mRNA_P-wetherbeei_contig14230.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14230.2.1
Unique NamemRNA_P-wetherbeei_contig14230.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A7C2YS85_9PROT (tRNA pseudouridine synthase A n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YS85_9PROT)

HSP 1 Score: 357 bits (917), Expect = 5.800e-122
Identity = 174/250 (69.60%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    4 RIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPA 753
            R+ALG+EY+GA FCGWQTQP GCAVQD LE AL+ +AGE + T+CAGRTDAGVHAL QVVHFD  A RP SAWVRGTN  +P G AV W   V +DF ARYSA+ER YRYVL N  VRPA   GRV W H PLDV RM  AA  L+GEHDFSAFRS+ CQA+SPVRELRRL I R GDYV+FD AANA+LHHMVRNIVG+LVYVG G+H P WL  VL++ +R  AAPT EAAGLYL  V YDA W LPA
Sbjct:   11 RVALGLEYDGAAFCGWQTQPDGCAVQDRLEAALSEVAGEPVTTVCAGRTDAGVHALGQVVHFDTRAARPLSAWVRGTNALLPPGVAVNWGQGVRSDFHARYSARERCYRYVLLNRAVRPAAEHGRVGWFHLPLDVERMRVAARALIGEHDFSAFRSSACQARSPVRELRRLDIERRGDYVLFDFAANAYLHHMVRNIVGALVYVGKGKHPPEWLRAVLENRDRTRAAPTFEAAGLYLTRVVYDAVWALPA 260          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A1F4DRW3_9PROT (tRNA pseudouridine synthase A n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DRW3_9PROT)

HSP 1 Score: 356 bits (914), Expect = 1.210e-121
Identity = 174/256 (67.97%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPALARRA 768
            MRIALGIEY+G+ FCGWQTQP+GCA QD LE AL+ IAGE++AT+CAGRTDAGVHALAQVVHFD  AERP +AWVRG+N  +PS  AVTW   ++  F ARYSA ER YRYVL N PVRPA +  RV W H PL +  + +AA  L+GEHDFSAFRS+ECQA+SPVR LRRL I R GDYVVF+  ANAFLHHMVRNIVG L+YVG G+H PAW+ DVL   +R  AAPT +AAGLYLA V YDA WGLP   R A
Sbjct:    1 MRIALGIEYDGSAFCGWQTQPAGCAAQDKLESALSQIAGERVATVCAGRTDAGVHALAQVVHFDTVAERPVTAWVRGSNALLPSALAVTWAKVMSDQFHARYSAHERCYRYVLLNRPVRPAADRARVGWFHLPLALDNIQSAARLLIGEHDFSAFRSSECQARSPVRHLRRLDIERRGDYVVFEFCANAFLHHMVRNIVGCLIYVGKGKHPPAWVGDVLAGRDRRQAAPTFDAAGLYLARVVYDAAWGLPEAPRAA 256          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A7C3NS72_9PROT (tRNA pseudouridine synthase A n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NS72_9PROT)

HSP 1 Score: 352 bits (903), Expect = 5.330e-120
Identity = 176/259 (67.95%), Postives = 193/259 (74.52%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPALARRAWFE 777
            +RIALG+EY+G+ FCGWQTQP GCAVQDALERAL  IAGE +AT+CAGRTDAGVHAL QVVHFD  A RP SAWVRG N  +P   AVTW   VA DF ARYSAQ R YRYVL NH VRPA +  RV W H PL++  M  AA  LLGEHDFSAFRSAECQA++PVR L RL I R GDYVVFDL ANAFLHHMVRNIVG LV+VG G   P W+ +VL   +R  AAPT  AAGLYLA V YDA+W LPA  R    E
Sbjct:    2 VRIALGVEYDGSRFCGWQTQPDGCAVQDALERALGEIAGEPVATVCAGRTDAGVHALGQVVHFDTAARRPGSAWVRGVNVLLPPACAVTWSQEVAGDFHARYSAQSRGYRYVLLNHAVRPAADHTRVGWFHVPLELEPMRRAARLLLGEHDFSAFRSAECQARTPVRTLSRLDIARRGDYVVFDLRANAFLHHMVRNIVGCLVHVGKGGCPPEWIGEVLAGRDRTRAAPTFPAAGLYLARVDYDARWSLPAAPRSTLLE 260          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A5C7EVA1_9PROT (tRNA pseudouridine synthase A n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A5C7EVA1_9PROT)

