mRNA_P-wetherbeei_contig14229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14229.1.1
Unique NamemRNA_P-wetherbeei_contig14229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: A0A1Q3HNY3_9DELT (DLH domain-containing protein n=1 Tax=Archangium sp. Cb G35 TaxID=1920190 RepID=A0A1Q3HNY3_9DELT)

HSP 1 Score: 164 bits (414), Expect = 2.690e-45
Identity = 104/244 (42.62%), Postives = 135/244 (55.33%), Query Frame = 1
Query:  154 RVAAPAAPAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFA-------SGGRPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQEGNYPPGST--LRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREP-FNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKLGTAP 846
            R++ P +  GK+ AVV+AHGSGG+D R + Y  AL +AGIATLEI+M+A       S GRP  +  T P   GAL FL+++P+ID +RIG+MGFSWGG + +  A    Y  G+    R+ A  P YPVC   N       G LTG PV + AG  D YD  D C RL   ++      + + VYP ATH WD  R EP     D +A  G GG+V +VP   T   S    V FF  + G +P
Sbjct:   59 RLSIPTSAQGKVPAVVIAHGSGGVDTRGSYYAQALHEAGIATLEIDMWAARGLSGGSEGRPRAVSETMPDAWGALKFLSSHPSIDASRIGIMGFSWGGVMSMLSATR-KYASGAEPGQRFVAHAPLYPVCWVYNRVPGYEFGELTGSPVFLQAGEADAYDDPDSCQRLVDSLSPADRDDMALTVYPGATHGWD--RLEPAIRITDPYAHTGKGGEVDIVPSPETAETSRRAVVDFFRTRFGLSP 299          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: UPI0014855F8A (dienelactone hydrolase family protein n=1 Tax=Roseomonas sp. AR75 TaxID=2562311 RepID=UPI0014855F8A)

HSP 1 Score: 161 bits (408), Expect = 1.990e-44
Identity = 120/295 (40.68%), Postives = 153/295 (51.86%), Query Frame = 1
Query:   40 FLAAGLFVCGIAPPAQAQLAEGWTPVPF-PGRPDATFRARVAAPA---------APAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFASGG---------RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQEG---NYPPGSTLRYAALMPFYPVC------NPSLRNGVGALTGRPVLILAGGRDDYDASD--DCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPFNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKL 834
            FLA GL V  +A PA AQ +   T  P+ P       + R A P+         A  G++AAV++ HGSGG+DGR  AY  AL+ AGIA+LE++MF   G         RP R     P V GA  FLAA+P +DP R+G+MG S+GGGL + +A +G    Y  G    + A +P YP C       P+      A     +LILAG  DDYDA     C ++AA  N +        V+P ATH WDT R  P N+ D  A RGAGG VR   +AA   D   R V+FF A L
Sbjct:    5 FLALGL-VASLAAPAGAQDSRSVTFPPYLPANLPQWAQPRAAPPSQIPGTLRLPAGTGRVAAVIILHGSGGVDGRGEAYARALQQAGIASLEVDMFRPRGIGAGQGVANRP-RSADVLPDVYGAARFLAADPRVDPGRLGVMGMSYGGGLSILVATDGVRRAYGTGGP-DFRAALPIYPACWAYDAGGPAAALVNQAFPRMRMLILAGADDDYDADGGASCRKIAAAGNAQXXXXXXXQVFPGATHGWDTQR--PANYRDPAAARGAGGMVRFQRNAAVAQDGTQRVVAFFQAAL 294          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: A0A1L9AWS5_9DELT (DLH domain-containing protein n=2 Tax=Cystobacter ferrugineus TaxID=83449 RepID=A0A1L9AWS5_9DELT)

HSP 1 Score: 161 bits (407), Expect = 3.190e-44
Identity = 116/294 (39.46%), Postives = 150/294 (51.02%), Query Frame = 1
Query:   43 LAAGLFVCGIAPPA------------QAQLA-EGWTPVPFPGRP-DATFRARVAAPAAPAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFA----SGG---RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQEGNYPPGST--LRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPFNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKLGTAP 846
            L+  LFVCG APPA            Q  +A   +   P  G P       ++  P + +GKL AVV+AHGSGG+D R + Y  AL +AGIATLEI+M++    SGG   RP  +  T P   GAL FL+A+PAID ARIG+MGFSWGG + +  A    Y  G+    R+ A  P YPVC   N       G LTG PV + AG  D YDA D C  L   ++     ++ + +Y  ATH WD          D +A +G GG V + P   +  +S    V FF   L  AP
Sbjct:   11 LSLALFVCGCAPPAPELDPSPTDEAIQTPVATSAYVSFPALGTPAPLQVAGQLRLPRSASGKLPAVVIAHGSGGVDSRGSYYARALNEAGIATLEIDMWSARGLSGGAEGRPRAVSETLPDAHGALRFLSAHPAIDGARIGIMGFSWGGVMSMLTATR-KYAAGAEPGQRFVAHAPLYPVCWVYNRVPGYEFGDLTGAPVFLQAGTADVYDAPDSCQTLLESLSPMDRASLSLKMYEGATHGWDRLE-SAIQVSDPYAHQGQGGLVDIAPSPGSARESRRAVVEFFQRTLVPAP 302          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: A0A0G2ZMW7_9DELT (DLH domain-containing protein n=2 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZMW7_9DELT)

