mRNA_P-wetherbeei_contig14293.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14293.1.1
Unique NamemRNA_P-wetherbeei_contig14293.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.270e-19
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   16 LTFDEKRQLSDDINKLTPDKLTRVVQIIQERMPLGSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            LTF+EKRQLS +IN+L  +KLTRVVQIIQERMPLG++ E EIEIDIDSMDT TLR+LQ YV
Sbjct:  632 LTFEEKRQLSVNINRLPAEKLTRVVQIIQERMPLGAQDESEIEIDIDSMDTGTLRELQIYV 692          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.660e-16
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 APQEPLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMPLGSRGEEEIEIDIDSMDTPTLRDLQRYVGD 204
            A Q PLTFDEK+ LS  IN L    LTRVV+IIQ RMPLGS  +EEIE+DIDSMD  TLRDLQ ++ D
Sbjct: 1058 ATQNPLTFDEKKALSVAINNLDQSNLTRVVEIIQARMPLGS-SDEEIELDIDSMDNLTLRDLQGFIKD 1124          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: A0A7S2XZ98_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ98_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.050e-16
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    4 PQEPLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMPLGSRG--EEEIEIDIDSMDTPTLRDLQRYV 198
            P++ ++F +KR LS  INKL P KLT+VVQIIQE MPLG +G  +EE+EIDID++D PTLR L  YV
Sbjct:  196 PEKKMSFQDKRNLSLRINKLPPKKLTKVVQIIQESMPLGQKGSEDEEVEIDIDALDEPTLRRLDEYV 262          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: A0A8J2STY6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STY6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.800e-16
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   13 PLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMPL-GSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            PLTFDEK  LSDDIN L PDKL  VV+I+QE MPL G   ++EIE+DI+++D  TLR LQ+YV
Sbjct:  508 PLTFDEKEALSDDINALPPDKLAHVVKIVQESMPLRGRHDDDEIEVDIETLDNDTLRHLQKYV 570          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: F0YNJ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNJ8_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 4.920e-14
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 LTFDEKRQLSDDINKLTPDKLTRVVQIIQERMPL-GSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            LTFDEK  LS+DIN L P+KL  VV+I+QE MPL G   ++EIE+DI+++D  TLR LQ+YV
Sbjct:  190 LTFDEKEALSNDINDLPPEKLAHVVKIVQESMPLTGRHDDDEIEVDIETLDNDTLRHLQKYV 251          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: UPI0005212D6F (bromodomain-containing protein 2-like n=3 Tax=Neognathae TaxID=8825 RepID=UPI0005212D6F)

HSP 1 Score: 68.6 bits (166), Expect = 2.330e-13
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   13 PLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMP-LGSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            P+T+DEKRQLS DINKL  +KL RVV IIQ R P L     EEIEID +++   TLR+L+RYV
Sbjct:   27 PMTYDEKRQLSLDINKLPGEKLGRVVHIIQSREPSLRDSNPEEIEIDFETLKPSTLRELERYV 89          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: UPI001B86617D (bromodomain-containing protein 2-like n=1 Tax=Pyrgilauda ruficollis TaxID=221976 RepID=UPI001B86617D)

HSP 1 Score: 67.4 bits (163), Expect = 4.350e-13
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   13 PLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMP-LGSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            P+++DEKRQLS DINKL  +KL RVV IIQ R P L     EEIEID +++   TLR+L+RYV
Sbjct:   29 PMSYDEKRQLSLDINKLPGEKLGRVVHIIQSREPSLRDSNPEEIEIDFETLKASTLRELERYV 91          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: B3RN78_TRIAD (Uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RN78_TRIAD)

