mRNA_P-wetherbeei_contig14241.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA) HSP 1 Score: 138 bits (348), Expect = 8.180e-32 Identity = 127/454 (27.97%), Postives = 191/454 (42.07%), Query Frame = 1
Query: 1 RKNFKDWQEESRWNLKVLGLTLPTLEAPTVVGCGRDSCTVRWVCSFAKRPQDTTTLGFNVTWAAAAANASLALRRLSGHAAVNADTGDPHLSAEPATDHALLAAGITDAVRYTLRVGGGGALLPGSLYSFAVALIYGDVAGPPSAFSKAVRTAAVTAPXXXXXXXXXXXXXXXT-----AGRPLSVRLAVPLPADDGGAPLEGIHVMLRSVGEHVPQGWHVIGVYPGGGTVGGGDXXXXXTIGTIGIGRSKLSIDVANLLPGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGASPHLGELAGFHSGGGGGPHVVPLPNVSDPRVYYAVAGSALPGRGFDPFER----EVHGPVVTVDDRAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPF-----------DAAVPLRNAALLRGRVAIVGR 1302
R++ KDWQ E+RW +V+GLTLPTL PT++ GR + T+ W+ F + D+T G+N+TW + R ++G V+ + + + + H L + + + L P Y+F + + YG+ + P SA S+ V T A++AP G LS+ +A P P DDGGA ++G V R V E + W +G +P + G +L+ ++ +LLP Y+F+ N+IG + S T P AG GG G +PL + + + +A EVHGPVVT+ D TVT LE G LPVW HWSP+A+ VTAE + DP PL NAA ++ R+A++ R
Sbjct: 207 RRSQKDWQAETRWKWRVIGLTLPTLSPPTILDVGRRNVTLGWLSGFLVKAGDSTAYGYNITWHRGHS------REVAGWKQVSHEQVEVQHAYDDYHVHDLTYSLVDE-------------LEPDVSYTFRIMVYYGETSSPSSASSRIVHTPALSAPSRMESPPVLWRRPSKQDKGKLTGTKLSI-VASP-PVDDGGADVKGFIVQRRHVQEEMHDDWVTLGSFP--------IHWVDHVVSDDGATEHRLAFELDHLLPNCDYEFRIAAYNKIGVAAPGTGSRLRTNPV-----------SRAGEEVVGGSGHRSMPLHHFRELDEDFHTDSAAEVREHLKALHSSTFFEVHGPVVTLSDLLQTVT---LE-----------------KPGTGLTLPVWVSHWSPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMER 600
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK) HSP 1 Score: 90.9 bits (224), Expect = 1.010e-16 Identity = 79/252 (31.35%), Postives = 98/252 (38.89%), Query Frame = 1
Query: 562 PADDGGAPLEGIHVMLRSVGEHVPQGWHVIGVYPGGGTVGGGDXXXXXTIGTIGIGRSKLSIDVANLLPGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGASPHLGELAGFHSGGGGGPHVV-----PLPNVSDPRVYYAVAGSALPGRGFDPFEREVHGPVVTVDDRAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR 1302
P DDGG P+ G H+M EH W +G + L V +LLPG Y FK + G WSAPS P P P + G +GG G HV P+ + S + + + HGPVVT+ D LE GG + W WSP+AF VTAEAV ADPF A PLRN A+LR R+A+VGR
Sbjct: 11 PEDDGGEPITGYHLMKLHTDEHTHDDWEFLGTF----------------FPNFDPNMGGLCHTVPHLLPGTAYSFKVAARTAAGDGLWSAPSPPARTPLPQ------LEVDPKGKVTGGTG--HVYGRGWDPITHTSFKKDMFEAPLHLETHSSDKKTSYDQHGPVVTLHDHEAR-----LEVRR-------------GGGGPAVAVAAWTCAWSPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGR 220
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A5D6YD54_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD54_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.160e-16 Identity = 139/496 (28.02%), Postives = 183/496 (36.90%), Query Frame = 1
Query: 1 RKNFKDWQEESRWNLKVLGLTLPTLEAPTVVGCGRDSCTVRWVCSFAKRPQDTTTLGFNVTWAAAAANASLALRRLSGHAAVNADTGDPHLSAEPAT--------DHALLAAGIT-------DAVRYTLRVGGGGALLPGSLYSFAVALIYGDVAGPPSAFSKAVRTAAVTAPXXXXXXXXXXXXXXXTAGRPLSVRLAVPLPADDGGAPLEGIHVMLRSV-GEHVPQGWHVIGVYPGGGT----VGGGDXXXXXT-----------IGTIGIGRSKLSIDVANLL-PGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGA------------SPHLGELAGFHSGGGGGPHVVPLPNVSDPRVYYAVA--GS----ALPGRGFDPFEREVHGPVVTVDD---RAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLP---------VWAGHWSPRAFLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR 1302
