mRNA_P-wetherbeei_contig1430.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1430.2.1
Unique NamemRNA_P-wetherbeei_contig1430.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A835YHG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.410e-30
Identity = 66/124 (53.23%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  282 VLRAKEEESGEASTTETEVIATEKPKSAS----PADLGLDSRGVVSSDKGSIEAYPIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEEDE 641
            +LRA+  +   A+ ++   +A EK +       P D+ L +  + + D+   ++YPID PAY LL LSTVVAIAFVG IFE   P+P+LGYVPTY +G LSLPGF+FLFYAAIKKGQAE+EED+
Sbjct:    9 LLRAESGDEDAAAASQPVSVAEEKKEETKQEVVPMDMSLPTINLDAKDQD--KSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDD 130          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: D8LJZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.000e-19
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  348 EKPKSASPADLGLDSRGVVSSDKGSIEA-------------YPIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEEDE 641
            E  KSA P DL   S G++    G+ +A             YPI LP+Y LL L+TVV+IAF G IFE     P LGY  TY +G LSLP F+FLFYAAIKKG+AE EED+
Sbjct:   77 EPAKSAVPEDLDYYS-GLIGEQPGADKAPASGKEEAVTTSDYPIPLPSYLLLVLATVVSIAFTGSIFEVTGGHPELGYTATYIIGTLSLPTFIFLFYAAIKKGKAEVEEDD 186          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A7S1EUA5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUA5_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 1.850e-12
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  435 PIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEE 635
            PI+LP+Y LL  S+ +AIA +GCIFE  S TP  G   T A+ + S P F FLFYAA++KG+AESEE
Sbjct:   64 PINLPSYVLLLSSSFLAIASIGCIFELASGTPQYGTTTTSAILLFSFPSFAFLFYAALQKGKAESEE 130          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A7S2P364_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P364_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.390e-12
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  411 DKGSIEAYPIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEEDEGY*GDFPSTPKSL 680
            ++  ++AYPIDLP+  LL  S V+AI+ +G +FE    TP LG+  T A+  L LP  +FL YAAI KG AE+EE +    +F + P+ L
Sbjct:   34 EEEELQAYPIDLPSPILLATSMVLAISSIGSLFELAGGTPKLGFAVTAAITALGLPISVFLIYAAILKGSAETEEADR---EFMNKPRRL 120          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A7S2XVJ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-11
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  411 DKGSIEAYP-IDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEED 638
            ++G +   P + LPAY  L +S VVAIAF+G IFE     P+LG+  T+A+ V S PGFL+LFY ++K+GQ E +ED
Sbjct:  115 EEGGLPMIPMLPLPAYLYLVVSCVVAIAFIGTIFEVSGGKPLLGFPLTWAIMVASGPGFLYLFYCSLKRGQIEEKED 191          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A7S0BKC5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKC5_9RHOD)

HSP 1 Score: 70.5 bits (171), Expect = 1.150e-11
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  402 VSSDKGSIEAYPIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEE 635
            +S D GS    P++LP+ ALLGL++++AI+ +GCIFE  S  P  G   T  +   S PGFLF +YAAIKKGQ E+++
Sbjct:   48 LSMDSGSSPP-PVNLPSSALLGLASILAISTIGCIFEISSGQPQYGTPITVGILAFSAPGFLFSYYAAIKKGQYEADQ 124          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A7S4JDB9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JDB9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.470e-10
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  432 YPIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEEDE 641
            YP+++P+  LLG S ++AIA +G IFE     P  G  PT A+  + LP  LFLFYAAI KG AE+EED+
Sbjct:   90 YPLNVPSPLLLGSSMILAIASIGSIFELSGGNPSNGVGPTAAIAAIGLPTCLFLFYAAIMKGIAETEEDD 159          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A2V3IZS2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZS2_9FLOR)

HSP 1 Score: 67.4 bits (163), Expect = 1.640e-10
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  435 PIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEED 638
            PI+ P+  LL  S+V+AIA +GC+FE     P  G+  T  +  +SLP FLFLFYAAIKKGQ E+ ED
Sbjct:   58 PINAPSGVLLLSSSVLAIAAIGCVFELTGGHPTYGFNVTAGILTVSLPSFLFLFYAAIKKGQIEALED 125          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: A0A7S2C8R0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C8R0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.330e-9
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  444 LPAYALLGLSTVVAIAFVGCIFEAF---SPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAESEEDE 641
            +P+Y  LG S ++AIAFVGCIF+ F    P P  G   T  + V S P ++FLF AAIKKGQ E+EED+
Sbjct:  107 VPSYGFLGSSVLLAIAFVGCIFQLFYDKPPAPYFGVPITSIIFVFSGPTWIFLFIAAIKKGQKEAEEDD 175          
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Match: M2XU10_GALSU (Uncharacterized protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XU10_GALSU)

