mRNA_P-wetherbeei_contig14307.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14307.2.1
Unique NamemRNA_P-wetherbeei_contig14307.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14307.2.1 vs. uniprot
Match: A0A2W2BJC9_9HYPH (Uncharacterized protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BJC9_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 1.190e-8
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   10 MSPLQHLLLKAMRYASLGAAILLLGFLVLTLWQKSGADFTTQDYGFMGIVALMLLGAIWLFRAIGREMDNPGA 228
            MSPL  +L+K +R+ +L  A  L   LVL  W K G +      GF  +VAL+  GA+WL RAIGRE+   G+
Sbjct:    1 MSPLAIVLMKLLRWGALAIAGFLALVLVLEAW-KHGWELGALSKGFTAVVALLAAGALWLARAIGRELAKHGS 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14307.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2W2BJC9_9HYPH1.190e-843.84Uncharacterized protein n=1 Tax=Aestuariivirga lit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14307contigP-wetherbeei_contig14307:1367..1597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size231
Hectar predicted targeting categorysignal peptide
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.313477-CDS-P-wetherbeei_contig14307:1366..15971683186017.313477-CDS-P-wetherbeei_contig14307:1366..1597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14307 1367..1597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14307.2.1prot_P-wetherbeei_contig14307.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14307 1367..1597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14307.2.1

>prot_P-wetherbeei_contig14307.2.1 ID=prot_P-wetherbeei_contig14307.2.1|Name=mRNA_P-wetherbeei_contig14307.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
MSDMSPLQHLLLKAMRYASLGAAILLLGFLVLTLWQKSGADFTTQDYGFM
GIVALMLLGAIWLFRAIGREMDNPGA*
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mRNA from alignment at P-wetherbeei_contig14307:1367..1597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14307.2.1 ID=mRNA_P-wetherbeei_contig14307.2.1|Name=mRNA_P-wetherbeei_contig14307.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig14307:1367..1597- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACATGTCTCCCCTGCAACACCTGCTGCTGAAGGCCATGCGTTA
CGCCAGCCTCGGCGCGGCGATCCTGCTTTTGGGTTTCCTGGTTCTGACAC
TGTGGCAAAAGTCCGGCGCTGACTTTACAACGCAGGACTACGGTTTCATG
GGGATAGTGGCTTTGATGCTTCTGGGCGCGATATGGCTGTTCCGCGCCAT
CGGCCGGGAAATGGATAATCCGGGGGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14307:1367..1597-

>mRNA_P-wetherbeei_contig14307.2.1 ID=mRNA_P-wetherbeei_contig14307.2.1|Name=mRNA_P-wetherbeei_contig14307.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig14307:1367..1597- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACATGTCTCCCCTGCAACACCTGCTGCTGAAGGCCATGCGTTA
CGCCAGCCTCGGCGCGGCGATCCTGCTTTTGGGTTTCCTGGTTCTGACAC
TGTGGCAAAAGTCCGGCGCTGACTTTACAACGCAGGACTACGGTTTCATG
GGGATAGTGGCTTTGATGCTTCTGGGCGCGATATGGCTGTTCCGCGCCAT
CGGCCGGGAAATGGATAATCCGGGGGCTTGA
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