mRNA_P-wetherbeei_contig1433.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1433.1.3
Unique NamemRNA_P-wetherbeei_contig1433.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A0P1AP24_PLAHL (Wd domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP24_PLAHL)

HSP 1 Score: 160 bits (404), Expect = 5.220e-48
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE N++NDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVW+T TGDELLTL+GH+NVVYAIAFNNPY
Sbjct:   66 RLLYKLIEKLEVNDSNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWDTQTGDELLTLEGHKNVVYAIAFNNPY 147
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A7S3MF66_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MF66_9STRA)

HSP 1 Score: 164 bits (414), Expect = 9.100e-47
Identity = 75/82 (91.46%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE+NE++DF+LFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTI+GDELLTL+GHRNVVYAIAFNNPY
Sbjct:   66 RLIYKLIEKLENNESSDFFLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTISGDELLTLEGHRNVVYAIAFNNPY 147
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A7S2UT19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT19_9STRA)

HSP 1 Score: 164 bits (414), Expect = 9.290e-47
Identity = 75/82 (91.46%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE++E NDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNT+TG+ELLTL+GHRNVVYAIAFNNPY
Sbjct:   66 RLIYKLIEKLENHEANDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTVTGEELLTLEGHRNVVYAIAFNNPY 147
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A7S2D6W4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6W4_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.590e-46
Identity = 75/82 (91.46%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE+NENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNT +G+ELLTL+GHRNVVYAIAFNNP+
Sbjct:   64 RLLYKLIEKLETNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTESGEELLTLEGHRNVVYAIAFNNPF 145
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A7S2R6E2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6E2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.380e-46
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL++KLIEKLE+NE NDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNT TG+ELLTL+GHRNVVYAIAFNNPY
Sbjct:   76 RLIFKLIEKLETNEMNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTETGEELLTLEGHRNVVYAIAFNNPY 157
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: W2HVY0_PHYPR (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2HVY0_PHYPR)

HSP 1 Score: 160 bits (406), Expect = 1.390e-45
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE N++NDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVW+T TGDELLTL+GH+NVVYAIAFNNPY
Sbjct:   66 RLIYKLIEKLEVNDSNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWDTQTGDELLTLEGHKNVVYAIAFNNPY 147
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: F0WZ26_9STRA (WD domaincontaining protein putative n=25 Tax=Oomycota TaxID=4762 RepID=F0WZ26_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.960e-45
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE NE+NDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVW+T +GDELLTL+GH+NVVYAIAFNNPY
Sbjct:   66 RLIYKLIEKLEINESNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWDTQSGDELLTLEGHKNVVYAIAFNNPY 147
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BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A024GRH3_9STRA (Uncharacterized protein n=5 Tax=Oomycota TaxID=4762 RepID=A0A024GRH3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.960e-45
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLE NE+NDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVW+T +GDELLTL+GH+NVVYAIAFNNPY
Sbjct:   66 RLIYKLIEKLEINESNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWDTQSGDELLTLEGHKNVVYAIAFNNPY 147
[Close]
BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: A0A7S2CLE0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLE0_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.270e-45
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIE+LE+N+NNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNT +G+ELL L+GHRNVVYAIAFNNPY
Sbjct:   90 RLIYKLIERLETNDNNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTESGEELLNLEGHRNVVYAIAFNNPY 171
[Close]
BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Match: F0YJL8_AURAN (Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=F0YJL8_AURAN)

HSP 1 Score: 158 bits (400), Expect = 1.880e-44
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:    1 RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDRTCKVWNTITGDELLTLDGHRNVVYAIAFNNPY 246
            RL+YKLIEKLESNEN+D+YLFKILRAHILPLTNCAFNK GDKFITGSYDRTCK+W T TG+ELLTL+GHRNVVYAIAFNNP+
Sbjct:   66 RLIYKLIEKLESNENSDYYLFKILRAHILPLTNCAFNKQGDKFITGSYDRTCKIWRTETGEELLTLEGHRNVVYAIAFNNPW 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1433.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P1AP24_PLAHL5.220e-4890.24Wd domain-containing protein n=1 Tax=Plasmopara ha... [more]
A0A7S3MF66_9STRA9.100e-4791.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2UT19_9STRA9.290e-4791.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2D6W4_9STRA2.590e-4691.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2R6E2_9STRA6.380e-4691.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W2HVY0_PHYPR1.390e-4590.24Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
F0WZ26_9STRA1.960e-4590.24WD domaincontaining protein putative n=25 Tax=Oomy... [more]
A0A024GRH3_9STRA1.960e-4590.24Uncharacterized protein n=5 Tax=Oomycota TaxID=476... [more]
A0A7S2CLE0_9STRA2.270e-4589.02Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
F0YJL8_AURAN1.880e-4487.80Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1433contigP-wetherbeei_contig1433:318..1145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra72042
PFAMsWD40
Model size330
Max annot lvl4776|Peronosporales
KEGG koko:K19760
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.29e-46
EggNOG OGsKOG0272@1|root,KOG0272@2759|Eukaryota,3QE6G@4776|Peronosporales
DescriptionWD domain, G-beta repeat
Cds size330
COG categoryA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.153781-CDS-P-wetherbeei_contig1433:317..4761683186018.153781-CDS-P-wetherbeei_contig1433:317..476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1433 318..476 +
1683186018.1648898-CDS-P-wetherbeei_contig1433:974..11451683186018.1648898-CDS-P-wetherbeei_contig1433:974..1145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1433 975..1145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1433.1.3prot_P-wetherbeei_contig1433.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1433 318..1145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1433.1.3

