mRNA_P-wetherbeei_contig14235.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14235.1.1
Unique NamemRNA_P-wetherbeei_contig14235.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: D7FW08_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW08_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.240e-61
Identity = 97/103 (94.17%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVV V+GKDCVVLGVER+ATAKLQDPRTIRKIVK+DSHITLAFAGLTADARVL+DKARLECQSYRLTCEDAPS+
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLVDKARLECQSYRLTCEDAPSI 106
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A6S9E6K7_HETAK (Proteasome subunit alpha type n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E6K7_HETAK)

HSP 1 Score: 187 bits (476), Expect = 5.250e-58
Identity = 89/102 (87.25%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:   13 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            YDRAITVFSPDGHLFQVEYA+EAVKRGSSVVG+RGKDCV+LGVERK+TAKLQD RT+RKI K+D+H+TLAFAGLTADARVL++KARLECQSYRLTCEDAPS+
Sbjct:    3 YDRAITVFSPDGHLFQVEYAMEAVKRGSSVVGIRGKDCVILGVERKSTAKLQDSRTVRKICKVDNHLTLAFAGLTADARVLVNKARLECQSYRLTCEDAPSV 104
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A835Z7L7_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.370e-56
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:   13 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVR  D +V+GVER+ATAKLQDPRTIRKIVK+D+H+TLAFAGLTADARVLIDKARLE QSYRLTCEDAPSL
Sbjct:    5 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRAADMLVVGVERRATAKLQDPRTIRKIVKVDAHLTLAFAGLTADARVLIDKARLEAQSYRLTCEDAPSL 106
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: W7TRL4_9STRA (Proteasome subunit alpha type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRL4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.160e-55
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYAIEAVKRGSS VGVRGK  V+LGVER+ATAKLQDPRTI+KI K+D H+TLAFAGLTADARVL++KARLECQSYRLT EDAP++
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGKSSVILGVERRATAKLQDPRTIKKICKIDEHVTLAFAGLTADARVLVNKARLECQSYRLTYEDAPTV 106
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A024TP35_9STRA (Proteasome subunit alpha type n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TP35_9STRA)

HSP 1 Score: 177 bits (449), Expect = 7.070e-54
Identity = 88/103 (85.44%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYA+EAVKRG+ VVGVRG D VVL VERK TAKLQDPRT+RKI K+D HITLAFAGLTADARVL++KARLECQSYRLT EDAPS+
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGVRGADVVVLAVERKETAKLQDPRTVRKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSV 106
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A3R6Z883_9STRA (Proteasome subunit alpha type n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6Z883_9STRA)

HSP 1 Score: 177 bits (449), Expect = 8.170e-54
Identity = 88/103 (85.44%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYA+EAVKRG+ VVGVRG D VVL VERK TAKLQDPRT+RKI K+D HITLAFAGLTADARVL++KARLECQSYRLT EDAPS+
Sbjct:    8 RYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGVRGADVVVLAVERKETAKLQDPRTVRKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSV 110
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A7S2EX89_TRICV (Proteasome subunit alpha type n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EX89_TRICV)

HSP 1 Score: 177 bits (449), Expect = 8.410e-54
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:   13 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            YDRAITVFSPDGHLFQVEYA+EAV+RGS+ VGVRGKDCVVL VER+A AKLQDPRTIRKIV +D   TLAFAGLTADARVL++KAR+ECQSYRLTCEDAPS+
Sbjct:    3 YDRAITVFSPDGHLFQVEYAMEAVRRGSTAVGVRGKDCVVLAVERRALAKLQDPRTIRKIVPVDERCTLAFAGLTADARVLVNKARVECQSYRLTCEDAPSV 104
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A1V9Z2W8_9STRA (Proteasome subunit alpha type n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z2W8_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.460e-53
Identity = 88/103 (85.44%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYA+EAVK+G+ VVGVRG D VVL VERK TAKLQDPRT+RKI K+D HITLAFAGLTADARVLI+KARLECQSYRLT EDAPS+
Sbjct:    9 RYDRAITVFSPDGHLFQVEYAMEAVKKGAIVVGVRGADVVVLAVERKETAKLQDPRTVRKICKVDDHITLAFAGLTADARVLINKARLECQSYRLTVEDAPSV 111
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: H3GBZ7_PHYRM (Proteasome subunit alpha type n=8 Tax=Peronosporaceae TaxID=4777 RepID=H3GBZ7_PHYRM)

