mRNA_P-wetherbeei_contig14230.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14230.1.1
Unique NamemRNA_P-wetherbeei_contig14230.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A1F4BC39_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BC39_9PROT)

HSP 1 Score: 118 bits (296), Expect = 2.060e-28
Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   10 DIAGAAPAAPVGTSSVVPLDPDFKLDLSGDVTMAPGSAPDIPPLDIP---DIKLDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            DIA  A AAP   ++V+    DF+++L      AP +A            D KLD +SLNLD+ PKA A A GG KD HWYDVQTKFDLAKAYQEMGDKDGA+EILQEVIKEGD  Q+ +AK LL+SLG
Sbjct:  681 DIALEA-AAPAQDANVI----DFQIELPKVEASAPEAAXXXXXXXXXXGLDFKLDGLSLNLDE-PKAGAPAAGGDKDGHWYDVQTKFDLAKAYQEMGDKDGAKEILQEVIKEGDTEQKAQAKTLLDSLG 803          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A3N5NA58_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NA58_9PROT)

HSP 1 Score: 107 bits (266), Expect = 2.820e-27
Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   16 AGAAPAAPVGTSSVVPLDPDFKLDLSGDVTMAPGS----APDIPPLDIPDIK--LDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            AG  P  PV  ++ +  D     + S DVT+ P       P+  P +   ++  LD +SL+L    K +A       DDHWYDVQTKFDLAKAYQEMGDKDGAREIL EVIKEGDA QQ EA +LL+ LG
Sbjct:    4 AGTQPP-PVEPTTDISFDLQLPGETSTDVTVPPTDISLQVPEFKPAETSTMEFALDTVSLDLGSVEKKEAPPPAPVHDDHWYDVQTKFDLAKAYQEMGDKDGAREILAEVIKEGDAQQQAEANELLSKLG 132          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A7X1P296_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P296_9PROT)

HSP 1 Score: 110 bits (274), Expect = 1.930e-25
Identity = 71/138 (51.45%), Postives = 85/138 (61.59%), Query Frame = 1
Query:   25 APAAPVGTSSVVPLDPDFKLDLSGDVTMAPGSAPD----IPP----LDIPDIK----------LDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSL 384
            AP  P G++       D   D+S D  +   S P     +PP    LD+P+ K          LD +SL+L  A K++AA G  A DDHWYDVQTKFDLAKAYQEMGDK+GAREIL EVIKEGDA QQ EA +LL+ L
Sbjct:  788 APTIPQGSAMPPVTAADTTADISFDFELPAQSPPTADMVVPPTDIKLDVPEFKPADTTTIDFALDTVSLDLGGAEKSEAA-GAPAHDDHWYDVQTKFDLAKAYQEMGDKEGAREILAEVIKEGDAQQQAEANELLSKL 924          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A3N5W953_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5W953_9PROT)

HSP 1 Score: 105 bits (261), Expect = 8.300e-25
Identity = 70/141 (49.65%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 MDFDIAG-----AAPAAPVGTSSVVPLDPDFKL---DLSGDVTMAPGSAPDIPPLDIP-DIKLD--DISLNLDDAPKADAAA-GGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            +D  I+G     AA A P        +D +F+L   D    V  AP +AP     D   D K+D  D+++NLDDA     A    G KD HWYDVQ KFDLAKAYQEMGD DGAREILQEV+KEGDA Q+ +A++LL +LG
Sbjct:  164 LDSTISGMASDIAADATPTVAGDASTIDFNFELPPVDSPAPVAAAPAAAP---ATDAGFDFKIDVGDLNINLDDASTTTTATPAAGGKDSHWYDVQQKFDLAKAYQEMGDNDGAREILQEVLKEGDAEQKGQAQKLLGTLG 301          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A1F4DJT2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DJT2_9PROT)

HSP 1 Score: 105 bits (262), Expect = 7.880e-24
Identity = 56/79 (70.89%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  151 DIKLDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            ++ L DI+LNLDD P+ DAAA G  KD HWYDVQ KFDLAKAYQEM DK GA+EILQEVI+EGD  QQ +AK LL SLG
Sbjct:  696 ELDLGDINLNLDDKPQ-DAAAAGEVKDAHWYDVQAKFDLAKAYQEMSDKAGAQEILQEVIREGDPEQQAQAKALLASLG 773          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A7C2Y786_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2Y786_9PROT)

