mRNA_P-wetherbeei_contig14315.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14315.2.1
Unique NamemRNA_P-wetherbeei_contig14315.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: A0A1Q4DXG2_9PSEU (DUF35_N domain-containing protein n=1 Tax=Pseudonocardia sp. 73-21 TaxID=1895809 RepID=A0A1Q4DXG2_9PSEU)

HSP 1 Score: 134 bits (336), Expect = 1.380e-37
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 PWVPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVVGATSIGAEVDIEIVEVAAGVHLPFA 402
            PWVP+T WPVL  FWAA R G L FPRCT CGR+QWYPQ MCPACRAMAF W +V P G +F+ T +R++F+P    +      LV+    PGV LVTNV     +DV     + A +  +  EV  GV LP +
Sbjct:   11 PWVPDTTWPVLQEFWAAARTGHLVFPRCTACGRYQWYPQAMCPACRAMAFAWDEVAPDGYVFSHTTLRRSFVPGADGQQARHIVLVKFLHVPGVTLVTNVR----EDVEPRVDLRARIAFD--EVGPGVSLPVS 138          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: A0A7G7MBZ5_9PSEU (OB-fold domain-containing protein n=2 Tax=unclassified Pseudonocardia TaxID=2619320 RepID=A0A7G7MBZ5_9PSEU)

HSP 1 Score: 131 bits (329), Expect = 1.590e-36
Identity = 64/134 (47.76%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 PWVPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVVGATSIGAEVDIEIVEVAAGVHLPFA 402
            PW+P+  WP+L  FWAA R+G L FPRCT CGR+QWYPQ MCPACRAMAFEW +VR  G +F+ T +R++F+P           LV+    PGV LVTNV      D+     + A +  +  +VA GV LP +
Sbjct:   11 PWLPDITWPILEAFWAAAREGRLVFPRCTACGRYQWYPQAMCPACRAMAFEWDEVRREGYVFSHTTLRRSFVPGEDGEQARHIVLVKFVHVPGVTLVTNVRG----DMAPRVDLRARIAFD--QVAPGVSLPVS 138          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: A0A7W3QS73_ACTNM (Uncharacterized protein n=2 Tax=Actinomadura TaxID=1988 RepID=A0A7W3QS73_ACTNM)

HSP 1 Score: 117 bits (292), Expect = 7.420e-31
Identity = 62/132 (46.97%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    7 VPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDV-VGATSIGAEVDIEIVEVAAGVHLPF 399
            +P+   P+   FW A     LAFP C  C RF WYP+P CP C      WT V PAGT+F+++VV  AFLPAFAD++P  AA+V ID APGVRLVT +      D+ VGA      V +    VA  V  PF
Sbjct:    8 LPDPGEPLTGGFWRAAARDRLAFPLCGACDRFCWYPEPGCPGCGGSDLVWTSVEPAGTLFSWSVVHHAFLPAFADQVPFVAAVVTIDGAPGVRLVTRLIDARPCDLAVGARVRARFVPLRFSTVAGEVRAPF 139          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: A0A8J3W2V0_9ACTN (Uncharacterized protein n=1 Tax=Planobispora longispora TaxID=28887 RepID=A0A8J3W2V0_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 4.250e-30
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    7 VPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVF 303
            +P+ + P+   FW A     LAFP+C +C RF WYP+P CPAC      WT+VRPAGT+++++VV  AFLPAFA ++P  AA+  ID APGVRLV+ + 
Sbjct:    5 LPDLDEPLTGGFWHAAARDLLAFPQCASCERFCWYPEPRCPACGGPDLPWTEVRPAGTLYSWSVVHHAFLPAFAAQVPFVAAVAAIDSAPGVRLVSRLL 103          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: A0A1Y5TT32_9PROT (Uncharacterized protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TT32_9PROT)

HSP 1 Score: 114 bits (286), Expect = 4.640e-30
Identity = 56/106 (52.83%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   40 FWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVVGATSIGAEVD 357
            F+   R G L FP+C +CGRF WYP   CP CR+    W  VR  GT+F++TVVR AF PAFADRLP    LVE DDAPGVR VTN+   D +    A  IG E++
Sbjct:   14 FYDYARQGELRFPKCESCGRFHWYPMKRCPHCRSEKIGWGQVRRNGTLFSWTVVRHAFDPAFADRLPYMVGLVEFDDAPGVRFVTNLTGADAE----AVHIGMELE 115          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: UPI000DAC3A2A (OB-fold domain-containing protein n=1 Tax=Mycobacterium kyogaense TaxID=2212479 RepID=UPI000DAC3A2A)