HSP 1 Score: 174 bits (441), Expect = 1.020e-52
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYA+EAVK+G+ VVGVRGK+ VVL VERK TAKLQDPRT+RKI K+D HI++AFAGLTADARVL++KARLECQSYRLT EDAPS+
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGVRGKNSVVLAVERKETAKLQDPRTVRKICKVDDHISIAFAGLTADARVLVNKARLECQSYRLTVEDAPSV 105
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BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Match: A0A3R7X0S1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycotransferase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7X0S1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.120e-52
Identity = 88/103 (85.44%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:   10 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERKATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTCEDAPSL 318
            RYDRAITVFSPDGHLFQVEYA+EAVKRG+ VVGVRG D VVL VERK TAKLQDPRT+RKI K+D HITLAFAGLTADARVL++KARLECQSYRLT EDAPS+
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVKRGAVVVGVRGVDVVVLAVERKETAKLQDPRTVRKICKVDDHITLAFAGLTADARVLVNKARLECQSYRLTVEDAPSV 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14235.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW08_ECTSI1.240e-6194.17Proteasome subunit alpha type n=2 Tax=Ectocarpus T... [more]
A0A6S9E6K7_HETAK5.250e-5887.25Proteasome subunit alpha type n=2 Tax=Heterosigma ... [more]
A0A835Z7L7_9STRA1.370e-5690.20Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
W7TRL4_9STRA3.160e-5585.44Proteasome subunit alpha type n=2 Tax=Monodopsidac... [more]
A0A024TP35_9STRA7.070e-5485.44Proteasome subunit alpha type n=4 Tax=Aphanomyces ... [more]
A0A3R6Z883_9STRA8.170e-5485.44Proteasome subunit alpha type n=3 Tax=Aphanomyces ... [more]
A0A7S2EX89_TRICV8.410e-5484.31Proteasome subunit alpha type n=1 Tax=Trieres chin... [more]
A0A1V9Z2W8_9STRA1.460e-5385.44Proteasome subunit alpha type n=5 Tax=Saprolegniac... [more]
H3GBZ7_PHYRM1.020e-5282.52Proteasome subunit alpha type n=8 Tax=Peronosporac... [more]
A0A3R7X0S1_9STRA1.120e-5285.44Dolichyl-diphosphooligosaccharide--protein glycotr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14235contigP-wetherbeei_contig14235:183..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FW08
Preferred namePSMA7
PFAMsProteasome,Proteasome_A_N
Model size318
Max annot lvl2759|Eukaryota
KEGG koko:K01191,ko:K02731
KEGG Pathwayko00511,ko03050,map00511,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005819,GO:0005829,GO:0005839,GO:0005840,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009524,GO:0009536,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030071,GO:0030163,GO:0031090,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0036211,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044464,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0098588,GO:0098794,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:1990904,GO:2001252
Exons2
Evalue2.04e-62
EggNOG OGsCOG0638@1|root,KOG0183@2759|Eukaryota
EC3.2.1.24,3.4.25.1
Descriptionthreonine-type endopeptidase activity
Cds size318
COG categoryO
CAZyGH38
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.353812-CDS-P-wetherbeei_contig14235:182..3321683186014.353812-CDS-P-wetherbeei_contig14235:182..332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14235 183..332 -
1683186014.3666377-CDS-P-wetherbeei_contig14235:626..7941683186014.3666377-CDS-P-wetherbeei_contig14235:626..794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14235 627..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14235.1.1prot_P-wetherbeei_contig14235.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14235 183..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14235.1.1

>prot_P-wetherbeei_contig14235.1.1 ID=prot_P-wetherbeei_contig14235.1.1|Name=mRNA_P-wetherbeei_contig14235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
SHFRYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRGKDCVVLGVERK
ATAKLQDPRTIRKIVKLDSHITLAFAGLTADARVLIDKARLECQSYRLTC
EDAPSL
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mRNA from alignment at P-wetherbeei_contig14235:183..794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14235.1.1 ID=mRNA_P-wetherbeei_contig14235.1.1|Name=mRNA_P-wetherbeei_contig14235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig14235:183..794- (Phaeothamnion wetherbeei SAG_119_79)
TCTCATTTCAGGTACGACCGTGCTATCACGGTCTTCTCGCCCGATGGGCA
CTTGTTTCAAGTGGAGTACGCCATTGAGGCCGTAAAGCGGGGGTCTTCTG
TTGTGGGCGTCCGCGGAAAAGACTGCGTCGTGCTCGGAGTGGAGCGAAAG
GCCACAGCAAAGTTGCAGGTGAGAGACAAGTGGAACTTTCTTTGAGATGC
ATTTTGAAGACGGTAGCGCAATCCCCTGTCTTTCGTTCCCTGCTGTTTCG
CTACACCGTCAACGTTTGGAAGCTGAAATGCCTTGCAAAAGCTTGGTATT
GCAGCCTGTATGCCAACAAAGCCAGCACGCATCAAAATTCTTATTTGCCT
CCAATCGAACTGCCGTCGTCGCCTTTTGACTTATTCGCCATTGCTGCGGC
GGCCGCTGCGGTTGCTCCCGCCCGCCATCGCCGCTGCCATTGTCACCCTC
TTTCCGTCGCAGGATCCTCGGACGATCCGCAAGATCGTGAAGCTGGACAG
CCATATCACGCTGGCCTTCGCGGGGCTGACGGCGGACGCTCGGGTGCTGA
TCGACAAGGCGCGCCTCGAGTGCCAAAGCTATCGCCTCACCTGCGAGGAC
GCGCCCAGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14235:183..794-

>mRNA_P-wetherbeei_contig14235.1.1 ID=mRNA_P-wetherbeei_contig14235.1.1|Name=mRNA_P-wetherbeei_contig14235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig14235:183..794- (Phaeothamnion wetherbeei SAG_119_79)
TCTCATTTCAGGTACGACCGTGCTATCACGGTCTTCTCGCCCGATGGGCA
CTTGTTTCAAGTGGAGTACGCCATTGAGGCCGTAAAGCGGGGGTCTTCTG
TTGTGGGCGTCCGCGGAAAAGACTGCGTCGTGCTCGGAGTGGAGCGAAAG
GCCACAGCAAAGTTGCAGGATCCTCGGACGATCCGCAAGATCGTGAAGCT
GGACAGCCATATCACGCTGGCCTTCGCGGGGCTGACGGCGGACGCTCGGG
TGCTGATCGACAAGGCGCGCCTCGAGTGCCAAAGCTATCGCCTCACCTGC
GAGGACGCGCCCAGCCTC
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