HSP 1 Score: 100 bits (250), Expect = 3.270e-22
Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   61 PLDPDFKLDLSGDVTMAPGSAPDIPPLDIPDIKLDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSL 384
            PL+   +L  +G  +  P +  D         KL DI LNLD  P +   A GG KD HWYDVQTKFDLAKAY+EMGDK GAR+IL EVI+EGDA QQ +AK LL  L
Sbjct:  686 PLEFHIELPPAGGASSTPSATADT----AASFKLPDIDLNLDATPPS---AAGGGKDAHWYDVQTKFDLAKAYEEMGDKAGARQILGEVIREGDAEQQAQAKSLLARL 786          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A1F4DRQ1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DRQ1_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 7.260e-21
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 MDFDIAGAAPAAPVGTSS---------VVPLDPDFKLDLSGDVTMAPGSAPD----IPPLDIP----------------DIKLD--DISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            +DF++  AAP+    +++         + P +P+ K D++     +  +A D    +P +D+P                D KLD   ++LNLDD   A AA+ G  KD HWYDVQ KFDLAK YQEMG+K+ A EIL+EV+KEGDA Q+ +AK LL++LG
Sbjct:  609 LDFNLDAAAPSDTAASATDAGAGFKIEIPPAEPEMKPDIAHGAHESVPAALDFNLELPKVDVPQAGAPAQPKQEQGADVDFKLDFGSVNLNLDDKQPAGAASRGD-KDAHWYDVQQKFDLAKVYQEMGEKNNAVEILEEVMKEGDAEQRAQAKALLDTLG 767          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: UPI001989EA25 (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001989EA25)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-20
Identity = 64/133 (48.12%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 MDFDIAGAAPAAPVGTSSVVP-----LDPDFKLDLSGDVTMAPGSAPDIPPLDIPDIKLDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSL 384
            +DFD    +  A   TSS  P             +SG    APG          P+I L  ISL+L    +   A     KDDHWYDVQTKFDLAKAYQEMGDKDGAREIL+EV++EGDA Q+T A+ +L+SL
Sbjct:  784 LDFDFDLDSLTASTATSSAAPPAEXXXXXXXXXXMSGLSLDAPGEPRMENRSVAPEIDLSGISLDL--GTETAPAISPTGKDDHWYDVQTKFDLAKAYQEMGDKDGAREILKEVLQEGDAEQKTAAQSVLSSL 914          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: A0A7V8ZPP4_9BURK (FimV family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZPP4_9BURK)

HSP 1 Score: 95.1 bits (235), Expect = 3.480e-20
Identity = 66/134 (49.25%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   10 DIAGAAPAAPVGTSSVVPLDPDFKLDLSGDVT---MAPGSAPDIPPLDIPDIK----LDDISLNLDDAPKA-DAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            D   AA  A  G  S  PL   F+LD     T    A G   +    D+P++     L  I LN D A  A +      A++D WYDVQTKFDLAKAYQEMGDK+GAREILQEV++EGDA QQ  +K LL SLG
Sbjct:  772 DHDAAASRAQAGELS--PLTSAFELDFPRQETGDRQATGDGNEQDRKDVPNVAVHTDLSTIDLNFDSARTAQERVEAPVARNDQWYDVQTKFDLAKAYQEMGDKEGAREILQEVVQEGDAEQQANSKALLASLG 903          
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Match: UPI00199A3CAB (Uncharacterized protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI00199A3CAB)

