mRNA_P-wetherbeei_contig1423.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1423.2.1
Unique NamemRNA_P-wetherbeei_contig1423.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1423.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1423contigP-wetherbeei_contig1423:1582..3660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size899
Hectar predicted targeting categoryother localisation
Exons4
Cds size456
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1423.2.1prot_P-wetherbeei_contig1423.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1423 2012..3277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.9866018-UTR-P-wetherbeei_contig1423:1581..16281683186013.9866018-UTR-P-wetherbeei_contig1423:1581..1628Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1423 1582..1628 +
1683186013.9983995-UTR-P-wetherbeei_contig1423:1998..20111683186013.9983995-UTR-P-wetherbeei_contig1423:1998..2011Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1423 1999..2011 +
1683186014.0305712-UTR-P-wetherbeei_contig1423:3277..36601683186014.0305712-UTR-P-wetherbeei_contig1423:3277..3660Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1423 3278..3660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.0060601-CDS-P-wetherbeei_contig1423:2011..21731683186014.0060601-CDS-P-wetherbeei_contig1423:2011..2173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1423 2012..2173 +
1683186014.0137885-CDS-P-wetherbeei_contig1423:2348..24321683186014.0137885-CDS-P-wetherbeei_contig1423:2348..2432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1423 2349..2432 +
1683186014.0221252-CDS-P-wetherbeei_contig1423:3067..32771683186014.0221252-CDS-P-wetherbeei_contig1423:3067..3277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1423 3068..3277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1423.2.1

>prot_P-wetherbeei_contig1423.2.1 ID=prot_P-wetherbeei_contig1423.2.1|Name=mRNA_P-wetherbeei_contig1423.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MSPAKWRDRLGGPLPGRKCLPGLPRQIDRLYDASTTVTLQGSKKRSRAFK
QANALLFCFLADKLELDEGYCRAVAEAPRRRRDDLLKSMIHQVAHASVGG
PARLCPSATASTSSPMPTRWPSCRAPAASTLSSPPATASGVACRHLYRRQ
H*
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mRNA from alignment at P-wetherbeei_contig1423:1582..3660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1423.2.1 ID=mRNA_P-wetherbeei_contig1423.2.1|Name=mRNA_P-wetherbeei_contig1423.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2079bp|location=Sequence derived from alignment at P-wetherbeei_contig1423:1582..3660+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCGGGGGCAGGTTCGGCCCTCCACCGGCACTCCCGATGAAAAAGAGTG
AGTGGAATGAATCATTGCTTGGGCAGCGGGCGAAGTAGCTTAGGTAGCTA
ACTAGAGGAGAAGGAAGAAAAGAGGCGCCTTCTGCCGTGCATGCCTGTCC