R+ K WQ++ RW+ V LTLP P VV R + T+R+ + D T G+ V W LA R + GD P + H + +A T D + V G L + Y+F+V + D +G S S+ V+TA + P +G ++R P ADDGG P+ V R V G+ G G T + G T G S V LL PG TY F+ N IG PWS+PS+PV LP A A S +G G G PH VP+ S + VA GS A DP GP V + D R A + +T P VWA H+SPRAF V+AE V A+P DA+ PLRNAA ++ RV +V R
Sbjct: 475 RERLKQWQDDKRWDRHVEALTLPVSLPPVVVNTTRTTATLRFQDLYEPLKHDITAYGYVVRWRNIDDELVLAAARSDRVRDTSEPRGDAESEPPPLSVNEMNVTRRHLMRSALPTTLFGDDFDGKDIEVVVRG---LSAETRYAFSVQIYVDDTSGLESDSSRIVQTAPCSEPGGVRGVPTASELD---SGACATLRWLGP--ADDGGKPVRLFLVSARIVNGDRESSGTAADGAGAAVATAVAALAGSHNATRATEDEKVFALDARFAARHAGGKWRSAAVCTLLVPGSTYLFRVAAMNSIGAGPWSSPSDPVELPPSASHHAQIGVAATSRRSLSASVGSTVVPTLKGRGDPHYVPMRAFSMRELADLVAAHGSEAVIATVAETEDPQRPGGVGPAVLLSDVIERIVVSVASKFKIRSEGETQPELTPDAAASSTTANANPEQQQQLAFDVWASHFSPRAFHVSAEMVRAEPLDASTPLRNAAQVKDRVVLVAR 962
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.370e-15 Identity = 55/138 (39.86%), Postives = 70/138 (50.72%), Query Frame = 1
Query: 895 LAGFHSGGGGGPHVVPLPNVSDPRVYYAVAGSALPGRGFDPFEREVHGPVVTVDDRAGT--VTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR 1302
++GFH+G + LPNV+D V YA PG GFDPFEREVHGP V +DDRA V + + FE+ D VW H+SPR+F V +E V A P DA L N +R R+ +V R
Sbjct: 1 MSGFHAGH----EHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFEDID---------------------VWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQR 113
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 7.550e-11 Identity = 54/123 (43.90%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 940 PLPNVSDPRVYYAVAGSALPGRGFDPF-EREVHGPVVTVDDRAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPFDAAVP-LRNAALLRGRVAIVGR 1302
PLP DP V YA G A P G ER GP VT+D V D GG +PVWAGH+SPR LVTAE + ADP DAA P LRNA+ +RGR+A+V R
Sbjct: 12 PLPTPRDPAVRYADFGGA-PIVGLHAHAERMARGPTVTLDAARERVHVAD-----------DRGPLAIALGGAD--VPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTR 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig14241.1.1 >prot_P-wetherbeei_contig14241.1.1 ID=prot_P-wetherbeei_contig14241.1.1|Name=mRNA_P-wetherbeei_contig14241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=434bp RKNFKDWQEESRWNLKVLGLTLPTLEAPTVVGCGRDSCTVRWVCSFAKRPback to top mRNA from alignment at P-wetherbeei_contig14241:42..1586- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig14241.1.1 ID=mRNA_P-wetherbeei_contig14241.1.1|Name=mRNA_P-wetherbeei_contig14241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1545bp|location=Sequence derived from alignment at P-wetherbeei_contig14241:42..1586- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig14241:42..1586- >mRNA_P-wetherbeei_contig14241.1.1 ID=mRNA_P-wetherbeei_contig14241.1.1|Name=mRNA_P-wetherbeei_contig14241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1302bp|location=Sequence derived from alignment at P-wetherbeei_contig14241:42..1586- (Phaeothamnion wetherbeei SAG_119_79)back to top |