HSP 1 Score: 71.6 bits (174), Expect = 5.350e-13
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   10 EPLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMP-LGSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            EP+T+DEKRQLS DINKL  DKL RVV IIQ R P L     EEIEID +++   TLR+L+RYV
Sbjct:  309 EPMTYDEKRQLSLDINKLPGDKLGRVVHIIQSREPALRESNPEEIEIDFETLKPSTLRELERYV 372          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: UPI001B809146 (bromodomain-containing protein 2-like n=1 Tax=Onychostruthus taczanowskii TaxID=356909 RepID=UPI001B809146)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-12
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   13 PLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMP-LGSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            P+++DEKRQLS DINKL  +KL RVV IIQ R P L     EEIEID +++   TLR+L+RYV
Sbjct:   54 PMSYDEKRQLSLDINKLPGEKLGRVVHIIQSREPSLRDSNPEEIEIDFETLKASTLRELERYV 116          
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Match: A0A401QI20_SCYTO (NET domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI20_SCYTO)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-12
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   10 EPLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMP-LGSRGEEEIEIDIDSMDTPTLRDLQRYV 198
            +P+++DEKRQLS DINKL  +KL RVV IIQ R P L     +EIEID +++   TLR+L+RYV
Sbjct:   22 QPMSYDEKRQLSLDINKLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPTTLRELERYV 85          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14293.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDK9_9STRA1.270e-1977.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LRH3_ECTSI1.660e-1666.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XZ98_9STRA3.050e-1661.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2STY6_9STRA7.800e-1663.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YNJ8_AURAN4.920e-1459.68Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI0005212D6F2.330e-1360.32bromodomain-containing protein 2-like n=3 Tax=Neog... [more]
UPI001B86617D4.350e-1358.73bromodomain-containing protein 2-like n=1 Tax=Pyrg... [more]
B3RN78_TRIAD5.350e-1362.50Uncharacterized protein (Fragment) n=1 Tax=Trichop... [more]
UPI001B8091461.060e-1258.73bromodomain-containing protein 2-like n=1 Tax=Onyc... [more]
A0A401QI20_SCYTO1.300e-1256.25NET domain-containing protein (Fragment) n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14293contigP-wetherbeei_contig14293:263..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRH3
PFAMsBET,Bromodomain
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K11684
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.72e-17
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size204
COG categoryBK
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186016.5501423-CDS-P-wetherbeei_contig14293:262..4221683186016.5501423-CDS-P-wetherbeei_contig14293:262..422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14293 263..422 -
1683186016.5587335-CDS-P-wetherbeei_contig14293:641..6851683186016.5587335-CDS-P-wetherbeei_contig14293:641..685Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14293 642..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14293.1.1prot_P-wetherbeei_contig14293.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14293 263..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14293.1.1

>prot_P-wetherbeei_contig14293.1.1 ID=prot_P-wetherbeei_contig14293.1.1|Name=mRNA_P-wetherbeei_contig14293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
APQEPLTFDEKRQLSDDINKLTPDKLTRVVQIIQERMPLGSRGEEEIEID
IDSMDTPTLRDLQRYVGD
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mRNA from alignment at P-wetherbeei_contig14293:263..685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14293.1.1 ID=mRNA_P-wetherbeei_contig14293.1.1|Name=mRNA_P-wetherbeei_contig14293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig14293:263..685- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCACAAGAACCGCTCACCTTCGACGAGAAGCGCCAACTGAGGTACGA AATGCCGGCTGTTTCAGAATTTCGGTTGAGGTGAATGGAGTCTGCGTGGA CGTCCTATTTCTGTCTTTCGTTTGTAATGATATGGCGGGCGGCGGGCATT TTCTTGTTTCCTCTGTGCCGCCAGCTGTTCTGCAAAATCGATTGAACTTA CTCACGCTCCCTTCTGTCTCAGTGCCGCAATGCCTTCCCTCCTTCCTTTT TTGCCGTTCGCAGTGATGACATCAACAAGCTGACGCCGGACAAGCTGACG CGGGTGGTGCAGATCATCCAGGAACGCATGCCGCTGGGCAGCCGTGGCGA GGAAGAGATCGAGATCGACATTGACTCGATGGACACGCCGACGCTGCGCG ACTTGCAGCGCTACGTCGGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14293:263..685-

>mRNA_P-wetherbeei_contig14293.1.1 ID=mRNA_P-wetherbeei_contig14293.1.1|Name=mRNA_P-wetherbeei_contig14293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig14293:263..685- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCACAAGAACCGCTCACCTTCGACGAGAAGCGCCAACTGAGTGATGA
CATCAACAAGCTGACGCCGGACAAGCTGACGCGGGTGGTGCAGATCATCC
AGGAACGCATGCCGCTGGGCAGCCGTGGCGAGGAAGAGATCGAGATCGAC
ATTGACTCGATGGACACGCCGACGCTGCGCGACTTGCAGCGCTACGTCGG
CGAC
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