mRNA_P-wetherbeei_contig1434.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1434.2.2
Unique NamemRNA_P-wetherbeei_contig1434.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1434.2.2 vs. uniprot
Match: D7FKQ0_ECTSI (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKQ0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.290e-9
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 1 
Query: 1267 ARHELEERHRSSDRELAAAWLAVTQCDVVGVAKDSALGEMQADREK-------MRQENARLRGELDDIDVSLVEAMATEGISLEQLNLQSTPLSRRL 1536
            AR + +E+ + S RE AA WLAV + DV+  AKDSA+ E+Q + E        ++  NA L  EL  +D+SL++A+   G++L+ + LQ+TP+SRRL
Sbjct: 2163 ARSDFDEQMKQSARERAALWLAVNKLDVLEAAKDSAIKELQKEGEDKARALKVLQAHNAGLTRELGQVDMSLMQALEDNGLTLDSVRLQNTPMSRRL 2259
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1434.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKQ0_ECTSI6.290e-942.27Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1434contigP-wetherbeei_contig1434:1507..4806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKQ0
PFAMsKinesin
Model size1793
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.03e-09
EggNOG OGsCOG5059@1|root,KOG0241@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size1791
COG categoryZ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1434.2.2prot_P-wetherbeei_contig1434.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1434 1509..4806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.4759915-CDS-P-wetherbeei_contig1434:1508..19581683186018.4759915-CDS-P-wetherbeei_contig1434:1508..1958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 1509..1958 -
1683186018.485962-CDS-P-wetherbeei_contig1434:2306..24951683186018.485962-CDS-P-wetherbeei_contig1434:2306..2495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 2307..2495 -
1683186018.4948387-CDS-P-wetherbeei_contig1434:2739..31171683186018.4948387-CDS-P-wetherbeei_contig1434:2739..3117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 2740..3117 -
1683186018.5038044-CDS-P-wetherbeei_contig1434:3296..34491683186018.5038044-CDS-P-wetherbeei_contig1434:3296..3449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 3297..3449 -
1683186018.5135322-CDS-P-wetherbeei_contig1434:3666..38011683186018.5135322-CDS-P-wetherbeei_contig1434:3666..3801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 3667..3801 -
