mRNA_P-wetherbeei_contig14253.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14253.1.1
Unique NamemRNA_P-wetherbeei_contig14253.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A1F3YCC0_9PROT (Thymidylate kinase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YCC0_9PROT)

HSP 1 Score: 200 bits (509), Expect = 5.130e-63
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 1
Query:   10 RGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY 414
            RG+FIT EGVDGAGKSTH+ W A  LR++G +V+VTREPGG+PLAEKLR LVL EPMD + ETLL+F AR DH++K I PAL  G WVVCDRFTDAT AYQGGGKGV   L+  LA+ VHPDL PD TLVFDCPY
Sbjct:    8 RGRFITLEGVDGAGKSTHIPWIAERLRASGREVVVTREPGGTPLAEKLRALVLAEPMDPLAETLLMFAARADHVRKVILPALERGAWVVCDRFTDATAAYQGGGKGVSGDLLQRLAQSVHPDLTPDQTLVFDCPY 142          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A522VMY1_9PROT (Thymidylate kinase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VMY1_9PROT)

HSP 1 Score: 192 bits (489), Expect = 5.430e-60
Identity = 95/134 (70.90%), Postives = 108/134 (80.60%), Query Frame = 1
Query:   13 GKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY 414
            G+FIT EGVDGAGKSTHVE  A  LR AGH+VLVTREPGG+PLAEKLR L+L + +DA+ ETLL+F AR DH+ + I PAL AG WVVCDRFTDATLAYQGGGKGV  + I  LA++ HP LKPD TLVFDC Y
Sbjct:    8 GRFITLEGVDGAGKSTHVEAIAGRLRGAGHEVLVTREPGGTPLAEKLRALLLADAIDALAETLLMFAARADHVARVIRPALTAGKWVVCDRFTDATLAYQGGGKGVARSAIEQLAQMTHPGLKPDLTLVFDCSY 141          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A0S8B7S8_9PROT (Thymidylate kinase n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B7S8_9PROT)

HSP 1 Score: 192 bits (487), Expect = 9.940e-60
Identity = 94/135 (69.63%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   10 RGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY 414
            RGKFIT EGVDG+GKSTH+ W    L + GH VL TREPGG+PLAE LRELVLH PMD V E LL+F AR DH+++ I PAL AG WVVCDRFTDATLAYQG GKGV   LI  LA+  HP L PD TLVFDCPY
Sbjct:    4 RGKFITLEGVDGSGKSTHLAWVEQLLHARGHDVLRTREPGGTPLAEALRELVLHSPMDGVCEVLLMFAARADHVRQVIRPALEAGRWVVCDRFTDATLAYQGAGKGVPAQLIRGLAEAAHPGLWPDLTLVFDCPY 138          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A1F4E3U1_9PROT (Thymidylate kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4E3U1_9PROT)

HSP 1 Score: 183 bits (465), Expect = 2.390e-56
Identity = 90/138 (65.22%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 SDMRGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY 414
            +D RG  IT EGVDGAGKSTHVE  A  LR+AG +VLVTREPGG+PLAEKLR L+L + +D   ETLL+F AR DH+ + I PAL  G WVVCDRFTDAT+AYQGGGKG+   LI  LA++ HP L+PD TL+FDC Y
Sbjct:    4 ADGRGLLITLEGVDGAGKSTHVEEIAARLRNAGREVLVTREPGGTPLAEKLRALLLADAIDPYPETLLMFAARADHVARVIRPALERGKWVVCDRFTDATIAYQGGGKGIPRPLIDRLAEVAHPGLQPDLTLIFDCSY 141          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A536XR32_9PROT (Thymidylate kinase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XR32_9PROT)

HSP 1 Score: 181 bits (458), Expect = 4.580e-56
Identity = 83/133 (62.41%), Postives = 104/133 (78.20%), Query Frame = 1
Query:   16 KFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY 414
            KF+T EGVDGAGKSTH+E+ A+ +R+ G  V+VTREPGG+ LAEKLR+ +L +PM  + ETLL+F AR DH+++ I PALA+G WV+CDRFTDAT AYQG GKGV   LI  LA+  HP L+P  TL+FDCPY
Sbjct:    2 KFLTLEGVDGAGKSTHIEFIADAVRTKGAHVIVTREPGGTELAEKLRQAILEQPMSPIVETLLIFAARSDHVERVIKPALASGQWVICDRFTDATAAYQGAGKGVSMDLIARLAEAAHPGLQPSRTLIFDCPY 134          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A2V1K442_9BURK (Thymidylate kinase n=2 Tax=Alcaligenaceae TaxID=506 RepID=A0A2V1K442_9BURK)

