mRNA_P-wetherbeei_contig1429.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1429.2.1
Unique NamemRNA_P-wetherbeei_contig1429.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1429.2.1 vs. uniprot
Match: D8LR01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR01_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.780e-15
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  325 VDQLYQDCDGVTMPDGLYYDPDSTIDGAWDDTTRSSIKIAVGRCGCNAAARTAAMGGV 498
            +D  Y DCDGVT PDGLY+DPD+ I+G W D  ++ IKIA  RCGC+AA R A + G+
Sbjct:    1 MDNFYADCDGVTTPDGLYFDPDNAIEGEWSDKVKAQIKIATERCGCDAANRLAPLRGM 58
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BLAST of mRNA_P-wetherbeei_contig1429.2.1 vs. uniprot
Match: A0A6H5JA51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA51_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.940e-15
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  325 VDQLYQDCDGVTMPDGLYYDPDSTIDGAWDDTTRSSIKIAVGRCGCNAAARTAAMGGV 498
            +D LY  CDGVT PDGLY+DPD+ I+G W D   + IKIA  RCGC+AA R A + G+
Sbjct:    1 MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIEAQIKIATERCGCDAANRLAPLRGM 58
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BLAST of mRNA_P-wetherbeei_contig1429.2.1 vs. uniprot
Match: A0A7S1XWD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWD0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.150e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:  190 PTVSSETCVETAASVKDKTTEWG--NGGSCMGCDP-TLGICPPGCQALVDQLYQDCDGVTMPDGLYYDP---DSTIDGAWDDTTRSSIKIAVGRCGC 462
            P  S+ +C+     + D   E     G SCM C+  T   CP GCQ  +D +Y+ CDGV +PDGLYYDP      I G W +  +  +K+AV +CGC
Sbjct:  106 PGQSARSCIAAVRDIYDHHAENNPLTGESCMSCEGNTQRECPSGCQRRIDTMYKSCDGVVLPDGLYYDPAPRPGYIKGRWSEKVQEQVKMAVEKCGC 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1429.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR01_ECTSI1.780e-1556.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA51_9PHAE9.940e-1556.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XWD0_9STRA5.150e-1440.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1429contigP-wetherbeei_contig1429:6682..7179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000023736
Model size499
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue6.4e-18
EggNOG OGs2CXBZ@1|root,2S4KE@2759|Eukaryota,1MHTN@121069|Pythiales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002280.1
Descriptionfunction. Source PGD
Cds size498
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186016.4275694-CDS-P-wetherbeei_contig1429:6681..71791683186016.4275694-CDS-P-wetherbeei_contig1429:6681..7179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1429 6682..7179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1429.2.1prot_P-wetherbeei_contig1429.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1429 6682..7179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1429.2.1

>prot_P-wetherbeei_contig1429.2.1 ID=prot_P-wetherbeei_contig1429.2.1|Name=mRNA_P-wetherbeei_contig1429.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
PRRFSRSPVRYNLKCQPTYRNENIPIIAQQLFTMPPTRRRTAHGILLIAP
SVLVAAASIDYEKPTVSSETCVETAASVKDKTTEWGNGGSCMGCDPTLGI
CPPGCQALVDQLYQDCDGVTMPDGLYYDPDSTIDGAWDDTTRSSIKIAVG
RCGCNAAARTAAMGGV
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mRNA from alignment at P-wetherbeei_contig1429:6682..7179-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1429.2.1 ID=mRNA_P-wetherbeei_contig1429.2.1|Name=mRNA_P-wetherbeei_contig1429.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig1429:6682..7179- (Phaeothamnion wetherbeei SAG_119_79)
CCACGTCGTTTTAGCCGTTCCCCTGTCCGTTACAACCTGAAATGTCAGCC
CACATACCGCAACGAAAACATCCCCATCATCGCGCAACAGCTTTTCACTA
TGCCGCCTACGCGACGGCGCACGGCGCACGGGATCTTGCTCATCGCACCT
AGCGTTCTCGTCGCCGCTGCGTCCATCGACTATGAGAAGCCGACAGTTAG
CTCGGAGACATGCGTCGAGACCGCGGCCTCCGTGAAAGATAAGACGACCG
AGTGGGGAAACGGCGGGTCCTGTATGGGCTGCGACCCGACGCTCGGAATA
TGTCCACCGGGATGCCAGGCTCTCGTCGACCAATTGTACCAGGACTGCGA
TGGTGTCACGATGCCTGATGGATTGTACTATGACCCGGATAGCACCATAG
ATGGAGCGTGGGACGACACTACGCGGAGCAGCATCAAGATCGCCGTGGGC
AGGTGCGGCTGCAACGCCGCCGCTCGAACAGCGGCGATGGGTGGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1429:6682..7179-

>mRNA_P-wetherbeei_contig1429.2.1 ID=mRNA_P-wetherbeei_contig1429.2.1|Name=mRNA_P-wetherbeei_contig1429.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig1429:6682..7179- (Phaeothamnion wetherbeei SAG_119_79)
CCACGTCGTTTTAGCCGTTCCCCTGTCCGTTACAACCTGAAATGTCAGCC
CACATACCGCAACGAAAACATCCCCATCATCGCGCAACAGCTTTTCACTA
TGCCGCCTACGCGACGGCGCACGGCGCACGGGATCTTGCTCATCGCACCT
AGCGTTCTCGTCGCCGCTGCGTCCATCGACTATGAGAAGCCGACAGTTAG
CTCGGAGACATGCGTCGAGACCGCGGCCTCCGTGAAAGATAAGACGACCG
AGTGGGGAAACGGCGGGTCCTGTATGGGCTGCGACCCGACGCTCGGAATA
TGTCCACCGGGATGCCAGGCTCTCGTCGACCAATTGTACCAGGACTGCGA
TGGTGTCACGATGCCTGATGGATTGTACTATGACCCGGATAGCACCATAG
ATGGAGCGTGGGACGACACTACGCGGAGCAGCATCAAGATCGCCGTGGGC
AGGTGCGGCTGCAACGCCGCCGCTCGAACAGCGGCGATGGGTGGCGTG
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