mRNA_P-wetherbeei_contig14337.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14337.1.1
Unique NamemRNA_P-wetherbeei_contig14337.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A8J6C655_DIALT (Proteasome subunit alpha type n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C655_DIALT)

HSP 1 Score: 100 bits (250), Expect = 6.020e-24
Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPN-FREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   VGI  ++GVVL A ++ + +L EP+   EK++ VD HV CA AG+TADA  LI   R+AA+R+ L +QEPMPV  L     D KQ +TQ GGLRP+G S+L
Sbjct:   26 EAISHAGTAVGILSSEGVVLAAEKKITSKLLEPSKSSEKMYMVDEHVACAVAGITADANILINYARQAAQRYQLTYQEPMPVEQLVQALCDTKQGYTQYGGLRPFGVSVL 135          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A6H5KZL2_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL2_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.930e-23
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRR-RSGRLQEPNFREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQ 279
            +AVARA P VGIC ++GVVLC+L+  R+ RLQ  + R K  +VD H+VC +AGLTADA  L+   R +A++H+L FQEP+PV  LA+  ADVKQ
Sbjct:   57 EAVARARPAVGICTDEGVVLCSLKTIRNKRLQVGDQRVKTSRVDSHIVCTSAGLTADAMVLVKDCRVSAQQHSLTFQEPIPVQKLAAHVADVKQ 150          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A835YYM9_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.550e-23
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    4 AVARASPIVGICVNDGVVLCALRRRSGRLQEPNFREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            AV RA P +GI  ++G++LC+LR+ +  LQ+P+F +K+H +D H+V    GL +DAA L+   R+   ++ L  QE MPV ++ S   D+KQ FTQRGGLRPWG S L
Sbjct:   36 AVDRAKPCIGIKTSEGILLCSLRQ-AFPLQDPDFTQKVHIIDRHIVATGCGLVSDAAQLVRETRKWTLKYRLEHQEGMPVEAVVSTLCDIKQVFTQRGGLRPWGVSFL 142          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A6V2NC33_EMIHU (Proteasome subunit alpha type n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2NC33_EMIHU)

HSP 1 Score: 97.4 bits (241), Expect = 1.770e-22
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPN-FREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   +G+  +DGVVL A ++ S +L EP+   EK++ VD HV CA AG+TADA  LI   R  A+RH   +QEP PV  L  R  D KQ++TQ GGLRP+G S+L
Sbjct:   42 EAISHAGTALGVLASDGVVLAAEKKISSKLLEPSKSSEKMYMVDDHVACAVAGITADANILINQARLHAQRHLYNYQEPQPVEQLVQRLCDEKQAYTQYGGLRPFGVSML 151          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A2P6TMI5_CHLSO (Proteasome subunit alpha type-4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TMI5_CHLSO)

HSP 1 Score: 96.7 bits (239), Expect = 1.870e-22
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPNF----REKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   VGI   DGVVL A +R + +L +       REK++++D H+ CA AG+TADA  L+   R AA+R+   +QEPMPV  L  +  D KQ +TQ GGLRP+G SLL
Sbjct:    2 EAISNAGSCVGILAKDGVVLAAEKRITSKLLDSQAVGVRREKMYRLDDHIACAVAGITADANILVNSCRLAAQRYLFTYQEPMPVDQLVRQLCDTKQGYTQYGGLRPFGVSLL 114          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: E1ZHW7_CHLVA (Proteasome subunit alpha type n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHW7_CHLVA)

HSP 1 Score: 96.3 bits (238), Expect = 3.490e-22
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPNF----REKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   VGI   DGVVL A +R + +L +       REK++++D H+ CA AG+TADA  L+   R  A+RH   +QEPMPV  L     D KQ +TQ GGLRP+G SLL
Sbjct:   26 EAISNAGSCVGILAKDGVVLAAEKRITSKLLDTQAVGVRREKMYRLDDHIACAVAGITADANILVNTCRLQAQRHLFTYQEPMPVDQLVRGLCDTKQGYTQYGGLRPFGVSLL 138          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A7S3F9S0_9EUKA (Proteasome subunit beta n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F9S0_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 4.410e-22
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPN-FREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   +GI  +DG+VL A ++ + +L EP    EK++ +D HV CA AG+TADA  LI   R  A+R+   +QEP PV  L  R  D KQ++TQ GGLRP+G S+L
Sbjct:    2 EAISHAGTAIGILASDGIVLAAEKKLTSKLLEPTKSSEKMYMIDEHVACAVAGITADANILINQARLHAQRYRFSYQEPQPVEQLVQRLCDEKQAYTQYGGLRPFGVSML 111          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A1D1ZPR8_AUXPR (Proteasome subunit alpha type n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZPR8_AUXPR)

HSP 1 Score: 95.9 bits (237), Expect = 5.720e-22
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPNF----REKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   VG+   DGVVL A ++ + +L +       REKL+Q+D HV CA AG+TADA  L+   R  A+R+ L FQEP+PV  L     D KQ +TQ GGLRP+G SLL
Sbjct:   26 EAISNAGSCVGVLATDGVVLAAEKKITSKLLDTTAVGVKREKLYQLDDHVACAVAGITADANILVNTCRLHAQRYTLQFQEPIPVDQLVRALCDTKQGYTQYGGLRPFGVSLL 138          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: A0A7S3U565_9SPIT (Proteasome subunit alpha type (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U565_9SPIT)

