.3.1prot_P-wetherbeei_contig1436.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1436 3696..4499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1436.3.1

>prot_P-wetherbeei_contig1436.3.1 ID=prot_P-wetherbeei_contig1436.3.1|Name=mRNA_P-wetherbeei_contig1436.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
SAGKLPTSRKAQRTARKAQKIGLMTARLGGVLVEAVVVNPIASKWKAFHD
MCTAQREARRYPTLDWLEARCVAQRKEAEEKKLREQDERRVKWRIRLKSE
RIRQEAYDLSEAVQRDAAAERAAVLTRLQEGAHARSRWLQANIAWQ
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mRNA from alignment at P-wetherbeei_contig1436:3696..4501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1436.3.1 ID=mRNA_P-wetherbeei_contig1436.3.1|Name=mRNA_P-wetherbeei_contig1436.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=806bp|location=Sequence derived from alignment at P-wetherbeei_contig1436:3696..4501+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGGGAAGCTACCAACCAGCCGCAAAGCCCAGCGCACCGCCCGCAA
GGCGCAGAAGATCGGGCTGATGACGGCCCGCCTCGGCGGCGTGTTGGTGG
AGGCCGTCGTGGTGAATCCGATCGCAAGCAAGTGGAAGGCGTTCCACGAC
ATGTGCACGGCCCAGCGCGAGGCTCGCCGCTACCCGACACTGGTGAGAAC
AGGAGGAGATTTTGCGTTTGTAGCCCCAGCTGGTCTGGCGCCATCCATTT
CTTTGTGGCCTTTACTCGCTTTCTTTCGTTGCAACGTCTGTGCTTTGTAA
CTTGCATTGGCAACCCTCTGCCTTTGGCGGGTCGCGGCCGCCACTGCCTT
GCGTCGTGGCCGTTCTAGGATTTGGGATAGCTGTTTACAAGGAGCATTAT
AGGGCGTATTGCTGATGACCTTGTATGTTATCCTCCTTTGAGTGCATGGC
TGGCTGATGATAAGACGCTCAAGATGCTGACAACAGCACTGCCGATTGGC
CTTCGAACCTTACCAGTCCTCTTCATTCATCCCCTTTTCTTTTCTTCTCT
CGCCGCAGGACTGGCTGGAGGCGCGGTGCGTCGCGCAGCGAAAAGAGGCC
GAAGAGAAAAAGCTACGGGAGCAGGATGAGCGCCGGGTCAAGTGGCGCAT
CCGGCTCAAGTCCGAGAGGATCCGGCAGGAGGCCTATGACCTCTCCGAAG
CCGTCCAGAGAGACGCCGCCGCCGAGCGCGCCGCCGTTCTGACGCGCCTG
CAGGAGGGCGCTCATGCCCGCTCACGCTGGCTGCAGGCCAACATCGCCTG
GCAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1436:3696..4501+

>mRNA_P-wetherbeei_contig1436.3.1 ID=mRNA_P-wetherbeei_contig1436.3.1|Name=mRNA_P-wetherbeei_contig1436.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1436:3696..4501+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGGGAAGCTACCAACCAGCCGCAAAGCCCAGCGCACCGCCCGCAA
GGCGCAGAAGATCGGGCTGATGACGGCCCGCCTCGGCGGCGTGTTGGTGG
AGGCCGTCGTGGTGAATCCGATCGCAAGCAAGTGGAAGGCGTTCCACGAC
ATGTGCACGGCCCAGCGCGAGGCTCGCCGCTACCCGACACTGGACTGGCT
GGAGGCGCGGTGCGTCGCGCAGCGAAAAGAGGCCGAAGAGAAAAAGCTAC
GGGAGCAGGATGAGCGCCGGGTCAAGTGGCGCATCCGGCTCAAGTCCGAG
AGGATCCGGCAGGAGGCCTATGACCTCTCCGAAGCCGTCCAGAGAGACGC
CGCCGCCGAGCGCGCCGCCGTTCTGACGCGCCTGCAGGAGGGCGCTCATG
CCCGCTCACGCTGGCTGCAGGCCAACATCGCCTGGCAG
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