HSP 1 Score: 114 bits (284), Expect = 1.170e-29
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    7 VPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVV--GATSIGAEVDIEIVEVAAGVHLPF 399
            +P+  W  L PFWAA     + FP+C  CGRFQWYP+  C  C    F W  + P GT+++FTVVR+AFLP    ++P T   V+ D+APGV L+TN+       +V  G+  + +  D++  +  A V +P+
Sbjct:    8 LPDVSWEPLKPFWAACAQREMRFPQCVRCGRFQWYPRDFCAGCMGEEFIWAAIDPVGTVYSFTVVRRAFLPGSRAKVPFTVLQVQFDEAPGVTLLTNLADESQAPLVRVGSRVVASFTDVDDPKGGAPVTMPW 140          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: A0A7J9VNE5_9ACTN (Uncharacterized protein n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A7J9VNE5_9ACTN)

HSP 1 Score: 107 bits (268), Expect = 3.240e-27
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 PWVPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVVGATSIGAEVDIEIVEVAAGVHLPFAV 405
            P +P+ E  + A FW    +G L  PRCT+CGRF WYP   CP C++  +EWT V     IFT+TV+R+    AF DR+    A++E+DDA GVR+V NVF  D  +V      G  V++       G  +P  V
Sbjct:   16 PVLPDVEGTLAAGFWEGADEGELRLPRCTDCGRFHWYPLHRCPHCQSPRWEWTAVAGRARIFTWTVLRRPLHKAFQDRVGEIVAILELDDASGVRIVANVFGADDLEV------GMPVEVAFAPTPDGRAVPIFV 144          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: UPI00193206A6 (OB-fold domain-containing protein n=1 Tax=Micromonospora sp. STR1s_5 TaxID=2806099 RepID=UPI00193206A6)

HSP 1 Score: 106 bits (265), Expect = 6.960e-27
Identity = 59/129 (45.74%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    7 VPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVVGATSIGAEVDIEIVEVAAGVHL 393
            +PET      PF+AALR G LAFPRC++C RF WYP  MCP CR+    WT +   G +F++TVVR  F  A     P    LVE ++APGVRLVTNV                 VD E  E+A GV L
Sbjct:    5 MPETRPAEFEPFFAALRAGKLAFPRCSDCHRFHWYPMKMCPHCRSAELVWTPMTGHGRLFSWTVVRHPFDSAQGPAPPFVVGLVEFEEAPGVRLVTNV-----------------VDSEASELAIGVDL 116          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: UPI001FF2C1EB (OB-fold domain-containing protein n=2 Tax=unclassified Rhodococcus TaxID=192944 RepID=UPI001FF2C1EB)

HSP 1 Score: 104 bits (260), Expect = 7.230e-26
Identity = 53/104 (50.96%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   10 PETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQD 321
            P T+ P LAPFW  +  G L FPRC  C R+ WYP P CP      FEW+ V   G I++FT V +AFLP+     P T ALVE +DAPGVRLVT++   DG D
Sbjct:   23 PLTDVPELAPFWDGVSRGELVFPRCRACRRWHWYPGPGCPCGHDDEFEWSGVAGRGVIYSFTTVHRAFLPS-GSTAPYTVALVEFEDAPGVRLVTDLIG-DGAD 124          
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Match: UPI001F26176B (OB-fold domain-containing protein n=1 Tax=Amycolatopsis sp. GM8 TaxID=2896530 RepID=UPI001F26176B)