HSP 1 Score: 158 bits (400), Expect = 2.850e-43
Identity = 102/244 (41.80%), Postives = 135/244 (55.33%), Query Frame = 1
Query:  154 RVAAPAAPAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFA----SGG---RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQEGNYPPGST--LRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREP-FNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKLGTAP 846
            R++ P    GK+ AV++AHGSGG+D R + +  AL  AGIATLEI+M+A    SGG   RP  +  T P   GAL +L+A+P+ID +RIG+MGFSWGG + +  A    Y  G+    R+ A  PFYPVC   N       G LTG P+ I AG  D YD  D C RL   ++     +V + +YP ATH WD  R EP     D ++  G GG+V + P   T   S    V FF  + G +P
Sbjct:   54 RLSIPTGAQGKVPAVLIAHGSGGVDTRGSYHAQALLAAGIATLEIDMWAARGLSGGAEGRPRAVAETLPDAWGALKYLSAHPSIDASRIGIMGFSWGGLMSMLSATR-KYAAGAEPGQRFVAHAPFYPVCWAYNRVPSYEFGELTGSPIFIQAGEADQYDDPDSCQRLVDSLSPADRESVSLTMYPGATHGWD--RLEPAIRITDPYSHTGRGGEVDIAPSPETAETSRRAVVDFFRKRFGLSP 294          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: A0A2U1C9F2_9BURK (Dienelactone hydrolase n=2 Tax=unclassified Simplicispira TaxID=2630407 RepID=A0A2U1C9F2_9BURK)

HSP 1 Score: 158 bits (399), Expect = 3.810e-43
Identity = 111/271 (40.96%), Postives = 135/271 (49.82%), Query Frame = 1
Query:   82 AQAQLAEGWTPVPFPGRP----DATFRARVAAPAAPAGKLAAVVVAHGSGGIDGRANA-YVVALRDAGIATLEIEMFASGGRPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQE--GNYPPGSTLRYAALMPFYPVC----------NPSLRNGVGA-LTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPFNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKLGT 840
            AQAQ      PV F        D      +  PA   GK+AAVVV H +GG +    A YV AL  AGIATLE+ +F+ GGRP       P   GAL +LA  P ID   IG+MGFS GG L L  A +   N   G   ++AA +P YPVC          NP     V   LTG PV ILAG +DDYDA D C +  A +       V + +YPDATH WDT   +  N+ D+ A +G GG VR     AT   S+  +  FF   L T
Sbjct:   23 AQAQGPANKQPVSFKANTVIEADTLVSGDLTLPAGAVGKVAAVVVIHSAGGYEDPTRAPYVQALHQAGIATLELNLFSGGGRPKSSLMNLPQTFGALMYLAQLPQIDSEHIGIMGFSHGGLLSLLSASKKLNNDYTGGQFKFAAHLPLYPVCWAHLAAAEGKNPVYPQNVYVELTGAPVHILAGAKDDYDAPDSCQKFIAALPDAARSQVALTLYPDATHGWDTNTDK--NYKDQAAHQGRGGYVRHFRSTATAQQSLDFSRQFFTTHLST 291          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: A0A536SZD5_9PROT (DLH domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SZD5_9PROT)

HSP 1 Score: 157 bits (398), Expect = 5.500e-43
Identity = 101/231 (43.72%), Postives = 126/231 (54.55%), Query Frame = 1
Query:  184 KLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFASGG------RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQEGNYPP---GSTLRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREP-FNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKLG 837
            ++ AVV+ HGS G+D R + Y   L DAGIATLEI+M+A+ G      RP  +  T P   GA   LAA+PAIDP RIG+MGFSWGG + +  A    Y     G   R+AA  P YPVC   N      +  LTG P+L+  G  DDYD  D C +    +       V + VYPDA H WD  R EP     D ++  G GG+VR+ P+ A    S A TVSFF  KLG
Sbjct:   60 RVPAVVIVHGSAGVDSRGSLYAADLNDAGIATLEIDMWAARGIRGPEGRPKGVPETLPDAYGAFKLLAAHPAIDPDRIGIMGFSWGGVVSMLTASR-IYTERYLGKGARFAAHAPNYPVCWVYNRVPGYEMKELTGAPILLQTGTLDDYDQPDTCAKWLQALPGDVARLVSLTVYPDAAHGWD--RLEPAIVVNDPYSHLGRGGEVRIAPNEAVAVASRAATVSFFRCKLG 287          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: UPI00194DD374 (dienelactone hydrolase family protein n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00194DD374)