HSP 1 Score: 95.1 bits (235), Expect = 1.260e-21
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEP-NFREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   +G+  +DGVVL A ++ S +L EP    EK++ +D HV CA AG+TADA  LI   R  A+R+   +QEP PV  L  R  D KQ++TQ GGLRP+G S+L
Sbjct:   37 EAISHAGTALGVLASDGVVLAAEKKMSSKLLEPAKSSEKMYMIDDHVACAVAGITADANILINQARLHAQRYLYNYQEPQPVEQLVQRLCDEKQAYTQYGGLRPFGVSML 146          
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Match: T2MGG5_HYDVU (Proteasome subunit alpha type n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MGG5_HYDVU)

HSP 1 Score: 94.7 bits (234), Expect = 1.770e-21
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 QAVARASPIVGICVNDGVVLCALRRRSGRLQEPNFREKLHQVDVHVVCAAAGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGGLRPWGASLL 327
            +A++ A   +GI   DGVVL A RR + +L +    +K++++D + VC+ AG+T+DA  L A LR  A+R+ L++QE MPV  L S   D+KQ +TQ GG RP+G SLL
Sbjct:   26 EAISHAGTCLGILATDGVVLAAERRNTNKLLDDVLSDKIYKLDENTVCSVAGITSDANVLTAQLRLTAQRYLLLYQEAMPVEQLVSSLCDLKQRYTQVGGFRPFGVSLL 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14337.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6C655_DIALT6.020e-2449.09Proteasome subunit alpha type n=1 Tax=Diacronema l... [more]
A0A6H5KZL2_9PHAE2.930e-2355.32Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A835YYM9_9STRA3.550e-2347.22Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A6V2NC33_EMIHU1.770e-2248.18Proteasome subunit alpha type n=1 Tax=Emiliania hu... [more]
A0A2P6TMI5_CHLSO1.870e-2246.02Proteasome subunit alpha type-4 n=1 Tax=Chlorella ... [more]
E1ZHW7_CHLVA3.490e-2246.02Proteasome subunit alpha type n=1 Tax=Chlorella va... [more]
A0A7S3F9S0_9EUKA4.410e-2245.45Proteasome subunit beta n=1 Tax=Haptolina ericina ... [more]
A0A1D1ZPR8_AUXPR5.720e-2246.90Proteasome subunit alpha type n=1 Tax=Auxenochlore... [more]
A0A7S3U565_9SPIT1.260e-2146.36Proteasome subunit alpha type (Fragment) n=1 Tax=S... [more]
T2MGG5_HYDVU1.770e-2144.95Proteasome subunit alpha type n=3 Tax=Hydra vulgar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14337contigP-wetherbeei_contig14337:2..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog554065.XP_005846778.1
PFAMsProteasome,Proteasome_A_N
Model size327
Max annot lvl3041|Chlorophyta
KEGG koko:K02728
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.71e-23
EggNOG OGsCOG0638@1|root,KOG0178@2759|Eukaryota,37QI6@33090|Viridiplantae,34K66@3041|Chlorophyta
EC3.4.25.1
DescriptionThe proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Cds size327
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.372028-CDS-P-wetherbeei_contig14337:1..3281683186018.372028-CDS-P-wetherbeei_contig14337:1..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14337 2..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14337.1.1prot_P-wetherbeei_contig14337.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14337 2..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14337.1.1

>prot_P-wetherbeei_contig14337.1.1 ID=prot_P-wetherbeei_contig14337.1.1|Name=mRNA_P-wetherbeei_contig14337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
QAVARASPIVGICVNDGVVLCALRRRSGRLQEPNFREKLHQVDVHVVCAA
AGLTADAAALIALLREAARRHALVFQEPMPVGSLASRAADVKQSFTQRGG
LRPWGASLL
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mRNA from alignment at P-wetherbeei_contig14337:2..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14337.1.1 ID=mRNA_P-wetherbeei_contig14337.1.1|Name=mRNA_P-wetherbeei_contig14337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig14337:2..328- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCGTTGCCCGCGCCTCGCCGATCGTGGGCATCTGCGTCAACGATGG CGTCGTACTCTGCGCCCTGCGGCGCCGTAGCGGACGGCTACAAGAACCAA ACTTTCGGGAAAAGCTGCACCAAGTCGACGTCCACGTCGTCTGCGCCGCC GCCGGCTTGACCGCCGACGCCGCGGCGCTCATCGCACTGCTGCGGGAAGC GGCGCGGCGACATGCCCTCGTCTTCCAGGAGCCGATGCCCGTTGGCTCGC TGGCATCGCGTGCCGCCGACGTCAAGCAGAGCTTCACGCAGCGCGGCGGG CTGCGGCCGTGGGGCGCCTCTTTACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14337:2..328-

>mRNA_P-wetherbeei_contig14337.1.1 ID=mRNA_P-wetherbeei_contig14337.1.1|Name=mRNA_P-wetherbeei_contig14337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig14337:2..328- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCCGTTGCCCGCGCCTCGCCGATCGTGGGCATCTGCGTCAACGATGG
CGTCGTACTCTGCGCCCTGCGGCGCCGTAGCGGACGGCTACAAGAACCAA
ACTTTCGGGAAAAGCTGCACCAAGTCGACGTCCACGTCGTCTGCGCCGCC
GCCGGCTTGACCGCCGACGCCGCGGCGCTCATCGCACTGCTGCGGGAAGC
GGCGCGGCGACATGCCCTCGTCTTCCAGGAGCCGATGCCCGTTGGCTCGC
TGGCATCGCGTGCCGCCGACGTCAAGCAGAGCTTCACGCAGCGCGGCGGG
CTGCGGCCGTGGGGCGCCTCTTTACTG
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