mRNA_P-wetherbeei_contig14219.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14219.1.1
Unique NamemRNA_P-wetherbeei_contig14219.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: A0A521LWJ5_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LWJ5_9HYPH)

HSP 1 Score: 158 bits (399), Expect = 6.650e-47
Identity = 90/109 (82.57%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 VVAAGWLASIAVGAAXXXXXXXXXXXXIDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIRR 327
            VVAAGWLASIAVGA XXXXXXXXXXX +DAGLSQEHADVYSEAVRRGCTLVSARV  ++GARIQA LDRY P+DP  RA DYR+ GWT FDP+APAYTPSE E+ERIRR
Sbjct:   83 VVAAGWLASIAVGAXXXXXXXXXXXXLVDAGLSQEHADVYSEAVRRGCTLVSARVAGKDGARIQAILDRYTPIDPQARARDYRRDGWTSFDPRAPAYTPSEAELERIRR 191
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: A0A1F3AJ47_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3AJ47_9PROT)

HSP 1 Score: 143 bits (360), Expect = 5.440e-41
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:   82 IDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIRRGGT 336
            +DAGLS+EHADVYSEAVRRGCTLVSARV    GAR+QA LDRY+P+DPV+R  DYR+ GWT FDPKAPAYTPSETE+ERIRR  T
Sbjct:  110 VDAGLSKEHADVYSEAVRRGCTLVSARVGGANGARLQAILDRYQPIDPVERGSDYRREGWTRFDPKAPAYTPSETELERIRRDST 194
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: UPI001C222BC0 (hypothetical protein n=2 Tax=Reyranella TaxID=445219 RepID=UPI001C222BC0)

HSP 1 Score: 123 bits (309), Expect = 2.820e-33
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    1 VVAAGWLASIAVGAAXXXXXXXXXXXXIDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIR 324
            VVAAGWLAS A  AA  XXXX      +DAG  +EHA+VYSE+VRRG TLV+ARV D + +RI+A L  Y+P+DPV R  DYRK GWT FDPKA  Y P++TE++R+R
Sbjct:   83 VVAAGWLASTAAVAAGGXXXXGIVGALVDAGTDKEHAEVYSESVRRGGTLVTARVNDADASRIEAILATYKPIDPVSRGSDYRKEGWTNFDPKAAPYRPNQTEVDRMR 190
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: UPI0002F814E6 (hypothetical protein n=1 Tax=Reyranella massiliensis TaxID=445220 RepID=UPI0002F814E6)

HSP 1 Score: 123 bits (309), Expect = 2.820e-33
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:   82 IDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIR 324
            +DAG  +EHADVY+E+VRRG TLV+ RVPD++ AR +A LD+YRPVDPV R  +YRKGGW  FDPKAP Y P++TEIER+R
Sbjct:  110 VDAGTDREHADVYAESVRRGGTLVTVRVPDQDAARAEALLDQYRPVDPVARGAEYRKGGWKTFDPKAPPYRPTDTEIERLR 190
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: A0A259MF50_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MF50_9PROT)

HSP 1 Score: 119 bits (297), Expect = 1.820e-31
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 VVAAGWLASIAVGAAXXXXXXXXXXXXIDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIR 324
            VVAAGWLAS A  AA XXXX       ++AG  +EHA+VYSEAVRRG TLV+ARVPD +  RI++ L    P+DPV R  +YR  GW  FDPKAP Y PS+TEI+R+R
Sbjct:   83 VVAAGWLASTAAVAAGXXXXGGIVGAMVEAGTDKEHAEVYSEAVRRGGTLVTARVPDGDATRIESILAASSPIDPVARGAEYRAAGWKNFDPKAPPYRPSQTEIDRMR 190
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: UPI001E539DF5 (hypothetical protein n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E539DF5)

HSP 1 Score: 117 bits (294), Expect = 6.220e-31
Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 VVAAGWLASIAVGAAXXXXXXXXXXXXIDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIRR 327
            VVAAGWLA+ AVGA XXXXXXXXXXXXI +G+ +E A V +EAVRRG TLV+ARVPD E ARI+  +  +RP+DP +RA  +R  GWT FDP++PAY P+ETEIER+RR
Sbjct:   83 VVAAGWLAATAVGAXXXXXXXXXXXXXIGSGVEKEVAAVQAEAVRRGATLVTARVPDTEVARIEGLMSVHRPIDPAERARSWRDKGWTTFDPESPAYRPNETEIERMRR 191
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: A0A6N7A1G3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7A1G3_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.800e-27
Identity = 71/109 (65.14%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:    1 VVAAGWLASIAVGAAXXXXXXXXXXXXIDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIRR 327
            VVAAGWL ++AVGA XXXXXXXXXXXX  AG+ +E A V SE+VRRG TLV+ RVPD E  RI+  L  +RP D   RA  +R  GWT FDP APAY PSETEIER+RR
Sbjct:   83 VVAAGWLVAMAVGAXXXXXXXXXXXXXXXAGVDEEEAAVLSESVRRGGTLVTVRVPDEEVGRIEGLLSIHRPTDIAARAALWRAEGWTTFDPGAPAYRPSETEIERMRR 191
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: UPI001C230514 (hypothetical protein n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C230514)