1683186018.523601-CDS-P-wetherbeei_contig1434:4131..42661683186018.523601-CDS-P-wetherbeei_contig1434:4131..4266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 4132..4266 -
1683186018.5323036-CDS-P-wetherbeei_contig1434:4455..48061683186018.5323036-CDS-P-wetherbeei_contig1434:4455..4806Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1434 4456..4806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1434.2.2

>prot_P-wetherbeei_contig1434.2.2 ID=prot_P-wetherbeei_contig1434.2.2|Name=mRNA_P-wetherbeei_contig1434.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=597bp
EEGLEQGNEQGRAMAAAVAAAVRARLERRLEEAEAAAAVSARCEVAAHEA
TAAVEVRWAAAQATAAAAVEEAKRAREEILSRVAAAQRTARAAEAERDTF
RAALDQARLENQESVAEAGARAERAEAGRDAAAAVQRCLEQELAAYRRQA
DEQQQLQQRRQQALERLTAEGRSLAARHAALLQHLDEEADLLRRGNDEMR
CLAALLEEAKPGMASGSSAGGAAATQAELLAERAAHQATRRSLEKAKRRL
LRHSVERQGNGAAAADGAVRRLPRLPPSHPSAVADPVDDTWTAPDSASGA
SRSGSILDPALATEWTAADRLALLEELRRLSAQVTELKEAAAARRAAAVK
ETAAERAEAEMRQTRALAEVLDSSRAPLAVLKEQLAQLSEAKAEAQEECR
QLRQRAEEAEKAAAVAAAELRAARHELEERHRSSDRELAAAWLAVTQCDV
VGVAKDSALGEMQADREKMRQENARLRGELDDIDVSLVEAMATEGISLEQ
LNLQSTPLSRRLSIVGVGNSGGGGGGGSGPGTGALSPAEPGGRGSIAGGG
GVNGLTGGGGGIAGLSPVSATSAASLSVHAVPLVMPTAGHGGGFPVA
back to top

mRNA from alignment at P-wetherbeei_contig1434:1507..4806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1434.2.2 ID=mRNA_P-wetherbeei_contig1434.2.2|Name=mRNA_P-wetherbeei_contig1434.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3300bp|location=Sequence derived from alignment at P-wetherbeei_contig1434:1507..4806- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAGGCCTAGAACAGGGCAACGAGCAGGGCCGGGCGATGGCGGCGGC
GGTGGCTGCGGCGGTGCGGGCAAGGTTGGAGCGGCGTCTGGAGGAAGCGG
AGGCGGCGGCGGCGGTGTCAGCGCGCTGTGAAGTCGCGGCGCACGAGGCG
ACAGCTGCCGTGGAGGTGCGCTGGGCGGCGGCGCAGGCGACGGCGGCCGC
TGCCGTAGAGGAGGCAAAGCGCGCCCGTGAGGAGATTTTGTCGCGCGTGG
CGGCAGCGCAGCGGACGGCGCGGGCGGCGGAGGCGGAGCGTGACACATTC
CGGGCGGCGCTGGATCAGGCACGGCTCGAGAACCAGGAAAGCGTGGCAGA
AGTGAGAACGTACTGTGTCTTTTTCACCTCATCGACATTCGTTGCGACGC
AATGCCGGTTTTGCGAAAGCCTGAGGTGCTGCGGTCCGTGGTGCATGTGG
GCACTGCTATTGTTTTCACTATCTGCCGAATCATTTCTGTTCGTGCTTTT
TTTTAAACCATTGCTGCTGTCGCTATACGCTAAACTGCAGGCAGGTGCAC
GGGCGGAGCGTGCCGAGGCGGGCCGCGATGCGGCGGCCGCGGTGCAGCGG
TGCTTGGAGCAGGAGCTGGCGGCGTACCGCCGGCAGGCCGATGAGCAGCA
ACAACTCCAGCAGCGCCGACAACAGGTGCGGAGCAGGAAAAAGACTGCGA
CCGCCGCCGCAGAGCGGACTCGTGCGGCGGCGCCTTACCTCATCGGCTGA
GCGGCTTGGCTACCCCTTCCCTGTTGATAGCAATTTCGTCTCGCAGCAGC