HSP 1 Score: 157 bits (396), Expect = 1.310e-42
Identity = 112/263 (42.59%), Postives = 138/263 (52.47%), Query Frame = 1
Query:  115 VPFPGRPDAT---FRARVAAPAAPAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFA----SGG---RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQE---GNYPPGSTLRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPF-NFYDRFAMRGAGGQVRVVP--DAATKADSVARTVSFFAAKLGTAP 846
            V FP    AT      R++ P    GK  AVV+AHGS G+D R + +  AL +AGIATLEI+M++    SGG   RP  +  T P   GAL +L+A P ID +RIG+MGFSWGG + +  A         PG   R+ A  PFYPVC   N       GALTG PV I AG  D YD  D C +L   ++      V + VYP ATH WD  R EP     D ++  G GG V +VP  DAA K+   A  V FF    G  P
Sbjct:   44 VSFPALGTATPLQVAGRLSLPTNAEGKTPAVVIAHGSSGVDSRGSFHARALNEAGIATLEIDMWSARGLSGGAEGRPQAVSETLPDAWGALKYLSAQPTIDASRIGIMGFSWGGVMAMLAATRKYAAQSEPGQ--RFVAYAPFYPVCWAYNRVPGYEFGALTGAPVFIQAGEADQYDDPDSCQKLVDSLSPEDRSLVSLTVYPGATHAWD--RLEPAAQVEDPYSHTGQGGTVDLVPSPDAAEKSRRAA--VDFFRKAFGMTP 300          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: UPI0019591F19 (dienelactone hydrolase family protein n=1 Tax=Archangium primigenium TaxID=2792470 RepID=UPI0019591F19)

HSP 1 Score: 156 bits (395), Expect = 1.980e-42
Identity = 99/226 (43.81%), Postives = 126/226 (55.75%), Query Frame = 1
Query:  181 GKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFASGG-------RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMA-QEGNYPPGSTLRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPF-NFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFF 822
            G++ AVV+AHGSGG+D R   Y  AL +AGIATLEI+M+A+ G       RP  +  T P   GAL +L+A+PAID +RIG+MGFSWGG + +  A +E      S  R+ A  P YPVC   N     G   LTG PV I AG  D YDA D C  L   +       V + VYP ATH WD  R +P     D ++ RG GG+V +VP   +  +S    V FF
Sbjct:   72 GRMPAVVIAHGSGGVDTRGAFYARALHEAGIATLEIDMWAARGLTGGAEGRPQAVSETLPDAYGALKYLSAHPAIDASRIGIMGFSWGGVMSMLTATRENEARAESGQRFVAHAPLYPVCWVYNRVPGYGFSNLTGAPVFIQAGTADAYDAPDSCRTLIDSLGRSDNAHVSLAVYPGATHGWD--RLQPAARITDPYSHRGEGGEVDLVPSPESALESRKALVLFF 295          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: A0A1F9DK56_9DELT (DLH domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_47_11 TaxID=1797838 RepID=A0A1F9DK56_9DELT)

HSP 1 Score: 156 bits (395), Expect = 2.190e-42
Identity = 103/246 (41.87%), Postives = 133/246 (54.07%), Query Frame = 1
Query:  151 ARVAAPAAPAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFASGGRP-DRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQE------GNYPPGSTLRYAALMPFYPVCNPSLR----------NGVGALTGRPVLILAGGRDDYDASD-DCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPFNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKL 834
            AR   PA    K+ AV++ HGSGG+DGR   Y  AL++AGIATLEI MF  GGRP +  QAT PH   AL +LAA P +D  R+G+MGFSWG G+ + M+ E      G   P    +  A  PFYPVC+  +R          N    ++  P+LI +G RDDY+  +  C  L AM        V V     ATH +D+ +R+   FYD+F   G GG V VVP+    AD+    VSFF   L
Sbjct:   65 ARFGRPAGSTPKVPAVLILHGSGGVDGRGAFYAKALQEAGIATLEITMFPPGGRPREGTQATMPHAAAALKWLAAQPNVDGQRLGVMGFSWGAGMSMLMSSELVRERLGKDVP----KPVAFAPFYPVCSNWVRYLMNPKHPFYNMHTQMSAAPMLIHSGTRDDYEEGERPCDTLVAMWPVAAREHVTVRYVEGATHGFDS-QRQARQFYDQFVHAGRGGIVNVVPNPEAAADARQAVVSFFVKHL 305          
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Match: T1BB35_9ZZZZ (Carboxymethylenebutenolidase n=2 Tax=mine drainage metagenome TaxID=410659 RepID=T1BB35_9ZZZZ)

