mRNA_P-wetherbeei_contig1435.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1435.3.1
Unique NamemRNA_P-wetherbeei_contig1435.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1435.3.1 vs. uniprot
Match: A0A836CNA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.900e-20
Identity = 79/185 (42.70%), Postives = 107/185 (57.84%), Query Frame = 3 
Query:  234 RNFADESFRPERASFLGDLQALNRQL----RSREATLLKANQEKEALQLRLRREMLKWRATRAELMSEMSVLRTARQEGDDLLAASIQRGDQQAAELEGLKVSARRADKLFREQLETERRQHKSVLEEAAAERKALSQRLEALQLSLQRGHRAWGSERGTYAAAAAEATQRAELAMSAADELRRR 776
            R+ ADE FR ER  FLGD+++L +QL    R R      A +  +ALQ   RR      A  AE   E + +  +++  + LLAA++   D++ A+ E L+   R A +   + LETERRQH+ VLEE AAER+ L    +  +L+LQ G R W  ER TYAAA AEA QRAE A +AA + R R
Sbjct:  188 RHTADECFREEREGFLGDIRSLQQQLDFKDRERAKDAAAAMRAAKALQEDARR----LSARLAESEREKAAVTASKRHCEGLLAAALAHADERGADAEALQRRLRSAQQQSADALETERRQHRLVLEEGAAERRNLEGMCDGGRLALQEGRRRWALERTTYAAAVAEACQRAEAAEAAAADARAR 368
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1435.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNA8_9STRA4.900e-2042.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1435contigP-wetherbeei_contig1435:5445..7199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size812
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003810.1
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.8388138-UTR-P-wetherbeei_contig1435:5444..55751683186018.8388138-UTR-P-wetherbeei_contig1435:5444..5575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1435 5445..5575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.849212-CDS-P-wetherbeei_contig1435:5575..59681683186018.849212-CDS-P-wetherbeei_contig1435:5575..5968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1435 5576..5968 +
1683186018.85883-CDS-P-wetherbeei_contig1435:6229..62951683186018.85883-CDS-P-wetherbeei_contig1435:6229..6295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1435 6230..6295 +
1683186018.8681245-CDS-P-wetherbeei_contig1435:6611..68061683186018.8681245-CDS-P-wetherbeei_contig1435:6611..6806Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1435 6612..6806 +
1683186018.8768487-CDS-P-wetherbeei_contig1435:7172..71991683186018.8768487-CDS-P-wetherbeei_contig1435:7172..7199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1435 7173..7199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1435.3.1prot_P-wetherbeei_contig1435.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1435 5576..7199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1435.3.1

>prot_P-wetherbeei_contig1435.3.1 ID=prot_P-wetherbeei_contig1435.3.1|Name=mRNA_P-wetherbeei_contig1435.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MLGLVSGGGASSGGRARTRHPVTPARSASQPATTRNFADESFRPERASFL
GDLQALNRQLRSREATLLKANQEKEALQLRLRREMLKWRATRAELMSEMS
VLRTARQEGDDLLAASIQRGDQQAAELEGLKVSARRADKLFREQLETERR
QHKSVLEEAAAERKALSQRLEALQLSLQRGHRAWGSERGTYAAAAAEATQ
RAELAMSAADELRRRGTEMEERLSVAM