GTTGACCTTCTCGCTTCTATCGTCTGTTCCCATAAGGTGGGAGGTCTCTC
TCACAAGCGATGCATTCTGATCATTTCTTCTTTCTTCCTCCTTCTGGTGC
TGCTGCCGCTACCACCGCTGTACTGCCGCCGCTGCTGCTGCTCCTGCTGC
TTCGCCTACTAACTCCGTAACCCCTTCTCGGTTGGCTTTGACGGGCGGGC
GGCAGGCGCTGGAGCGGCTGACGGCAGAAGGGCGGTCTCTGGCGGCGCGG
CATGCGGCTTTGCTGCAACACCTCGACGAGGAGGCCGACCTCCTGCGGCG
GGGCAACGACGAGATGCGCTGCCTCGCTGCGCTGCTCGAGGTGAGAAATA
AGGACAAAAAGAAGGGAAGAGGAAGGGCCGGAAGAAGGAAAAAAGGGGTC
TCAGGGCCTCCATGCCTGCTATATATAAAAGGCCGAAAGCGGCTTCGCGT
AATGAGCACTCTTGCTGCCTGTATGAGCAGCAGTTTCTTTCGTCCTTTGA
CCCTGACGCGGCTGACGCTGGCCGTCCGTCTTTCTGCTGCGTGGTATTGT
TTTTCAGGAAGCTAAACCCGGCATGGCCAGCGGCAGCAGCGCCGGGGGAG
CGGCAGCGACGCAGGCAGAGCTGCTGGCGGAGCGGGCGGCACACCAGGCG
ACGCGGCGGTCTCTGGAGAAGGCCAAGCGACGGCTGCTGCGGCATTCCGT
CGAACGGCAGGTGGGTCGGCTCGCCTGCTTTTTCCTCTTTGAGAAAGGAA
ATGAATGGAGCTGTGTTAGATTGCGTGTGTCCTTCCCTCGAGGTCGTAAG
CTATTCTTGTTAACGCCAATGACCTCGGAAACAGCTAAGCACTGCTAACA
TTGTGCTGCCTTGGCTGCCTCTGGCGTCGCTTTTTGCAGGGCAACGGAGC
TGCCGCCGCAGACGGTGCGGTGCGACGCTTGCCGCGCCTTCCCCCGTCAC
ACCCCTCCGCGGTCGCCGATCCCGTCGACGACACATGGACGGCACCGGAC
TCGGCCAGCGGCGCGTCCAGATCGGGATCTATCCTGGACCCGGCGCTGGC
TACGGAATGGACGGCGGCGGATCGCCTGGCGCTGCTGGAGGAGCTGCGGC
GGCTGTCGGCGCAGGTGACGGAGCTGAAGGAGGCGGCAGCGGCGCGACGG
GCGGCCGCGGTCAAGGAAACGGCGGCGGAGCGCGCCGAGGCGGAGATGAG
GCAGACGCGGGCGCTGGCAGAGGTCCTGGACAGCTCGCGGGCGCCGCTGG
CCGTGCTCAAGGAGCAGGTGAGGATCGGCTGTCATAGTCGGCTTATTAGA
AGGTCGCACGAGGGTCGGGGTTTTCAGTTCGATGGGTTTGTCTGGGTAAC
CACCACTAGCCATTTAAAAAGATGGTGAAAAATGTTTGTGCGTCTGCTGG
GACAAGATGTACCTCCTCCTTCGCAGCAAGTGACGTATGCTTATTTTTTT
ATGATTTCAACGATTTACCATTCTGTCCGTGCTATGGCCTGGCGCTGACA
AACACCTGCAGCTGGCGCAGCTGAGCGAGGCAAAGGCGGAGGCGCAGGAG
GAGTGCCGGCAGCTGCGGCAGCGAGCTGAGGAGGCCGAGAAGGCGGCGGC
AGTGGCGGCGGCCGAGCTGCGCGCCGCCCGCCACGAGCTCGAGGAGCGCC
ACCGCTCGAGTGACAGGGAGCTCGCGGCCGCCTGGCTCGCCGTCACCCAG
GTGACTGCTGGACTGCTAACCTTTGTGGGCTAGGGCTTCTTTCCCCTTTT
GTTGAAAGCCGTCTTTCATCCTCCGCAGGTTTCTGCAGCTTTTCGGGCTG
CCACGACGCTTTTGAGGCTCCCTCTTTTAATATCGCGCCTAGCAGCAGCT
GGTGTTGCTGTTCATTTTCCTCCTCGATGGCCCCATCGCTACAGTACCAA
GGAGTGCAGTTTCGCGTCTTTCTTCCCTCTACTCGACCGCTCGTCCGTTC
TCTTCCTCAAGCTGTCTTTATTTCGCTTTCTCTCACCGCATGCTGCTGTC
TCATTCTTCTCCCTCCTTTCTCCCTCTCGCTTTTTCCTGTGTCGGCAGTG
CGACGTAGTGGGGGTGGCGAAGGACTCGGCGCTTGGCGAGATGCAGGCTG
ACCGCGAAAAGATGCGGCAGGAGAACGCCCGCCTGCGCGGCGAGCTCGAC
GACATCGATGTGTCGCTCGTCGAGGCCATGGCCACCGAGGGCATTTCCCT
CGAGCAGCTCAACCTCCAAAGCACGCCGCTCTCGCGCCGCCTCAGCATTG
TCGGCGTCGGCAATAGCGGCGGCGGTGGTGGCGGCGGCAGCGGACCCGGG
ACTGGGGCGCTATCGCCGGCCGAGCCTGGTGGCAGGGGTTCTATCGCTGG