HSP 1 Score: 105 bits (263), Expect = 2.870e-26
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:    1 VVAAGWLASIAVGAAXXXXXXXXXXXXIDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIRR 327
            VVAAGWLA       XXXXXXXXXX  I +G+  E A V++EAVRRG TLV+ARVPD E  R++  +  +RP+D  +RA  +R+ GWT FDP APAY P+ETEI+R+RR
Sbjct:   83 VVAAGWLAXXXXXXXXXXXXXXXXXALIGSGMEDEVAAVHAEAVRRGATLVTARVPDTEVGRVEGLMSVHRPIDSTERAASWREEGWTTFDPNAPAYRPTETEIQRMRR 191
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: A0A521QJH3_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QJH3_9HYPH)

HSP 1 Score: 105 bits (261), Expect = 4.820e-26
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:   82 IDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIR 324
            +DAG+ ++HAD+YSEA+RRG TLV+ARV D +  R+ A L  Y P+DP  R  +YRK GW  FDPKA  Y PS+ EI+RIR
Sbjct:  110 VDAGVDRKHADIYSEAIRRGGTLVTARVRDEDADRVDAILAEYEPIDPAIRGDEYRKEGWATFDPKAEPYRPSQVEIDRIR 190
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BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Match: A0A838QXD5_9BACT (Uncharacterized protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QXD5_9BACT)

HSP 1 Score: 105 bits (261), Expect = 4.820e-26
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   82 IDAGLSQEHADVYSEAVRRGCTLVSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPSETEIERIRRG 330
            +D+G+S+EHA VYSEAVRRG TLVS +  D    ++++ L+RY+P+DPV++  DYRK GW  FDPKA  Y  +E EIERIR G
Sbjct:  110 VDSGVSEEHAHVYSEAVRRGGTLVSVKTDDARAGKVRSILERYQPMDPVRQGADYRKTGWKQFDPKAAPYELNEAEIERIRMG 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14219.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521LWJ5_9HYPH6.650e-4782.57Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A1F3AJ47_9PROT5.440e-4177.65Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI001C222BC02.820e-3360.19hypothetical protein n=2 Tax=Reyranella TaxID=4452... [more]
UPI0002F814E62.820e-3366.67hypothetical protein n=1 Tax=Reyranella massiliens... [more]
A0A259MF50_9PROT1.820e-3159.26Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
UPI001E539DF56.220e-3166.06hypothetical protein n=1 Tax=Reyranella aquatilis ... [more]
A0A6N7A1G3_9PROT1.800e-2765.14Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
UPI001C2305142.870e-2657.80hypothetical protein n=1 Tax=Reyranella sp. MMS21-... [more]
A0A521QJH3_9HYPH4.820e-2656.79Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A838QXD5_9BACT4.820e-2656.63Uncharacterized protein n=1 Tax=Pirellulales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14219contigP-wetherbeei_contig14219:4..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1205680.CAKO01000027_gene4725
Model size342
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.62e-34
EggNOG OGsCOG4572@1|root,COG4572@2|Bacteria,1NDIJ@1224|Proteobacteria,2TTIY@28211|Alphaproteobacteria
DescriptionCation transport regulator
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.511199-CDS-P-wetherbeei_contig14219:3..3451683186013.511199-CDS-P-wetherbeei_contig14219:3..345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14219 4..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14219.1.1prot_P-wetherbeei_contig14219.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14219 4..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14219.1.1

>prot_P-wetherbeei_contig14219.1.1 ID=prot_P-wetherbeei_contig14219.1.1|Name=mRNA_P-wetherbeei_contig14219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
VVAAGWLASIAVGAAAGAAAGGIVGALIDAGLSQEHADVYSEAVRRGCTL
VSARVPDREGARIQATLDRYRPVDPVQRAGDYRKGGWTCFDPKAPAYTPS
ETEIERIRRGGTT*
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mRNA from alignment at P-wetherbeei_contig14219:4..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14219.1.1 ID=mRNA_P-wetherbeei_contig14219.1.1|Name=mRNA_P-wetherbeei_contig14219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig14219:4..345+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGCGGCGGGTTGGCTGGCCAGCATCGCGGTCGGCGCGGCGGCTGG
CGCCGCGGCCGGCGGCATCGTGGGGGCGCTGATCGACGCCGGCCTGTCGC
AGGAGCACGCCGACGTCTATTCGGAAGCCGTGCGGCGCGGCTGCACCCTG
GTGAGCGCGCGCGTGCCCGACCGCGAGGGCGCCAGAATCCAGGCGACCCT
CGACCGCTACAGGCCGGTCGATCCGGTGCAGCGGGCCGGCGATTATCGCA
AGGGAGGCTGGACCTGCTTCGATCCCAAGGCGCCGGCCTATACGCCGAGC
GAGACCGAGATCGAGCGTATCCGCCGCGGCGGAACAACATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14219:4..345+

>mRNA_P-wetherbeei_contig14219.1.1 ID=mRNA_P-wetherbeei_contig14219.1.1|Name=mRNA_P-wetherbeei_contig14219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig14219:4..345+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGCGGCGGGTTGGCTGGCCAGCATCGCGGTCGGCGCGGCGGCTGG
CGCCGCGGCCGGCGGCATCGTGGGGGCGCTGATCGACGCCGGCCTGTCGC
AGGAGCACGCCGACGTCTATTCGGAAGCCGTGCGGCGCGGCTGCACCCTG
GTGAGCGCGCGCGTGCCCGACCGCGAGGGCGCCAGAATCCAGGCGACCCT
CGACCGCTACAGGCCGGTCGATCCGGTGCAGCGGGCCGGCGATTATCGCA
AGGGAGGCTGGACCTGCTTCGATCCCAAGGCGCCGGCCTATACGCCGAGC
GAGACCGAGATCGAGCGTATCCGCCGCGGCGGAACAACATGA
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