HSP 1 Score: 182 bits (463), Expect = 6.970e-56
Identity = 88/135 (65.19%), Postives = 105/135 (77.78%), Query Frame = 1
Query:    7 MRGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCP 411
            +RG+FIT EGVDGAGKSTHV+W   +LR AG  V+ TREPGG+PL EKLREL+L E M   TE LL+F AR++HL++ I PALAAG WVVCDRFTDAT AYQGGG+ + T  + AL   VHPDL+PD TL+FD P
Sbjct:   12 LRGRFITLEGVDGAGKSTHVDWIVAQLRDAGLDVISTREPGGTPLGEKLRELLLGEEMTLATEALLMFAARNEHLEQVIRPALAAGHWVVCDRFTDATFAYQGGGRSLGTQRVAALEAWVHPDLQPDLTLLFDVP 146          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A495WGT4_9RHOO (Thymidylate kinase n=4 Tax=Azonexaceae TaxID=2008795 RepID=A0A495WGT4_9RHOO)

HSP 1 Score: 181 bits (460), Expect = 1.250e-55
Identity = 90/135 (66.67%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    7 MRGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCP 411
            MRGKFITFEG+DGAGKS+HVEW A  LR  G  VLVTREPGG+ L EKLREL+L E M   TETLL+F AR +HL +RI PALA G WV+CDRF+DAT AYQGGG+G+D A   AL + VH  L+PD TL+FD P
Sbjct:    1 MRGKFITFEGIDGAGKSSHVEWLAETLRQRGLSVLVTREPGGTALGEKLRELLLSEAMHLETETLLMFAARREHLAQRIEPALARGEWVICDRFSDATWAYQGGGRGLDKAKFLALERWVHEHLQPDLTLLFDLP 135          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A1J5BQY0_9PROT (Thymidylate kinase n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1J5BQY0_9PROT)

HSP 1 Score: 181 bits (459), Expect = 1.720e-55
Identity = 86/135 (63.70%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    7 MRGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCP 411
            M GKFITFEG+DGAGKSTH+  FA  L   G +V+ TREPGG+PL E+LREL+LHE M   TETLL+F AR++HL++ I PAL  G WV+CDRFTDAT AYQGGG+G+D   I  L + VHPDL+PD T+VFD P
Sbjct:    1 MTGKFITFEGIDGAGKSTHLVRFAERLAERGIEVVTTREPGGTPLGERLRELLLHESMSLATETLLMFAARNEHLERLIRPALREGRWVLCDRFTDATFAYQGGGRGLDPGRIATLEEWVHPDLQPDLTVVFDVP 135          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A257DEE0_9BURK (Thymidylate kinase n=1 Tax=Burkholderiales bacterium PBB1 TaxID=2015563 RepID=A0A257DEE0_9BURK)

HSP 1 Score: 179 bits (455), Expect = 6.750e-55
Identity = 88/135 (65.19%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    7 MRGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCP 411
            M G+FITFEG+DGAGKS+H+E  A  LR+AGH VLVTREPGG+PLAE+LRE++LH PMD +TE LLVF AR +H+++ I PALA G  V+CDRFTDAT AYQG G+G D A + AL   VH DL+PD TL FD P
Sbjct:    1 MPGRFITFEGIDGAGKSSHIEPLAARLRAAGHTVLVTREPGGTPLAERLREMLLHTPMDGLTEALLVFAARRNHVQQVIAPALARGDTVLCDRFTDATFAYQGAGRGFDVAQLTALESWVHGDLQPDLTLWFDLP 135          
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Match: A0A536WSM1_9PROT (Thymidylate kinase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WSM1_9PROT)