TGGCGGCGGCGTGAACGGTTTAACCGGCGGCGGCGGGGGCATCGCGGGCT
TATCGCCGGTGTCGGCGACGTCCGCGGCATCGTTGTCGGTGCACGCGGTG
CCGCTGGTGATGCCAACTGCGGGGCATGGCGGCGGCTTCCCGGTGGCAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1434:1507..4806-

>mRNA_P-wetherbeei_contig1434.2.2 ID=mRNA_P-wetherbeei_contig1434.2.2|Name=mRNA_P-wetherbeei_contig1434.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1791bp|location=Sequence derived from alignment at P-wetherbeei_contig1434:1507..4806- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAGGCCTAGAACAGGGCAACGAGCAGGGCCGGGCGATGGCGGCGGC
GGTGGCTGCGGCGGTGCGGGCAAGGTTGGAGCGGCGTCTGGAGGAAGCGG
AGGCGGCGGCGGCGGTGTCAGCGCGCTGTGAAGTCGCGGCGCACGAGGCG
ACAGCTGCCGTGGAGGTGCGCTGGGCGGCGGCGCAGGCGACGGCGGCCGC
TGCCGTAGAGGAGGCAAAGCGCGCCCGTGAGGAGATTTTGTCGCGCGTGG
CGGCAGCGCAGCGGACGGCGCGGGCGGCGGAGGCGGAGCGTGACACATTC
CGGGCGGCGCTGGATCAGGCACGGCTCGAGAACCAGGAAAGCGTGGCAGA
AGCAGGTGCACGGGCGGAGCGTGCCGAGGCGGGCCGCGATGCGGCGGCCG
CGGTGCAGCGGTGCTTGGAGCAGGAGCTGGCGGCGTACCGCCGGCAGGCC
GATGAGCAGCAACAACTCCAGCAGCGCCGACAACAGGCGCTGGAGCGGCT
GACGGCAGAAGGGCGGTCTCTGGCGGCGCGGCATGCGGCTTTGCTGCAAC
ACCTCGACGAGGAGGCCGACCTCCTGCGGCGGGGCAACGACGAGATGCGC
TGCCTCGCTGCGCTGCTCGAGGAAGCTAAACCCGGCATGGCCAGCGGCAG
CAGCGCCGGGGGAGCGGCAGCGACGCAGGCAGAGCTGCTGGCGGAGCGGG
CGGCACACCAGGCGACGCGGCGGTCTCTGGAGAAGGCCAAGCGACGGCTG
CTGCGGCATTCCGTCGAACGGCAGGGCAACGGAGCTGCCGCCGCAGACGG
TGCGGTGCGACGCTTGCCGCGCCTTCCCCCGTCACACCCCTCCGCGGTCG
CCGATCCCGTCGACGACACATGGACGGCACCGGACTCGGCCAGCGGCGCG
TCCAGATCGGGATCTATCCTGGACCCGGCGCTGGCTACGGAATGGACGGC
GGCGGATCGCCTGGCGCTGCTGGAGGAGCTGCGGCGGCTGTCGGCGCAGG
TGACGGAGCTGAAGGAGGCGGCAGCGGCGCGACGGGCGGCCGCGGTCAAG
GAAACGGCGGCGGAGCGCGCCGAGGCGGAGATGAGGCAGACGCGGGCGCT
GGCAGAGGTCCTGGACAGCTCGCGGGCGCCGCTGGCCGTGCTCAAGGAGC
AGCTGGCGCAGCTGAGCGAGGCAAAGGCGGAGGCGCAGGAGGAGTGCCGG
CAGCTGCGGCAGCGAGCTGAGGAGGCCGAGAAGGCGGCGGCAGTGGCGGC
GGCCGAGCTGCGCGCCGCCCGCCACGAGCTCGAGGAGCGCCACCGCTCGA
GTGACAGGGAGCTCGCGGCCGCCTGGCTCGCCGTCACCCAGTGCGACGTA
GTGGGGGTGGCGAAGGACTCGGCGCTTGGCGAGATGCAGGCTGACCGCGA
AAAGATGCGGCAGGAGAACGCCCGCCTGCGCGGCGAGCTCGACGACATCG
ATGTGTCGCTCGTCGAGGCCATGGCCACCGAGGGCATTTCCCTCGAGCAG
CTCAACCTCCAAAGCACGCCGCTCTCGCGCCGCCTCAGCATTGTCGGCGT
CGGCAATAGCGGCGGCGGTGGTGGCGGCGGCAGCGGACCCGGGACTGGGG
CGCTATCGCCGGCCGAGCCTGGTGGCAGGGGTTCTATCGCTGGTGGCGGC
GGCGTGAACGGTTTAACCGGCGGCGGCGGGGGCATCGCGGGCTTATCGCC
GGTGTCGGCGACGTCCGCGGCATCGTTGTCGGTGCACGCGGTGCCGCTGG
TGATGCCAACTGCGGGGCATGGCGGCGGCTTCCCGGTGGCA
back to top