>prot_P-wetherbeei_contig1433.1.3 ID=prot_P-wetherbeei_contig1433.1.3|Name=mRNA_P-wetherbeei_contig1433.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
RLVYKLIEKLESNENNDFYLFKILRAHILPLTNCAFNKSGDKFITGSYDR
TCKVWNTITGDELLTLDGHRNVVYAIAFNNPYGDKIITGSFDKTCRLWSA
DTGELQHTYR
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mRNA from alignment at P-wetherbeei_contig1433:318..1145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1433.1.3 ID=mRNA_P-wetherbeei_contig1433.1.3|Name=mRNA_P-wetherbeei_contig1433.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig1433:318..1145+ (Phaeothamnion wetherbeei SAG_119_79)
AGATTGGTGTACAAGTTAATCGAGAAGCTGGAGAGCAACGAGAACAACGA
CTTTTATCTCTTTAAGATTCTCCGCGCGCACATCCTGCCGCTGACGAATT
GCGCCTTCAACAAAAGCGGTGACAAGTTCATCACCGGCAGTTACGACCGC
ACCTGCAAGGTACGAAATGAGCAGACACTTTCGTCAGTAACGGGCTGGCT
GGAGGAGCTTAAAGCATCTGTCATCCTTCCTTTTTGGCTTCTGGCTGGCA
CCTCGCAACCTTTGGCCGATATAGTGGCCCCCACCTGATCTGGAATGAGC
GGCCTGACATGCATGCACCATCGCCGCTTTCTATGGCTCGTCCTTGCATT
TGCAATCGCTGGCGAAAATGTGGCAGAATTCCTTTGCTTGCTCTGGAGGT
CTCCCCCGACGCCGTAGGTATTCGCTGTTCTCGACCTCTTCTCAGGCAAT
TGGCACTATATCGCTTGCGCCCTTTCCCCTCTTCCTTCATTGCTGCGTTG
CTTTGTCGGCGGTGCATCCTGCTGGACGCGGCGGCTCTGTGGCGGCGGCG
GCGGCGGGCGCGCTGGCGGCTCTCAATTGACGGCGATTGCGGCGATTGCG
GCAATGGCGGGTTGTGGCGGCGGCTGCGGCGGTGACGACTGCTGCGTCTG
CCGGCAGGTATGGAACACGATAACAGGAGACGAGTTGCTGACGCTGGACG
GGCACCGGAACGTGGTGTACGCCATCGCGTTCAACAACCCGTACGGCGAC
AAAATTATCACGGGCAGCTTCGACAAGACATGCCGCCTATGGAGCGCGGA
CACCGGCGAGCTCCAGCACACCTACAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1433:318..1145+

>mRNA_P-wetherbeei_contig1433.1.3 ID=mRNA_P-wetherbeei_contig1433.1.3|Name=mRNA_P-wetherbeei_contig1433.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig1433:318..1145+ (Phaeothamnion wetherbeei SAG_119_79)
AGATTGGTGTACAAGTTAATCGAGAAGCTGGAGAGCAACGAGAACAACGA
CTTTTATCTCTTTAAGATTCTCCGCGCGCACATCCTGCCGCTGACGAATT
GCGCCTTCAACAAAAGCGGTGACAAGTTCATCACCGGCAGTTACGACCGC
ACCTGCAAGGTATGGAACACGATAACAGGAGACGAGTTGCTGACGCTGGA
CGGGCACCGGAACGTGGTGTACGCCATCGCGTTCAACAACCCGTACGGCG
ACAAAATTATCACGGGCAGCTTCGACAAGACATGCCGCCTATGGAGCGCG
GACACCGGCGAGCTCCAGCACACCTACAGG
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