HSP 1 Score: 348 bits (893), Expect = 2.330e-118
Identity = 169/250 (67.60%), Postives = 193/250 (77.20%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLP 750
            MRIALG+EY+G+ FCGWQ+Q  GC+VQDALERAL  +AG  +    AGRTDAGVHAL QVVHFD N  RP +AWVRGTN  +PS  AV W  PVA DF AR+SA+ERSYRY+L NHPVRPA   GRV W H PLDVARM AAA +L+GEHDFSAFRS+ECQA++PVR L RL +RR G  VVFDL ANAFLHHMVRNIVG LVYVG G+H P WL +VL   +RA  APT  AAGLY + V Y+ +WGLP
Sbjct:    1 MRIALGLEYDGSRFCGWQSQAEGCSVQDALERALGEVAGHPVRVAAAGRTDAGVHALMQVVHFDTNVTRPETAWVRGTNAHLPSSVAVLWARPVAEDFHARFSARERSYRYLLLNHPVRPAAAHGRVGWFHQPLDVARMQAAARYLVGEHDFSAFRSSECQARTPVRTLSRLEVRRVGALVVFDLWANAFLHHMVRNIVGCLVYVGKGKHPPEWLQEVLQGRDRARGAPTFPAAGLYFSGVRYEPRWGLP 250          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A0S8CB40_9PROT (tRNA pseudouridine synthase A n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8CB40_9PROT)

HSP 1 Score: 347 bits (889), Expect = 7.180e-118
Identity = 169/260 (65.00%), Postives = 196/260 (75.38%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPALARRAWFEE 780
            MRIALG+EY+G+ FCGWQTQP GCAVQD LERAL  IAG  +AT CAGRTDAGVHALAQVVHFD  A RPASAW+RGTN  +P   AVTW+  +A+DF ARYSA  RSYRY+L N PVRPA+   RV W H PLD+ +M  AA  L+GEHDFSAFRS+ECQ++SPVR L+RL + R G YVVFD+ ANAFLHHMVRNIVG LVYVG G+  P WL ++L   +R   APT  AAGLYLA V Y+ +WGL    R A  E+
Sbjct:    1 MRIALGLEYDGSRFCGWQTQPEGCAVQDTLERALREIAGTPVATTCAGRTDAGVHALAQVVHFDTEARRPASAWMRGTNALLPPPLAVTWVREIASDFHARYSALSRSYRYILLNDPVRPAVGHARVGWFHLPLDLEKMCDAARLLIGEHDFSAFRSSECQSRSPVRTLKRLELSRRGSYVVFDVQANAFLHHMVRNIVGCLVYVGKGKFPPEWLGELLSGRDRTRGAPTFPAAGLYLARVEYEPRWGLAESPRAAIMEQ 260          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A1F3ZRV0_9PROT (tRNA pseudouridine synthase A n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZRV0_9PROT)

HSP 1 Score: 345 bits (885), Expect = 3.120e-117
Identity = 172/250 (68.80%), Postives = 194/250 (77.60%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLP 750
            MRIALGIEY+G+ FCGWQTQ +GCAVQD LE ALA IAG  + T+CAGRTDAGVHAL QVVH D  A+RP +AWVRG N   P+  AVTW   V  +F ARYSA+ERSYRYVL N  VRPA ++GRV WCH PLD+ RM  AA+ L+GEHDFSAFRS+ECQA+SPVR L R+ IRRSG+YVVFDL+ANAFLHHMVRNIVG LVYVG GR  P WLA VL   +R  AAPT  A+GLYLA V YD  W LP
Sbjct:    1 MRIALGIEYDGSAFCGWQTQLAGCAVQDKLESALAQIAGSPVGTVCAGRTDAGVHALGQVVHLDPVADRPLNAWVRGVNALTPATLAVTWARAVGDEFHARYSARERSYRYVLLNRAVRPAADQGRVGWCHLPLDLERMRHAASALIGEHDFSAFRSSECQARSPVRNLVRIEIRRSGEYVVFDLSANAFLHHMVRNIVGCLVYVGGGRRPPEWLAAVLAGRDRTGAAPTFSASGLYLARVVYDPVWDLP 250          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A1Y0G4Y6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Sulfuriferula sp. AH1 TaxID=1985873 RepID=A0A1Y0G4Y6_9PROT)