HSP 1 Score: 155 bits (391), Expect = 4.530e-42
Identity = 99/234 (42.31%), Postives = 129/234 (55.13%), Query Frame = 1
Query:  187 LAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMF-----ASGG--RPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQE---GNYPPGSTLRYAALMPFYPVC---NPSLRNGVGALTGRPVLILAGGRDDYDASDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREP-FNFYDRFAMRGAGGQVRVVPDAATKADSVARTVSFFAAKLGTAP 846
            + AVV+ HG+ G+D R + +  AL +AGIAT EI+++     A GG  RP  +  T P   GALA+L+A+PAID   IG+ G+SWGG + +  A       +   S LR+AA +P YPVC   N       G LTG PVLIL G  D Y+A+D CP L   +       V+  VYPDATH ++  R EP     D FA  G GG+V   P+    ADS  RTV FF    G +P
Sbjct:   41 IPAVVIVHGTNGVDSRGSYHAEALNEAGIATFEIDLWGARGLAGGGEGRPAGVIETLPDAYGALAWLSAHPAIDATHIGITGYSWGGVVSMLTATRFYTRQFMDESGLRFAAHVPLYPVCWVYNKMPSYEFGHLTGAPVLILTGALDTYEAADTCPNLVQQLAPADRSCVEAIVYPDATHAFN--RLEPAVTVNDPFAYFGQGGEVLFAPNPDAAADSRLRTVRFFQQAFGMSP 272          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q3HNY3_9DELT2.690e-4542.62DLH domain-containing protein n=1 Tax=Archangium s... [more]
UPI0014855F8A1.990e-4440.68dienelactone hydrolase family protein n=1 Tax=Rose... [more]
A0A1L9AWS5_9DELT3.190e-4439.46DLH domain-containing protein n=2 Tax=Cystobacter ... [more]
A0A0G2ZMW7_9DELT2.850e-4341.80DLH domain-containing protein n=2 Tax=Archangium g... [more]
A0A2U1C9F2_9BURK3.810e-4340.96Dienelactone hydrolase n=2 Tax=unclassified Simpli... [more]
A0A536SZD5_9PROT5.500e-4343.72DLH domain-containing protein n=2 Tax=Betaproteoba... [more]
UPI00194DD3741.310e-4242.59dienelactone hydrolase family protein n=1 Tax=Arch... [more]
UPI0019591F191.980e-4243.81dienelactone hydrolase family protein n=1 Tax=Arch... [more]
A0A1F9DK56_9DELT2.190e-4241.87DLH domain-containing protein n=1 Tax=Deltaproteob... [more]
T1BB35_9ZZZZ4.530e-4242.31Carboxymethylenebutenolidase n=2 Tax=mine drainage... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14229contigP-wetherbeei_contig14229:477..1328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1223521.BBJX01000002_gene2818
PFAMsDLH
Model size852
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.58e-41
EggNOG OGsCOG0412@1|root,COG0412@2|Bacteria,1R3DI@1224|Proteobacteria,2VUJ3@28216|Betaproteobacteria
Descriptiondienelactone hydrolase
Cds size852
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.958964-CDS-P-wetherbeei_contig14229:476..13281683186013.958964-CDS-P-wetherbeei_contig14229:476..1328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14229 477..1328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14229.1.1prot_P-wetherbeei_contig14229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14229 477..1328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14229.1.1