HSP 1 Score: 179 bits (454), Expect = 9.010e-55
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1
Query:   16 KFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLRELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLAYQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY 414
            KF+T EGVDGAGKSTH+E+ A+ +R+ G  V+VTREPGG+ LAEKLR  +L +PM  + ETLL+F AR DH+++ I PALA+G WV+CDRFTDAT AYQG GKGV   LI  LA+  HP L+P  TL+FDCPY
Sbjct:    2 KFLTLEGVDGAGKSTHIEFIADAVRTKGAHVIVTREPGGTELAEKLRHAILEQPMSPIVETLLIFAARADHVERVIKPALASGQWVICDRFTDATAAYQGAGKGVSMDLIARLAEAAHPGLQPSRTLIFDCPY 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YCC0_9PROT5.130e-6371.11Thymidylate kinase n=1 Tax=Betaproteobacteria bact... [more]
A0A522VMY1_9PROT5.430e-6070.90Thymidylate kinase n=3 Tax=Betaproteobacteria bact... [more]
A0A0S8B7S8_9PROT9.940e-6069.63Thymidylate kinase n=1 Tax=Betaproteobacteria bact... [more]
A0A1F4E3U1_9PROT2.390e-5665.22Thymidylate kinase n=1 Tax=Betaproteobacteria bact... [more]
A0A536XR32_9PROT4.580e-5662.41Thymidylate kinase (Fragment) n=1 Tax=Betaproteoba... [more]
A0A2V1K442_9BURK6.970e-5665.19Thymidylate kinase n=2 Tax=Alcaligenaceae TaxID=50... [more]
A0A495WGT4_9RHOO1.250e-5566.67Thymidylate kinase n=4 Tax=Azonexaceae TaxID=20087... [more]
A0A1J5BQY0_9PROT1.720e-5563.70Thymidylate kinase n=3 Tax=Betaproteobacteria TaxI... [more]
A0A257DEE0_9BURK6.750e-5565.19Thymidylate kinase n=1 Tax=Burkholderiales bacteri... [more]
A0A536WSM1_9PROT9.010e-5562.41Thymidylate kinase n=1 Tax=Betaproteobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14253contigP-wetherbeei_contig14253:1..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1304883.KI912532_gene2513
Preferred nametmk
PFAMsThymidylate_kin
Model size414
Max annot lvl206389|Rhodocyclales
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.41e-55
EggNOG OGsCOG0125@1|root,COG0125@2|Bacteria,1MV9C@1224|Proteobacteria,2VQ24@28216|Betaproteobacteria,2KW0K@206389|Rhodocyclales
EC2.7.4.9
DescriptionPhosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Cds size408
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.1288455-CDS-P-wetherbeei_contig14253:0..4081683186015.1288455-CDS-P-wetherbeei_contig14253:0..408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14253 1..408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.139831-UTR-P-wetherbeei_contig14253:408..4141683186015.139831-UTR-P-wetherbeei_contig14253:408..414Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14253 409..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14253.1.1prot_P-wetherbeei_contig14253.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14253 1..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14253.1.1

>prot_P-wetherbeei_contig14253.1.1 ID=prot_P-wetherbeei_contig14253.1.1|Name=mRNA_P-wetherbeei_contig14253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MRGKFITFEGVDGAGKSTHVEWFANELRSAGHQVLVTREPGGSPLAEKLR
ELVLHEPMDAVTETLLVFTARDDHLKKRIFPALAAGTWVVCDRFTDATLA
YQGGGKGVDTALIGALAKIVHPDLKPDCTLVFDCPY
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mRNA from alignment at P-wetherbeei_contig14253:1..414-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14253.1.1 ID=mRNA_P-wetherbeei_contig14253.1.1|Name=mRNA_P-wetherbeei_contig14253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig14253:1..414- (Phaeothamnion wetherbeei SAG_119_79)
TCCGACATGCGCGGAAAATTCATCACCTTCGAAGGCGTGGACGGCGCCGG CAAGTCCACCCACGTCGAATGGTTCGCCAACGAATTGCGTTCGGCCGGGC ACCAGGTGCTCGTGACCCGCGAGCCGGGCGGGTCGCCGCTGGCCGAAAAG CTGCGCGAACTGGTGCTCCACGAGCCCATGGACGCGGTGACGGAGACCCT GCTGGTGTTCACGGCCCGCGACGATCACCTCAAGAAGAGGATTTTTCCCG CGCTCGCCGCAGGCACCTGGGTGGTATGCGACCGCTTCACCGACGCGACG CTGGCCTATCAGGGTGGAGGCAAGGGGGTCGACACGGCGCTGATCGGCGC ACTGGCGAAGATCGTCCACCCCGACCTGAAACCCGACTGCACGCTGGTTT TCGATTGTCCGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14253:1..414-

>mRNA_P-wetherbeei_contig14253.1.1 ID=mRNA_P-wetherbeei_contig14253.1.1|Name=mRNA_P-wetherbeei_contig14253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig14253:1..414- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGAAAATTCATCACCTTCGAAGGCGTGGACGGCGCCGGCAAGTC
CACCCACGTCGAATGGTTCGCCAACGAATTGCGTTCGGCCGGGCACCAGG
TGCTCGTGACCCGCGAGCCGGGCGGGTCGCCGCTGGCCGAAAAGCTGCGC
GAACTGGTGCTCCACGAGCCCATGGACGCGGTGACGGAGACCCTGCTGGT
GTTCACGGCCCGCGACGATCACCTCAAGAAGAGGATTTTTCCCGCGCTCG
CCGCAGGCACCTGGGTGGTATGCGACCGCTTCACCGACGCGACGCTGGCC
TATCAGGGTGGAGGCAAGGGGGTCGACACGGCGCTGATCGGCGCACTGGC
GAAGATCGTCCACCCCGACCTGAAACCCGACTGCACGCTGGTTTTCGATT
GTCCGTAC
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