HSP 1 Score: 102 bits (255), Expect = 2.590e-25
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   37 PFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAFEWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNVFTVDGQDVVGATSIGAEVDIEIVEVAAGVHLP 396
            PFW A R+  L  P+C NCG F++ P P C +CR    E  ++  AGT++T+TVVR A +P+ AD +P   A++E DDAPGVR++ N+   D    V A  IG+ V++    V   V +P
Sbjct:   23 PFWLANREQRLTIPKCVNCGTFRFPPGPFCHSCRHQEVEQVEISGAGTVYTYTVVRHAVVPSLADSVPYVIAVLEFDDAPGVRMIANIVESD----VDAVRIGSRVELAWDHVDDEVTVP 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14315.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4DXG2_9PSEU1.380e-3750.00DUF35_N domain-containing protein n=1 Tax=Pseudono... [more]
A0A7G7MBZ5_9PSEU1.590e-3647.76OB-fold domain-containing protein n=2 Tax=unclassi... [more]
A0A7W3QS73_ACTNM7.420e-3146.97Uncharacterized protein n=2 Tax=Actinomadura TaxID... [more]
A0A8J3W2V0_9ACTN4.250e-3050.51Uncharacterized protein n=1 Tax=Planobispora longi... [more]
A0A1Y5TT32_9PROT4.640e-3052.83Uncharacterized protein n=1 Tax=Oceanibacterium hi... [more]
UPI000DAC3A2A1.170e-2939.10OB-fold domain-containing protein n=1 Tax=Mycobact... [more]
A0A7J9VNE5_9ACTN3.240e-2740.74Uncharacterized protein n=1 Tax=Propionibacteriale... [more]
UPI00193206A66.960e-2745.74OB-fold domain-containing protein n=1 Tax=Micromon... [more]
UPI001FF2C1EB7.230e-2650.96OB-fold domain-containing protein n=2 Tax=unclassi... [more]
UPI001F26176B2.590e-2541.67OB-fold domain-containing protein n=1 Tax=Amycolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14315contigP-wetherbeei_contig14315:1287..1706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog547163.BN979_03680
PFAMsDUF35_N,OB_aCoA_assoc
Model size420
Max annot lvl201174|Actinobacteria
KEGG koko:K07068
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-29
EggNOG OGsCOG1545@1|root,COG1545@2|Bacteria,2H1GW@201174|Actinobacteria,2382S@1762|Mycobacteriaceae
DescriptionRubredoxin-like zinc ribbon domain (DUF35_N)
Cds size420
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.6216195-CDS-P-wetherbeei_contig14315:1286..17061683186017.6216195-CDS-P-wetherbeei_contig14315:1286..1706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14315 1287..1706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14315.2.1prot_P-wetherbeei_contig14315.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14315 1287..1706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14315.2.1

>prot_P-wetherbeei_contig14315.2.1 ID=prot_P-wetherbeei_contig14315.2.1|Name=mRNA_P-wetherbeei_contig14315.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
PWVPETEWPVLAPFWAALRDGTLAFPRCTNCGRFQWYPQPMCPACRAMAF
EWTDVRPAGTIFTFTVVRKAFLPAFADRLPMTAALVEIDDAPGVRLVTNV
FTVDGQDVVGATSIGAEVDIEIVEVAAGVHLPFAVQRRT*
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mRNA from alignment at P-wetherbeei_contig14315:1287..1706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14315.2.1 ID=mRNA_P-wetherbeei_contig14315.2.1|Name=mRNA_P-wetherbeei_contig14315.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig14315:1287..1706+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTGGGTTCCCGAGACGGAGTGGCCGGTGCTCGCTCCGTTCTGGGCAGC ACTGCGCGACGGGACGCTCGCCTTCCCGAGGTGCACGAACTGCGGGCGCT TCCAGTGGTACCCGCAACCGATGTGCCCCGCGTGCCGGGCCATGGCCTTC GAGTGGACCGACGTGAGGCCCGCGGGCACGATCTTCACCTTTACCGTCGT GCGCAAGGCCTTCCTGCCCGCGTTCGCCGATCGGCTGCCGATGACGGCGG CGCTGGTGGAGATCGATGACGCTCCTGGGGTTCGGCTGGTCACCAACGTG TTCACCGTCGACGGCCAGGATGTGGTGGGCGCGACGTCGATCGGCGCCGA GGTCGACATCGAGATCGTCGAGGTGGCGGCGGGAGTCCACCTGCCCTTCG CGGTGCAGCGTCGGACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14315:1287..1706+

>mRNA_P-wetherbeei_contig14315.2.1 ID=mRNA_P-wetherbeei_contig14315.2.1|Name=mRNA_P-wetherbeei_contig14315.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig14315:1287..1706+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTGGGTTCCCGAGACGGAGTGGCCGGTGCTCGCTCCGTTCTGGGCAGC
ACTGCGCGACGGGACGCTCGCCTTCCCGAGGTGCACGAACTGCGGGCGCT
TCCAGTGGTACCCGCAACCGATGTGCCCCGCGTGCCGGGCCATGGCCTTC
GAGTGGACCGACGTGAGGCCCGCGGGCACGATCTTCACCTTTACCGTCGT
GCGCAAGGCCTTCCTGCCCGCGTTCGCCGATCGGCTGCCGATGACGGCGG
CGCTGGTGGAGATCGATGACGCTCCTGGGGTTCGGCTGGTCACCAACGTG
TTCACCGTCGACGGCCAGGATGTGGTGGGCGCGACGTCGATCGGCGCCGA
GGTCGACATCGAGATCGTCGAGGTGGCGGCGGGAGTCCACCTGCCCTTCG
CGGTGCAGCGTCGGACGTGA
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