HSP 1 Score: 65.1 bits (157), Expect = 2.010e-9
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  435 PIDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFLFLFYAAIKKGQAES 629
            P+++P+  LLG+S V+AIAFVG IFE  S  P  G   T  + V SLP FLFLFYAAI+KG+ ES
Sbjct:   81 PLNVPSGILLGVSCVLAIAFVGSIFELSSGHPQYGRELTSVILVSSLPSFLFLFYAAIQKGKDES 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1430.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835YHG1_9STRA1.410e-3053.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LJZ9_ECTSI2.000e-1951.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1EUA5_9RHOD1.850e-1256.72Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2P364_9STRA5.390e-1244.44Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2XVJ4_9STRA1.120e-1149.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0BKC5_9RHOD1.150e-1148.72Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S4JDB9_9STRA1.470e-1051.43Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2V3IZS2_9FLOR1.640e-1052.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2C8R0_9STRA1.330e-952.17Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
M2XU10_GALSU2.010e-956.92Uncharacterized protein n=2 Tax=Galdieria sulphura... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1430contigP-wetherbeei_contig1430:5604..6593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJZ9
Model size829
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.27e-21
EggNOG OGs2E3K4@1|root,2SY8W@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007620.1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.0990245-UTR-P-wetherbeei_contig1430:5603..57821683186017.0990245-UTR-P-wetherbeei_contig1430:5603..5782Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1430 5604..5782 -
1683186017.1214457-UTR-P-wetherbeei_contig1430:6456..65931683186017.1214457-UTR-P-wetherbeei_contig1430:6456..6593Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1430 6457..6593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.1069212-CDS-P-wetherbeei_contig1430:5782..58991683186017.1069212-CDS-P-wetherbeei_contig1430:5782..5899Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1430 5783..5899 -
1683186017.1141403-CDS-P-wetherbeei_contig1430:6060..64561683186017.1141403-CDS-P-wetherbeei_contig1430:6060..6456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1430 6061..6456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1430.2.1prot_P-wetherbeei_contig1430.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1430 5783..6456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1430.2.1

>prot_P-wetherbeei_contig1430.2.1 ID=prot_P-wetherbeei_contig1430.2.1|Name=mRNA_P-wetherbeei_contig1430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MQPLTAILFLVAAAVGMSLRVAPLANCRARLCRPRAAVGSFLGRPQRLVL
RAKEEESGEASTTETEVIATEKPKSASPADLGLDSRGVVSSDKGSIEAYP
IDLPAYALLGLSTVVAIAFVGCIFEAFSPTPVLGYVPTYAVGVLSLPGFL
FLFYAAIKKGQAESEEDEGY*
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mRNA from alignment at P-wetherbeei_contig1430:5604..6593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1430.2.1 ID=mRNA_P-wetherbeei_contig1430.2.1|Name=mRNA_P-wetherbeei_contig1430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig1430:5604..6593- (Phaeothamnion wetherbeei SAG_119_79)
ACTGTTCTGAGGTGTTTCTACGTCGTGTTCCTCCCACAGCAAAGCCTCCG AGTCTTCGTGGTAACAAATCCGTCGCATTTCCCCTGTTGACGCCGATAAA CTGGAGCTTTTGCCCTGTCACGTTCTCGTCAAGGATCATGCAACCCCTCA CCGCGATCCTCTTCCTGGTGGCGGCGGCGGTTGGAATGAGTCTCAGAGTG GCTCCATTGGCGAACTGCCGCGCCCGGCTTTGCAGGCCCCGTGCCGCTGT TGGGAGTTTCCTGGGGAGGCCTCAGAGACTCGTGCTCAGAGCTAAAGAGG AGGAAAGCGGAGAGGCAAGCACTACCGAAACTGAAGTCATCGCAACTGAG AAGCCAAAATCGGCATCGCCCGCGGATTTGGGGCTCGATTCCCGCGGCGT GGTTTCGTCTGACAAGGGGAGCATAGAAGCGTATCCGATAGATCTGCCCG CATACGCGCTTCTGGGGCTTTCAACAGTCGTCGCCATCGCTTTCGTCGGA TGCATCTTCGAGGCGTTCAGCCCAACTCCTGTGGTGAGTGATGTATGCCT GAATAACGACTGAGTCGGCAACCGAGACAGCATCGGCAGCACAAGTCGTT TTATCCCTTCTTCCTTCGCCTAGCAGAAGCTGAACTGTTTCTAAAGCCTG CTGTCACGTTTCCAACCCGTCCCTCTTCCGGTCTTTCTCTGCAGCTTGGC TACGTGCCGACGTACGCCGTCGGTGTGCTGTCGCTGCCGGGGTTTCTGTT TCTCTTCTACGCCGCCATCAAGAAGGGACAAGCCGAGAGCGAAGAGGATG AGGGGTACTAAGGAGATTTTCCGTCTACTCCGAAAAGTTTAGATGTACGA GAGTCGCGAGCCCGTACTGTACTGTCGTCATGTGCCCGCACGAGAAAAGT AGAATGGAGATAGATCAAATAAATCAAACACACACGTAAATGCCCAATGC TATCGTTCGGCAACTTCCATCTGAGCCCATTTCTCAGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1430:5604..6593-

>mRNA_P-wetherbeei_contig1430.2.1 ID=mRNA_P-wetherbeei_contig1430.2.1|Name=mRNA_P-wetherbeei_contig1430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig1430:5604..6593- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACCCCTCACCGCGATCCTCTTCCTGGTGGCGGCGGCGGTTGGAAT
GAGTCTCAGAGTGGCTCCATTGGCGAACTGCCGCGCCCGGCTTTGCAGGC
CCCGTGCCGCTGTTGGGAGTTTCCTGGGGAGGCCTCAGAGACTCGTGCTC
AGAGCTAAAGAGGAGGAAAGCGGAGAGGCAAGCACTACCGAAACTGAAGT
CATCGCAACTGAGAAGCCAAAATCGGCATCGCCCGCGGATTTGGGGCTCG
ATTCCCGCGGCGTGGTTTCGTCTGACAAGGGGAGCATAGAAGCGTATCCG
ATAGATCTGCCCGCATACGCGCTTCTGGGGCTTTCAACAGTCGTCGCCAT
CGCTTTCGTCGGATGCATCTTCGAGGCGTTCAGCCCAACTCCTGTGCTTG
GCTACGTGCCGACGTACGCCGTCGGTGTGCTGTCGCTGCCGGGGTTTCTG
TTTCTCTTCTACGCCGCCATCAAGAAGGGACAAGCCGAGAGCGAAGAGGA
TGAGGGGTACTAA
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