mRNA_P-wetherbeei_contig14236.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14236.3.1
Unique NamemRNA_P-wetherbeei_contig14236.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14236.3.1 vs. uniprot
Match: A0A1Z9U8J5_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9U8J5_9GAMM)

HSP 1 Score: 228 bits (581), Expect = 1.330e-70
Identity = 113/229 (49.34%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    1 VLAPMRVMNELLNTATAAWATELRAPGMGCPLRYSLDAEQFVSLRTLLPHREDTDSPVGANAPTLVMGGTTTAITLCWNLLWRLPGAYRELSGRHVDRATMDELWGATRELIFRIGGGSLIAFVSFASACSSRVDAMLWDGMQDLSLAQTNGRYVWTMNDALFQRMLEMVNRIHLAQQGHYLGCAALYARATPLALAGEESDVSDGARQPTIFAELLRWITAVARAQYF 687
            VL+   VM  +LN+AT  W +E +     C L + L  E++VSLR LLP + D  +PV +NAPTLVMGGT TAI+LCWNL+ R+P AY  L G+ V +A   ++W A+REL+F  G GSL AFVSF SACS   D ++WDG QDL+L + N RYVW MN+++  R  E+  R+  AQ+  Y GCAALY +A PL L  + +  + G  Q ++F+ELLRW+ A+A  QYF
Sbjct:  104 VLSSSAVMLRVLNSATGKWLSEFQGSKPKCLLEFDLPREEYVSLRMLLPLKTDAQNPVESNAPTLVMGGTATAISLCWNLINRIPNAYEALCGKPVSQAEAKKIWAASRELLFTFGAGSLAAFVSFVSACSENTDELIWDGTQDLTLTRVNDRYVWHMNNSMIDRYNEIHGRVINAQKNEYSGCAALYTKAAPLPLNSKWATPASG--QQSVFSELLRWVGAIADKQYF 330
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14236.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Z9U8J5_9GAMM1.330e-7049.34Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14236contigP-wetherbeei_contig14236:1007..1717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size711
Hectar predicted targeting categoryother localisation
Exons1
Cds size699
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.452399-CDS-P-wetherbeei_contig14236:1006..17051683186014.452399-CDS-P-wetherbeei_contig14236:1006..1705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14236 1007..1705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.4632788-UTR-P-wetherbeei_contig14236:1705..17171683186014.4632788-UTR-P-wetherbeei_contig14236:1705..1717Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14236 1706..1717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14236.3.1prot_P-wetherbeei_contig14236.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14236 1007..1705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14236.3.1

>prot_P-wetherbeei_contig14236.3.1 ID=prot_P-wetherbeei_contig14236.3.1|Name=mRNA_P-wetherbeei_contig14236.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MRVMNELLNTATAAWATELRAPGMGCPLRYSLDAEQFVSLRTLLPHREDT
DSPVGANAPTLVMGGTTTAITLCWNLLWRLPGAYRELSGRHVDRATMDEL
WGATRELIFRIGGGSLIAFVSFASACSSRVDAMLWDGMQDLSLAQTNGRY
VWTMNDALFQRMLEMVNRIHLAQQGHYLGCAALYARATPLALAGEESDVS
DGARQPTIFAELLRWITAVARAQYFPVFPARS*
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mRNA from alignment at P-wetherbeei_contig14236:1007..1717-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14236.3.1 ID=mRNA_P-wetherbeei_contig14236.3.1|Name=mRNA_P-wetherbeei_contig14236.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig14236:1007..1717- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGGCACCGATGCGCGTCATGAATGAACTGCTGAATACCGCGACCGC
CGCCTGGGCAACGGAGTTACGCGCGCCGGGCATGGGCTGTCCCTTGCGTT
ATTCCCTGGATGCCGAGCAGTTTGTGTCCTTACGCACCCTGCTGCCCCAT
CGCGAGGACACTGACAGCCCGGTAGGCGCCAATGCACCGACCCTGGTGAT
GGGCGGCACCACCACTGCCATCACCTTGTGCTGGAATTTGCTGTGGCGCC
TGCCTGGTGCCTATCGCGAGTTGAGCGGTCGCCATGTCGACCGCGCCACC
ATGGACGAGCTGTGGGGCGCGACGCGTGAGCTCATCTTCCGCATCGGCGG
CGGCAGTCTCATCGCCTTCGTCAGCTTCGCGAGTGCCTGCAGCAGCCGCG
TCGATGCCATGCTGTGGGACGGTATGCAGGATCTGAGTCTCGCCCAGACT
AATGGCCGCTATGTGTGGACCATGAACGACGCGCTGTTCCAACGCATGCT
GGAAATGGTCAATCGCATTCATCTCGCCCAGCAGGGACACTATCTGGGCT
GTGCCGCGCTCTACGCGCGCGCGACGCCACTGGCCCTGGCCGGCGAAGAG
AGCGACGTTAGTGACGGCGCCCGTCAGCCCACCATCTTCGCCGAGCTGCT
GCGCTGGATTACGGCCGTGGCGCGCGCCCAATACTTTCCGGTGTTTCCTG
CGCGGAGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14236:1007..1717-

>mRNA_P-wetherbeei_contig14236.3.1 ID=mRNA_P-wetherbeei_contig14236.3.1|Name=mRNA_P-wetherbeei_contig14236.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig14236:1007..1717- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTCATGAATGAACTGCTGAATACCGCGACCGCCGCCTGGGCAAC
GGAGTTACGCGCGCCGGGCATGGGCTGTCCCTTGCGTTATTCCCTGGATG
CCGAGCAGTTTGTGTCCTTACGCACCCTGCTGCCCCATCGCGAGGACACT
GACAGCCCGGTAGGCGCCAATGCACCGACCCTGGTGATGGGCGGCACCAC
CACTGCCATCACCTTGTGCTGGAATTTGCTGTGGCGCCTGCCTGGTGCCT
ATCGCGAGTTGAGCGGTCGCCATGTCGACCGCGCCACCATGGACGAGCTG
TGGGGCGCGACGCGTGAGCTCATCTTCCGCATCGGCGGCGGCAGTCTCAT
CGCCTTCGTCAGCTTCGCGAGTGCCTGCAGCAGCCGCGTCGATGCCATGC
TGTGGGACGGTATGCAGGATCTGAGTCTCGCCCAGACTAATGGCCGCTAT
GTGTGGACCATGAACGACGCGCTGTTCCAACGCATGCTGGAAATGGTCAA
TCGCATTCATCTCGCCCAGCAGGGACACTATCTGGGCTGTGCCGCGCTCT
ACGCGCGCGCGACGCCACTGGCCCTGGCCGGCGAAGAGAGCGACGTTAGT
GACGGCGCCCGTCAGCCCACCATCTTCGCCGAGCTGCTGCGCTGGATTAC
GGCCGTGGCGCGCGCCCAATACTTTCCGGTGTTTCCTGCGCGGAGCTAG
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