HSP 1 Score: 342 bits (877), Expect = 5.140e-116
Identity = 164/249 (65.86%), Postives = 191/249 (76.71%), Query Frame = 1
Query:    4 RIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLP 750
            RIALG+EYNG+ FCGWQ QP GC VQDALERAL+ IAG  ++ + AGRTD GVHA  Q+VHFD + ERP +AWVRG N  +P G AV W   V  DF AR+SA  RSYRY L NHPVRPALN G+V W HAPLD+ARM  AA  L+GEHDFSAFR+AECQA+SPVR LR+L +   G+ VVF+L ANAFLHHMVRNIVG+LVYVG G++ P W+AD+L   +R  AAPT  AAGL+L HV YDA WGLP
Sbjct:    3 RIALGLEYNGSQFCGWQHQPQGCGVQDALERALSQIAGHAVSVVAAGRTDTGVHATEQIVHFDVSIERPLTAWVRGANAFLPDGVAVLWAQLVGPDFHARFSAISRSYRYDLLNHPVRPALNAGQVGWYHAPLDIARMQQAAALLVGEHDFSAFRAAECQARSPVRVLRQLNVSGQGNLVVFELTANAFLHHMVRNIVGALVYVGQGKYPPDWIADLLQQRDRTRAAPTFAAAGLHLCHVEYDAMWGLP 251          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A4R3JYX5_9PROT (tRNA pseudouridine synthase A n=1 Tax=Sulfuritortus calidifontis TaxID=1914471 RepID=A0A4R3JYX5_9PROT)

HSP 1 Score: 340 bits (872), Expect = 3.640e-115
Identity = 167/255 (65.49%), Postives = 196/255 (76.86%), Query Frame = 1
Query:    4 RIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPALARRA 768
            RIALG+EY+G  FCGWQTQP GCAVQDALE ALA + G  ++TI AGRTDAGVHAL QVVHFD   +RP SAW+RGTN  +P G AV W   V+ +F+ARY+A ER+YRYVL NHPVRPAL  G+V W HAPLD A M  AA HLLGEHDFSAFR+AECQAKSPVR+LR L + R GD+ V +  ANAFLHH VRN+VG+LV+VG GR  PAW+ +VL+S +R+ AA T  A GLYL+ V YD KWGLPA   R+
Sbjct:    4 RIALGLEYDGRLFCGWQTQPGGCAVQDALEAALAEVHGAPVSTIVAGRTDAGVHALNQVVHFDAVNDRPESAWLRGTNALLPPGVAVVWAKQVSEEFNARYAALERAYRYVLLNHPVRPALLAGKVGWVHAPLDQANMVEAAAHLLGEHDFSAFRAAECQAKSPVRQLRELNVVRHGDFFVLEFRANAFLHHQVRNMVGALVWVGLGRRSPAWVKEVLESRDRSQAAATFAADGLYLSAVRYDPKWGLPATVDRS 258          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: UPI00193B6171 (tRNA pseudouridine(38-40) synthase TruA n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193B6171)

HSP 1 Score: 339 bits (869), Expect = 6.870e-115
Identity = 164/252 (65.08%), Postives = 195/252 (77.38%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPAL 756
            M+IAL +EY+G  F GWQTQPSG  VQDALE+AL+ IAGE IA +CAGRTDAGVHA  QVVHF+C AERP SAWVRGTNT +P   AV W  PVA DF AR+SA+ R YRY+L N P RP L  GRV W H PLD+A M AAA  LLGEHDFSAFR+AECQAKSPV+ELR   + ++GD+VVFD  A+AFLHHMVRN+VG+LVY+G G+H PAW+ ++L+  +R  AAPT    GLYL+ +SY+A WGLP L
Sbjct:    1 MKIALCLEYDGRAFHGWQTQPSGNTVQDALEKALSEIAGEPIAVVCAGRTDAGVHASCQVVHFECLAERPLSAWVRGTNTLLPDAVAVRWAQPVADDFHARFSARGRRYRYLLLNRPQRPGLTHGRVGWFHQPLDLAAMQAAAARLLGEHDFSAFRAAECQAKSPVKELREAWVWQAGDHVVFDFEASAFLHHMVRNLVGTLVYIGKGKHSPAWIDELLECRDRKRAAPTFSPDGLYLSGISYEAHWGLPEL 252          
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Match: A0A6L5JV31_RHOTE (tRNA pseudouridine synthase A n=1 Tax=Rhodocyclus tenuis TaxID=1066 RepID=A0A6L5JV31_RHOTE)