HSP 1 Score: 93.2 bits (230), Expect = 1.400e-19
Identity = 61/144 (42.36%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 MDFDIAGAA------------PAAPVGTSSVVPLDPDFKLDLSGDVTM---APGSAPDIPPLDIPDIKLDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKDGAREILQEVIKEGDAAQQTEAKQLLNSLG 387
            +DFD+ GA             P       +  P+DPD  + +  D+ +   +P + P  P  D P + L  +S +L  A   DA  G    D  W +V TK DLAKAYQEMGDKDGARE+L EV+KEGDAAQQ +A+Q+L+ LG
Sbjct:  376 LDFDLGGATDADDSEKTMLLPPRKKAAEPAARPMDPDATVAMDFDLNLDLDSPRTEPAKPAADAP-LDLGGLSFDLGGA--GDATTGNA--DPKWQEVATKLDLAKAYQEMGDKDGARELLNEVVKEGDAAQQGQARQMLSGLG 514          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14230.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4BC39_9PROT2.060e-2858.14Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5NA58_9PROT2.820e-2750.77Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A7X1P296_9PROT1.930e-2551.45Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5W953_9PROT8.300e-2549.65Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A1F4DJT2_9PROT7.880e-2470.89Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C2Y786_9PROT3.270e-2254.63Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DRQ1_9PROT7.260e-2140.63Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI001989EA251.870e-2048.12Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
A0A7V8ZPP4_9BURK3.480e-2049.25FimV family protein n=1 Tax=Burkholderiales bacter... [more]
UPI00199A3CAB1.400e-1942.36Uncharacterized protein n=1 Tax=Candidatus Parcuba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14230contigP-wetherbeei_contig14230:123..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog395494.Galf_0495
Preferred namefimV
PFAMsLysM
Model size390
Max annot lvl28216|Betaproteobacteria
KEGG koko:K08086
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.16e-16
EggNOG OGsCOG3170@1|root,COG3170@2|Bacteria,1MXV7@1224|Proteobacteria,2VHX1@28216|Betaproteobacteria,44VR7@713636|Nitrosomonadales
Descriptionpilus assembly protein FimV
Cds size390
COG categoryNU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.19453-CDS-P-wetherbeei_contig14230:122..5121683186014.19453-CDS-P-wetherbeei_contig14230:122..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14230 123..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14230.1.1prot_P-wetherbeei_contig14230.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14230 123..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14230.1.1

>prot_P-wetherbeei_contig14230.1.1 ID=prot_P-wetherbeei_contig14230.1.1|Name=mRNA_P-wetherbeei_contig14230.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MDFDIAGAAPAAPVGTSSVVPLDPDFKLDLSGDVTMAPGSAPDIPPLDIP
DIKLDDISLNLDDAPKADAAAGGGAKDDHWYDVQTKFDLAKAYQEMGDKD
GAREILQEVIKEGDAAQQTEAKQLLNSLG*
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mRNA from alignment at P-wetherbeei_contig14230:123..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14230.1.1 ID=mRNA_P-wetherbeei_contig14230.1.1|Name=mRNA_P-wetherbeei_contig14230.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig14230:123..512+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTCGACATCGCCGGCGCGGCGCCGGCCGCGCCGGTCGGCACCAG TTCGGTGGTGCCGCTCGACCCCGATTTCAAGCTCGACCTCAGCGGCGACG TAACGATGGCGCCGGGCAGCGCTCCAGACATTCCCCCGCTCGACATTCCA GATATCAAGCTTGACGATATCAGCCTCAACCTCGACGACGCGCCCAAAGC GGACGCTGCGGCCGGGGGTGGCGCCAAGGACGATCATTGGTACGATGTGC AAACCAAATTCGATCTGGCCAAGGCTTACCAGGAAATGGGCGACAAGGAC GGTGCGCGCGAAATCCTGCAGGAAGTCATCAAAGAGGGCGACGCGGCGCA GCAAACGGAAGCGAAGCAACTGCTTAACTCTCTCGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14230:123..512+

>mRNA_P-wetherbeei_contig14230.1.1 ID=mRNA_P-wetherbeei_contig14230.1.1|Name=mRNA_P-wetherbeei_contig14230.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig14230:123..512+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTCGACATCGCCGGCGCGGCGCCGGCCGCGCCGGTCGGCACCAG
TTCGGTGGTGCCGCTCGACCCCGATTTCAAGCTCGACCTCAGCGGCGACG
TAACGATGGCGCCGGGCAGCGCTCCAGACATTCCCCCGCTCGACATTCCA
GATATCAAGCTTGACGATATCAGCCTCAACCTCGACGACGCGCCCAAAGC
GGACGCTGCGGCCGGGGGTGGCGCCAAGGACGATCATTGGTACGATGTGC
AAACCAAATTCGATCTGGCCAAGGCTTACCAGGAAATGGGCGACAAGGAC
GGTGCGCGCGAAATCCTGCAGGAAGTCATCAAAGAGGGCGACGCGGCGCA
GCAAACGGAAGCGAAGCAACTGCTTAACTCTCTCGGTTGA
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