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mRNA from alignment at P-wetherbeei_contig1435:5445..7199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1435.3.1 ID=mRNA_P-wetherbeei_contig1435.3.1|Name=mRNA_P-wetherbeei_contig1435.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-wetherbeei_contig1435:5445..7199+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTGTTTTGGGGGGCTGAGAGCACGGGTGAGCGCAATTTTCTCCTGTGC
TTGTATTTAGTTAGGCGGTCGCGTTTGTTTTTGGCGCGCCAGACTTTGAA
TCGACACAACGGCCCTCCCCTATAGGAGAGAATGCTCGGGCTCGTTAGCG
GCGGCGGGGCGAGCAGTGGCGGCCGTGCAAGAACAAGGCACCCAGTGACA
CCTGCCCGGTCCGCCAGCCAGCCAGCGACGACTCGCAACTTCGCCGACGA
AAGCTTTCGGCCAGAGCGCGCGTCCTTCCTCGGTGATCTTCAAGCACTTA
ACCGCCAGCTCAGAAGCCGGGAAGCCACCCTGCTCAAGGCCAACCAAGAG
AAGGAGGCGCTCCAGCTCCGATTGCGCCGGGAAATGCTGAAATGGCGTGC
CACACGCGCGGAGCTCATGTCAGAGATGTCGGTACTGCGGACGGCTCGGC
AGGAAGGCGATGACCTCCTGGCGGCAAGCATCCAGCGAGGAGATCAGCAG
GCCGCCGAATTGGAGGGGCTGAAAGTAAGTAGCGTTGCGTCTGAATTTAG
AAGCGGTAGTCCATGGTGATGTTGGGCATTAGGGGGCAATGATTTACAAA
CGGTGAAGAGATGGTTTTTGCAATCCAATGGAGCGGATAACTTGCGAAAG
CCGAAATCTCTTTCACGTTGGCAGATTAGCGACTATAGATTGTTTTTTCC
CCACGAGATGCCTAAGGAACTCTGCATAACTTCATTTTCCCTTTTTCTGG
TCGGCGAACTCCACCTGTCGTCGGTCTGGTGGCAGGTTAGCGCGCGGCGC
GCCGATAAGCTTTTCCGGGAGCAGCTCGAAACGGAGCGGCGACAGCACAA
AGTAAGCAGTCATGATTTCCTTTCCCGTCGTCCGCATCAATGTCTTAGGC
TCAGCGGTCCTTTATTGACACGACCGGACATCCCTTGTTTTCTCCCGCCT
TAGGAAGGGCGCCATTTTCGCAGCAAAAAGCTGGCTGCATCTGTGCTGCC
TCCTTCCATGTTGTTCGGATGTTTGCACTTTCTTTCTCTGTTTCCCTCCC
CAGATGGATAATTCAACGGCTGACTTCAGTTTAGACAATAACCGCATGGA
CGTTTGCCTTTTGACCGGGCGGGCTGTCCTCTACACGGCCGGCCGACCGG
CCGGCCGTCGTCCGCAGAGTGTCCTGGAGGAGGCCGCCGCGGAGCGCAAG
GCGCTCTCGCAGCGGCTGGAGGCCCTGCAGCTGTCGCTGCAACGCGGCCA
CCGCGCCTGGGGAAGCGAGCGCGGGACGTACGCAGCGGCGGCGGCGGAGG
CAACGCAGCGAGCGGAGCTGGCCATGTCCGCCGCCGACGAGCTGCGGCGC
CGCGGGACGGAGGTGAATGAGCGTTTTGGAGAGGGAAGCGCGGGAAACTC
GTGCTCGGGGGGGCAATCTGTGCACTCGCAACGATAACTGCGATTAGCGG
TGGCATGTGCGAATCAGTGGCGGTGCCTGTGGTTACTGGCAGCGACCGCG
GCAGTGACGGCGCCGGCAGTCAGTCGCCATTGCGTTGGTGGGGTTGCGGC
CACGTCGACGATGCAGCAGCGGCGGCATTAGCGCTGCCAGGGCAGACTCA
ATGGATCCTTTCATTGCCTTAGAACTGCCAAGATCTTTGACCAAACAAAC
TATTTTCCCCCTGACATGGGCGGACTACCTCATCCTGCATTCTTTCGATA
AAACACAACGGGAATGCAACGACTGCAGATGGAGGAGCGGCTGTCGGTGG
CGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1435:5445..7199+

>mRNA_P-wetherbeei_contig1435.3.1 ID=mRNA_P-wetherbeei_contig1435.3.1|Name=mRNA_P-wetherbeei_contig1435.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig1435:5445..7199+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGCTCGTTAGCGGCGGCGGGGCGAGCAGTGGCGGCCGTGCAAG
AACAAGGCACCCAGTGACACCTGCCCGGTCCGCCAGCCAGCCAGCGACGA
CTCGCAACTTCGCCGACGAAAGCTTTCGGCCAGAGCGCGCGTCCTTCCTC
GGTGATCTTCAAGCACTTAACCGCCAGCTCAGAAGCCGGGAAGCCACCCT
GCTCAAGGCCAACCAAGAGAAGGAGGCGCTCCAGCTCCGATTGCGCCGGG
AAATGCTGAAATGGCGTGCCACACGCGCGGAGCTCATGTCAGAGATGTCG
GTACTGCGGACGGCTCGGCAGGAAGGCGATGACCTCCTGGCGGCAAGCAT
CCAGCGAGGAGATCAGCAGGCCGCCGAATTGGAGGGGCTGAAAGTTAGCG
CGCGGCGCGCCGATAAGCTTTTCCGGGAGCAGCTCGAAACGGAGCGGCGA
CAGCACAAAAGTGTCCTGGAGGAGGCCGCCGCGGAGCGCAAGGCGCTCTC
GCAGCGGCTGGAGGCCCTGCAGCTGTCGCTGCAACGCGGCCACCGCGCCT
GGGGAAGCGAGCGCGGGACGTACGCAGCGGCGGCGGCGGAGGCAACGCAG
CGAGCGGAGCTGGCCATGTCCGCCGCCGACGAGCTGCGGCGCCGCGGGAC
GGAGATGGAGGAGCGGCTGTCGGTGGCGATG
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