HSP 1 Score: 338 bits (867), Expect = 2.250e-114
Identity = 164/253 (64.82%), Postives = 193/253 (76.28%), Query Frame = 1
Query:    1 MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRTDAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSARYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEHDFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVGSLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLPALA 759
            MRIALGIEY+G  FCGWQTQP+G +VQDA++ ALA +AG+ I  +CAGRTDAGVHA AQVVHFD    RP SAWVRGTNT +P    V W  PVA DF AR+ AQ R YRY+L N P RPA+  GR  W HAPLD++ M AAA  LLGEHDFSAFR+AECQA+SP++ LRR  + + GD++VFD AA AFLHHMVRN+VGSLVYVG GR  PAW+ ++L + +R LAAPT  AAGLYL  V YD +WGLP LA
Sbjct:    1 MRIALGIEYDGGGFCGWQTQPAGGSVQDAVQTALAALAGQPIDIVCAGRTDAGVHASAQVVHFDAPVARPVSAWVRGTNTFLPPAVVVRWARPVADDFHARFCAQGRHYRYLLLNRPQRPAIWHGRAGWHHAPLDLSAMQAAACSLLGEHDFSAFRAAECQARSPIKRLRRADVSQQGDFIVFDFAAGAFLHHMVRNMVGSLVYVGLGRQAPAWIDELLAARDRRLAAPTFSAAGLYLVGVDYDPRWGLPPLA 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14230.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2YS85_9PROT5.800e-12269.60tRNA pseudouridine synthase A n=1 Tax=Betaproteoba... [more]
A0A1F4DRW3_9PROT1.210e-12167.97tRNA pseudouridine synthase A n=1 Tax=Betaproteoba... [more]
A0A7C3NS72_9PROT5.330e-12067.95tRNA pseudouridine synthase A n=1 Tax=Betaproteoba... [more]
A0A5C7EVA1_9PROT2.330e-11867.60tRNA pseudouridine synthase A n=2 Tax=Proteobacter... [more]
A0A0S8CB40_9PROT7.180e-11865.00tRNA pseudouridine synthase A n=1 Tax=Betaproteoba... [more]
A0A1F3ZRV0_9PROT3.120e-11768.80tRNA pseudouridine synthase A n=1 Tax=Betaproteoba... [more]
A0A1Y0G4Y6_9PROT5.140e-11665.86tRNA pseudouridine synthase A n=1 Tax=Sulfuriferul... [more]
A0A4R3JYX5_9PROT3.640e-11565.49tRNA pseudouridine synthase A n=1 Tax=Sulfuritortu... [more]
UPI00193B61716.870e-11565.08tRNA pseudouridine(38-40) synthase TruA n=1 Tax=Az... [more]
A0A6L5JV31_RHOTE2.250e-11464.82tRNA pseudouridine synthase A n=1 Tax=Rhodocyclus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14230contigP-wetherbeei_contig14230:623..1408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1485544.JQKP01000003_gene249
Preferred nametruA
PFAMsPseudoU_synth_1
Model size786
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06173
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.98e-115
EggNOG OGsCOG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2VI0R@28216|Betaproteobacteria,44V8K@713636|Nitrosomonadales
EC5.4.99.12
DescriptionFormation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
Cds size786
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.2257726-CDS-P-wetherbeei_contig14230:622..14081683186014.2257726-CDS-P-wetherbeei_contig14230:622..1408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14230 623..1408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14230.2.1prot_P-wetherbeei_contig14230.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14230 623..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14230.2.1

