mRNA_P-wetherbeei_contig14221.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14221.3.1
Unique NamemRNA_P-wetherbeei_contig14221.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14221.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14221contigP-wetherbeei_contig14221:710..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size829
Hectar predicted targeting categoryother localisation
Exons1
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.758375-UTR-P-wetherbeei_contig14221:709..7591683186013.758375-UTR-P-wetherbeei_contig14221:709..759Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14221 710..759 +
1683186013.7769108-UTR-P-wetherbeei_contig14221:1482..15381683186013.7769108-UTR-P-wetherbeei_contig14221:1482..1538Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14221 1483..1538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.7680295-CDS-P-wetherbeei_contig14221:759..14821683186013.7680295-CDS-P-wetherbeei_contig14221:759..1482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14221 760..1482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14221.3.1prot_P-wetherbeei_contig14221.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14221 760..1482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14221.3.1

>prot_P-wetherbeei_contig14221.3.1 ID=prot_P-wetherbeei_contig14221.3.1|Name=mRNA_P-wetherbeei_contig14221.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
MGRAADRAAGVDLAAPKAAACAVASGQDASAAMGVGGGEDDELDALLAGG
APPARAGAAKEPPATSKGVVRPQPGQPAARGARKVAASRAAAAAAAGGPA
AGSRQDGQNGFPLPPQSPAATAVPTGAAADAAGTGATAGDAMAVVYAGSD
DEEEAVTLHGEFAGAAGARKGGGGGIGDVWKPRPPPPPPPPPPEKKEPPA
PAAAARIPPGAADRVGGDDLLSAVKRKPGKGGKARRADRG*
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mRNA from alignment at P-wetherbeei_contig14221:710..1538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14221.3.1 ID=mRNA_P-wetherbeei_contig14221.3.1|Name=mRNA_P-wetherbeei_contig14221.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=829bp|location=Sequence derived from alignment at P-wetherbeei_contig14221:710..1538+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGCGGGCTCGACCCGTCACGGGCGGCGCAGACGGAGCTCTTCGCCGCC
ATGGGCCGCGCCGCGGACCGCGCGGCGGGTGTAGATTTGGCAGCACCGAA
GGCAGCTGCGTGTGCTGTGGCATCGGGGCAGGATGCTTCGGCAGCAATGG
GAGTTGGCGGCGGCGAGGACGACGAACTGGACGCGTTGTTAGCTGGTGGC
GCGCCGCCGGCGCGGGCGGGGGCGGCGAAAGAGCCACCGGCTACATCAAA
AGGGGTGGTTCGGCCGCAGCCCGGACAACCGGCAGCGAGAGGAGCAAGAA
AGGTTGCCGCGTCGCGAGCGGCAGCGGCGGCGGCAGCAGGAGGGCCGGCG
GCGGGTTCGCGGCAGGACGGGCAGAATGGATTCCCGCTCCCGCCGCAGTC
GCCAGCGGCGACAGCAGTGCCAACAGGAGCGGCGGCGGATGCGGCAGGGA
CAGGGGCAACCGCGGGCGATGCAATGGCCGTGGTGTACGCGGGCAGCGAC
GACGAGGAGGAGGCGGTGACGCTACATGGCGAATTTGCCGGTGCGGCCGG
GGCACGCAAAGGTGGCGGAGGAGGCATCGGCGATGTGTGGAAGCCGCGAC
CGCCGCCGCCGCCGCCGCCGCCACCGCCGGAAAAGAAGGAGCCGCCGGCG
CCGGCGGCGGCGGCGAGAATACCGCCGGGTGCTGCGGATAGGGTTGGCGG
CGATGATCTGCTGTCGGCAGTCAAGAGAAAACCGGGGAAGGGCGGAAAGG
CGCGCCGTGCCGATCGGGGTTAGTGTGTGGTAAGGCGGCACGACGTTACC
GCACCTCATAACTAGTTAGATTGTCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14221:710..1538+

>mRNA_P-wetherbeei_contig14221.3.1 ID=mRNA_P-wetherbeei_contig14221.3.1|Name=mRNA_P-wetherbeei_contig14221.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig14221:710..1538+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGCGCCGCGGACCGCGCGGCGGGTGTAGATTTGGCAGCACCGAA
GGCAGCTGCGTGTGCTGTGGCATCGGGGCAGGATGCTTCGGCAGCAATGG
GAGTTGGCGGCGGCGAGGACGACGAACTGGACGCGTTGTTAGCTGGTGGC
GCGCCGCCGGCGCGGGCGGGGGCGGCGAAAGAGCCACCGGCTACATCAAA
AGGGGTGGTTCGGCCGCAGCCCGGACAACCGGCAGCGAGAGGAGCAAGAA
AGGTTGCCGCGTCGCGAGCGGCAGCGGCGGCGGCAGCAGGAGGGCCGGCG
GCGGGTTCGCGGCAGGACGGGCAGAATGGATTCCCGCTCCCGCCGCAGTC
GCCAGCGGCGACAGCAGTGCCAACAGGAGCGGCGGCGGATGCGGCAGGGA
CAGGGGCAACCGCGGGCGATGCAATGGCCGTGGTGTACGCGGGCAGCGAC
GACGAGGAGGAGGCGGTGACGCTACATGGCGAATTTGCCGGTGCGGCCGG
GGCACGCAAAGGTGGCGGAGGAGGCATCGGCGATGTGTGGAAGCCGCGAC
CGCCGCCGCCGCCGCCGCCGCCACCGCCGGAAAAGAAGGAGCCGCCGGCG
CCGGCGGCGGCGGCGAGAATACCGCCGGGTGCTGCGGATAGGGTTGGCGG
CGATGATCTGCTGTCGGCAGTCAAGAGAAAACCGGGGAAGGGCGGAAAGG
CGCGCCGTGCCGATCGGGGTTAG
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