>prot_P-wetherbeei_contig14229.1.1 ID=prot_P-wetherbeei_contig14229.1.1|Name=mRNA_P-wetherbeei_contig14229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MPRGETMYRLAIAFLAAGLFVCGIAPPAQAQLAEGWTPVPFPGRPDATFR
ARVAAPAAPAGKLAAVVVAHGSGGIDGRANAYVVALRDAGIATLEIEMFA
SGGRPDRLQATYPHVLGALAFLAANPAIDPARIGLMGFSWGGGLGLAMAQ
EGNYPPGSTLRYAALMPFYPVCNPSLRNGVGALTGRPVLILAGGRDDYDA
SDDCPRLAAMMNTRTPGAVDVHVYPDATHIWDTTRREPFNFYDRFAMRGA
GGQVRVVPDAATKADSVARTVSFFAAKLGTAPR*
back to top

mRNA from alignment at P-wetherbeei_contig14229:477..1328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14229.1.1 ID=mRNA_P-wetherbeei_contig14229.1.1|Name=mRNA_P-wetherbeei_contig14229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig14229:477..1328+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGGGGGGAGACCATGTACCGTCTGGCGATCGCCTTTCTTGCCGC CGGCCTGTTTGTCTGCGGAATCGCCCCGCCGGCGCAGGCCCAGCTTGCCG AAGGCTGGACCCCCGTTCCGTTTCCCGGCCGGCCGGATGCCACCTTCCGC GCGCGGGTCGCGGCCCCGGCCGCACCGGCCGGCAAGCTGGCGGCGGTCGT CGTCGCGCACGGCTCGGGCGGCATCGACGGGCGCGCCAACGCCTATGTCG TGGCCCTGCGCGATGCCGGTATCGCGACGCTGGAGATCGAGATGTTCGCG TCCGGCGGCCGGCCCGACCGGCTGCAGGCGACCTACCCGCACGTGCTCGG CGCGCTCGCGTTCCTTGCCGCGAATCCCGCGATCGATCCGGCGCGCATCG GGCTGATGGGCTTCTCGTGGGGCGGCGGGCTTGGCCTGGCGATGGCGCAG GAAGGCAACTACCCGCCCGGTTCGACGCTGCGCTACGCAGCGCTGATGCC GTTCTACCCGGTCTGCAACCCCTCGCTGCGCAACGGCGTAGGCGCGCTGA CCGGCCGGCCCGTGCTGATCCTCGCCGGCGGCCGCGACGACTACGACGCG TCCGACGACTGCCCGAGGCTCGCGGCCATGATGAACACGCGCACGCCCGG TGCGGTCGATGTCCATGTCTACCCGGACGCCACACATATCTGGGACACGA CGCGCCGCGAGCCGTTCAACTTCTACGACCGCTTCGCGATGCGCGGGGCG GGCGGGCAGGTGCGCGTCGTGCCGGACGCCGCGACGAAGGCCGATTCGGT CGCGCGCACGGTTTCGTTCTTCGCCGCGAAACTCGGAACGGCGCCGCGCT AG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14229:477..1328+

>mRNA_P-wetherbeei_contig14229.1.1 ID=mRNA_P-wetherbeei_contig14229.1.1|Name=mRNA_P-wetherbeei_contig14229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig14229:477..1328+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGGGGGGAGACCATGTACCGTCTGGCGATCGCCTTTCTTGCCGC
CGGCCTGTTTGTCTGCGGAATCGCCCCGCCGGCGCAGGCCCAGCTTGCCG
AAGGCTGGACCCCCGTTCCGTTTCCCGGCCGGCCGGATGCCACCTTCCGC
GCGCGGGTCGCGGCCCCGGCCGCACCGGCCGGCAAGCTGGCGGCGGTCGT
CGTCGCGCACGGCTCGGGCGGCATCGACGGGCGCGCCAACGCCTATGTCG
TGGCCCTGCGCGATGCCGGTATCGCGACGCTGGAGATCGAGATGTTCGCG
TCCGGCGGCCGGCCCGACCGGCTGCAGGCGACCTACCCGCACGTGCTCGG
CGCGCTCGCGTTCCTTGCCGCGAATCCCGCGATCGATCCGGCGCGCATCG
GGCTGATGGGCTTCTCGTGGGGCGGCGGGCTTGGCCTGGCGATGGCGCAG
GAAGGCAACTACCCGCCCGGTTCGACGCTGCGCTACGCAGCGCTGATGCC
GTTCTACCCGGTCTGCAACCCCTCGCTGCGCAACGGCGTAGGCGCGCTGA
CCGGCCGGCCCGTGCTGATCCTCGCCGGCGGCCGCGACGACTACGACGCG
TCCGACGACTGCCCGAGGCTCGCGGCCATGATGAACACGCGCACGCCCGG
TGCGGTCGATGTCCATGTCTACCCGGACGCCACACATATCTGGGACACGA
CGCGCCGCGAGCCGTTCAACTTCTACGACCGCTTCGCGATGCGCGGGGCG
GGCGGGCAGGTGCGCGTCGTGCCGGACGCCGCGACGAAGGCCGATTCGGT
CGCGCGCACGGTTTCGTTCTTCGCCGCGAAACTCGGAACGGCGCCGCGCT
AG
back to top