ATTTCGCCGTCCGCCCCAAAAAATGCGGCTGCGGCGTCAGTCGCCATTAT
GCTTCTTCCTTCCATGCCATTGCGTCAAGCGGCCGATTGGTTGCTAATGT
TTGCTTGCTTTACACGCCGGCCGCAGGGGCGCTTCATCGCTATTATCATG
AGTTCATGTGATGCCGCCCTTTCCTTTGCTGCGCTCGCATCGCCACCGGT
GGTGCCGCTGGCTGCAAAACCGGCTGCTCGGCCGCTCTTGATACGACAAA
TATCTGCGAGGCAGCAGGTCATAACCCCAGATGTCGCCGGCAAAGTGGCG
TGACCGACTGGGCGGACCTCTACCCGGACGAAAGTGTCTTCCCGGGCTTC
CGCGTCAAATTGACCGACTCTATGACGCCTCCACCACTGTCACCCTCCAG
GGGTCGAAAAAACGGTCGCGGGCCTTTAAACAAGCGAACGCGGTATGTGA
ATATTGCTGACCCGCCAAACAAAGTGCGCATTTTTCGCGGTCACCGCGTA
TGTTTGCCTGGCATGCCAATCGTTCTCTTCATCTTGAATAAAAGCACCTA
ATATTTCTGTCTTTCCTCCCTCCTCTTACCGGTTCGGCACCGCCTCCGTT
TTTCCTATCTCTGGCAGCTGCTGTTTTGCTTTCTTGCAGACAAGCTGGAG
CTGGACGAAGGCTACTGCCGAGCCGTTGCTGAGGCCCCGCGACGTCGACG
CGCGGACCACGCTGCGGCTGATGCACTACTAGCTACCCCGTGAGCGAGGC
GGCGTCGCTCAAAGGAGATGAAGCACCGCGCCGGCCCGCACACGGACTTT
GCGCTGTTTCCTCTCATTTAACAGGTGGCGCAATCAGCCAGTCGATCGGT
CCGGCGATTGGCTTGGTGCGTGCATCCCGCATACGCCTACCTAGACTGGA
GAGAGCGTACTGAAAGGGCAGTGAATGGCTCCGTTCAGCGGCGGCTGGGC
TTGGCAAGACCAGTGCAATCTTAACCTTCCCGCCGCCTGTGATCCAACTG
TCTGTTCGGCAGCGGGCGCGAGAGCACGGGCTGCAGGCCTGCGCCGGCCG
CAACGCCGCCATGGGCAAGGTGGGGTGGACCCCCGTGCCCGCCATCGGCG
GCGACGTCATTTCCATCGACGTCGGAAGTAAGCTCATGCGGTGGTCGGCA
AATGCTTTTTTCCGCGCTATGCACTCTCCTGTCGCGGGTCCCCACACCCA
CTGATTTCACTTTTTGTTTAGCTCGGAGGGCTCGTTGTCACTGCTTTCCT
CTGGATTATCCCACCCGCACGCCCGTCAACCTACAGCGCCCGATGTCAAA
TGTCCCTTCTTCCGCCGCAGTCTGTGTGGTCCACAGGACGACCTACTCAA
GTCCATGATCCACCAGGTCGCTCATGCCTCCGTGGGCGGGCCAGCACGCC
TGTGCCCGAGCGCTACAGCCTCGACTTCTTCGCCCATGCCAACGAGATGG
CCGTCATGTCGGGCCCCGGCGGCAAGTACCCTCTCATCACCTCCGGCAAC
TGCATCAGGGGTTGCATGCCGCCACCTTTACCGGCGACAACATTAGCCGC
GGCGTAGGCGGCATTCCCGTGTCGGGCATGGCATTCGCGGCAGCCGCGGG
CGGCGACGCCGACGGGCGACGGGTGATGGCGACGCCATCGTCCCCGCCAC
TGTTCCGGAGGTGTGCGTGATTGCGGCGACGGCGCTGACGCCGGAAGCGG
CCGAGGGTGGGCTGCGGTGGCCGGAGTCGCCCCACAGCGGCCTGTCGGCA
GAGCACTAAGAGTTCGAAGAGCGTAATCCCGTTTACTTTTTAGAATCCAA
GAAAGGAGGCGTGGGTCAGTCATCATGGAATTGAAAACCCGATCAATCTA
GCCACATGTGTCGTAAGACTGAGATCCCTAATAGTACCACGTGCTGATTG
TTTTATGTATATGAATACAGATACGGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1423:1582..3660+

>mRNA_P-wetherbeei_contig1423.2.1 ID=mRNA_P-wetherbeei_contig1423.2.1|Name=mRNA_P-wetherbeei_contig1423.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1423:1582..3660+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCCGGCAAAGTGGCGTGACCGACTGGGCGGACCTCTACCCGGACG
AAAGTGTCTTCCCGGGCTTCCGCGTCAAATTGACCGACTCTATGACGCCT
CCACCACTGTCACCCTCCAGGGGTCGAAAAAACGGTCGCGGGCCTTTAAA
CAAGCGAACGCGCTGCTGTTTTGCTTTCTTGCAGACAAGCTGGAGCTGGA
CGAAGGCTACTGCCGAGCCGTTGCTGAGGCCCCGCGACGTCGACGCGACG
ACCTACTCAAGTCCATGATCCACCAGGTCGCTCATGCCTCCGTGGGCGGG
CCAGCACGCCTGTGCCCGAGCGCTACAGCCTCGACTTCTTCGCCCATGCC
AACGAGATGGCCGTCATGTCGGGCCCCGGCGGCAAGTACCCTCTCATCAC
CTCCGGCAACTGCATCAGGGGTTGCATGCCGCCACCTTTACCGGCGACAA
CATTAG
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