>prot_P-wetherbeei_contig14230.2.1 ID=prot_P-wetherbeei_contig14230.2.1|Name=mRNA_P-wetherbeei_contig14230.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
MRIALGIEYNGATFCGWQTQPSGCAVQDALERALAGIAGEKIATICAGRT
DAGVHALAQVVHFDCNAERPASAWVRGTNTSMPSGAAVTWMHPVAADFSA
RYSAQERSYRYVLFNHPVRPALNEGRVAWCHAPLDVARMSAAATHLLGEH
DFSAFRSAECQAKSPVRELRRLTIRRSGDYVVFDLAANAFLHHMVRNIVG
SLVYVGNGRHEPAWLADVLDSGNRALAAPTLEAAGLYLAHVSYDAKWGLP
ALARRAWFEEI*
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mRNA from alignment at P-wetherbeei_contig14230:623..1408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14230.2.1 ID=mRNA_P-wetherbeei_contig14230.2.1|Name=mRNA_P-wetherbeei_contig14230.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig14230:623..1408+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGATCGCGCTCGGCATCGAGTACAACGGCGCTACGTTTTGCGGCTG GCAGACCCAGCCGTCGGGATGCGCTGTGCAGGACGCGCTCGAGCGCGCAC TGGCCGGGATTGCAGGCGAAAAAATCGCGACCATCTGCGCGGGGCGCACC GATGCCGGCGTGCACGCGCTGGCACAGGTGGTGCATTTCGACTGTAACGC CGAGCGTCCCGCTTCGGCGTGGGTGCGCGGCACCAATACATCAATGCCGT CCGGCGCAGCGGTGACGTGGATGCATCCGGTGGCGGCAGACTTCAGCGCG CGTTATTCCGCGCAGGAGCGCAGCTACCGTTACGTGCTGTTCAACCATCC GGTAAGGCCGGCATTGAACGAGGGACGGGTCGCATGGTGTCACGCGCCGC TCGATGTCGCGCGTATGAGCGCGGCGGCGACGCACCTGCTGGGCGAGCAC GATTTCAGCGCTTTCCGCTCGGCCGAATGCCAGGCCAAGTCCCCGGTGCG CGAATTGCGGCGCCTGACGATACGCCGGAGCGGCGACTATGTCGTGTTCG ACCTTGCAGCCAATGCGTTCCTGCATCACATGGTGCGCAATATCGTCGGT AGTCTCGTCTACGTAGGCAACGGCAGGCATGAGCCGGCGTGGCTGGCGGA TGTGCTGGACAGCGGCAATCGCGCGTTGGCGGCGCCGACGCTGGAGGCGG CGGGGCTCTATCTTGCGCACGTGAGCTATGATGCGAAATGGGGTTTGCCC GCGCTTGCGCGCCGGGCGTGGTTTGAAGAGATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14230:623..1408+

>mRNA_P-wetherbeei_contig14230.2.1 ID=mRNA_P-wetherbeei_contig14230.2.1|Name=mRNA_P-wetherbeei_contig14230.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig14230:623..1408+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGATCGCGCTCGGCATCGAGTACAACGGCGCTACGTTTTGCGGCTG
GCAGACCCAGCCGTCGGGATGCGCTGTGCAGGACGCGCTCGAGCGCGCAC
TGGCCGGGATTGCAGGCGAAAAAATCGCGACCATCTGCGCGGGGCGCACC
GATGCCGGCGTGCACGCGCTGGCACAGGTGGTGCATTTCGACTGTAACGC
CGAGCGTCCCGCTTCGGCGTGGGTGCGCGGCACCAATACATCAATGCCGT
CCGGCGCAGCGGTGACGTGGATGCATCCGGTGGCGGCAGACTTCAGCGCG
CGTTATTCCGCGCAGGAGCGCAGCTACCGTTACGTGCTGTTCAACCATCC
GGTAAGGCCGGCATTGAACGAGGGACGGGTCGCATGGTGTCACGCGCCGC
TCGATGTCGCGCGTATGAGCGCGGCGGCGACGCACCTGCTGGGCGAGCAC
GATTTCAGCGCTTTCCGCTCGGCCGAATGCCAGGCCAAGTCCCCGGTGCG
CGAATTGCGGCGCCTGACGATACGCCGGAGCGGCGACTATGTCGTGTTCG
ACCTTGCAGCCAATGCGTTCCTGCATCACATGGTGCGCAATATCGTCGGT
AGTCTCGTCTACGTAGGCAACGGCAGGCATGAGCCGGCGTGGCTGGCGGA
TGTGCTGGACAGCGGCAATCGCGCGTTGGCGGCGCCGACGCTGGAGGCGG
CGGGGCTCTATCTTGCGCACGTGAGCTATGATGCGAAATGGGGTTTGCCC
GCGCTTGCGCGCCGGGCGTGGTTTGAAGAGATCTGA
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