mRNA_P-wetherbeei_contig14213.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14213.2.1
Unique NamemRNA_P-wetherbeei_contig14213.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A521YVX3_9PROT (Universal stress protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YVX3_9PROT)

HSP 1 Score: 161 bits (407), Expect = 2.470e-48
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKIL+AVDGSKNS+DAV  LI HA W+ EKP V L  VHLPVPKIG  GA  SK+ + KYY +EG   +  ++K L  AG+P    +LVG IA +I  HA+A++CD+I++GTRGM+A    ++GS A KVLHIS  PVLLVK
Sbjct:    1 MKILVAVDGSKNSMDAVDCLINHADWFREKPQVELVTVHLPVPKIGGMGAAVSKSQIRKYYDDEGQARLTSAKKRLGAAGVPFEARVLVGPIAESIVDHAKAERCDIIYIGTRGMTALGKALIGSTAAKVLHISTTPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A537BDK3_9PROT (Universal stress protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BDK3_9PROT)

HSP 1 Score: 157 bits (397), Expect = 8.180e-47
Identity = 83/142 (58.45%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKILLAVDGSK+SL AV+SLIEHA WY EKP V L  VHLPVP+I    A    + + +YY  EG  A+ K++KLLD AGI ++  ILVG +A TI R A   +C++I +GTRGMSAAAN+ +GS A +V+ IS IPVLLVK
Sbjct:    1 MKILLAVDGSKHSLKAVKSLIEHADWYREKPAVELVNVHLPVPRIRGMSAVVGASQVRRYYDREGKAALSKARKLLDAAGIGYSPRILVGPVAETIVRQARLTRCELIMMGTRGMSAAANLFLGSCANRVVSISPIPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A1F3YTL9_9PROT (Usp domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YTL9_9PROT)

HSP 1 Score: 156 bits (395), Expect = 1.650e-46
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKILLAVDGS  SLDAV  LIEHA WY EKPT+ L  VHLPVPK+        K  +E+YY+EEG   +  ++K LD AGI +  SILVG IA TI  H +  +CD+I++GT G +AA NM++GS+ATKV+H+S IPVLLV+
Sbjct:    1 MKILLAVDGSTYSLDAVACLIEHADWYREKPTLELLTVHLPVPKLPRMHLVVGKNQIERYYQEEGEAMLAGAKKKLDAAGIRYNASILVGPIAETIVAHGKKTRCDLIYIGTHGRTAAGNMLLGSIATKVMHLSTIPVLLVR 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A1F4FCQ2_9PROT (Usp domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FCQ2_9PROT)

HSP 1 Score: 156 bits (395), Expect = 1.650e-46
Identity = 78/142 (54.93%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKIL+AVDGSKNSL AV+ LI+HA WY +KP V L  VHLPVPK+   G    K+ ++KYY +EG   +  ++K L  AG+P    +LVG IA TI  HA A++CD+I++GTRGMS     ++GS A KVLHIS +PVLLVK
Sbjct:    1 MKILVAVDGSKNSLSAVQCLIDHADWYRDKPQVELVTVHLPVPKLPRMGLAVGKSQIQKYYEDEGNARLAAAKKKLAAAGVPFEPRVLVGPIAETIVEHARAKRCDIIYIGTRGMSELGKAMLGSTAAKVLHISSVPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A1F4FH22_9PROT (Usp domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FH22_9PROT)

HSP 1 Score: 155 bits (393), Expect = 3.310e-46
Identity = 77/142 (54.23%), Postives = 106/142 (74.65%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MK+LLAVDGS+ SLDA R L+EH  W + +P V L  VH PVP++   G    KA +E+YY +EGA  +  ++KLL++AG+ +T  +L+G IA T+  HA++ +CD+I VG RGMSAAA+M++GSVATKVLH+S +PVLLVK
Sbjct:    1 MKVLLAVDGSEYSLDAARFLLEHLDWASARPAVELVTVHPPVPRLPGMGKVVGKAQIERYYADEGAVQLAGAKKLLERAGLNYTARVLIGPIAETLVAHAKSTRCDLILVGNRGMSAAASMLLGSVATKVLHLSAVPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A1F4B7D8_9PROT (Usp domain-containing protein n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4B7D8_9PROT)

HSP 1 Score: 155 bits (391), Expect = 6.670e-46
Identity = 81/142 (57.04%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKILLAVDGS  SLDAVR ++EH  W   +P V L  VH PVPK+   G    +A +EKYY EEGA  +  ++KLLD AG+ +   +LVG IA T+  HA+  +CDMI +G RGM+AAANM++GSVATKVLH S +PVLLVK
Sbjct:    1 MKILLAVDGSGYSLDAVRFMLEHLNWGNARPEVELITVHAPVPKLPGMGKVVGRAQIEKYYAEEGAAQLAGARKLLDGAGLKYNARVLVGPIAETLVAHAKRSRCDMILIGNRGMTAAANMLLGSVATKVLHQSGVPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A536YVX1_9PROT (Universal stress protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YVX1_9PROT)

HSP 1 Score: 154 bits (388), Expect = 1.910e-45
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKILLAVDGSK+SL AV+ LIEHAGWY E P V L  V LPVP+I   GA    + + +YY  EG  A+ K++KLLD AGI ++  +LVG +A +I R A   +CD+I +GTRGMSAAA++++GS A +V+++S IPVLLVK
Sbjct:    1 MKILLAVDGSKHSLKAVKCLIEHAGWYREPPGVELVNVRLPVPRIRGMGAVVGASQVRRYYDREGKAALSKARKLLDAAGIKYSAHVLVGPVAESIIRQARLTRCDLIMIGTRGMSAAASLLLGSCANRVVNVSPIPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A177QTD6_9PROT (Usp domain-containing protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QTD6_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.270e-43
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKILLAVDGSKNSL AV  LIEHAGWY EKP V L  VH P+PK+  F    SKA +++YY+EEG   +  ++  L+++GI H   +LVG  A TI +HA+   CD+I VGTRGM+     + GS ATKV+HI  +PVLLVK
Sbjct:    1 MKILLAVDGSKNSLAAVDCLIEHAGWYREKPVVELLTVHAPLPKLPNFRKVVSKAQIDRYYQEEGETCLAAARTRLERSGISHEARVLVGPTAETIVKHAKDTSCDLICVGTRGMTELGQALQGSTATKVVHIPPLPVLLVK 142          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A537BUP6_9PROT (Universal stress protein n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BUP6_9PROT)

HSP 1 Score: 149 bits (376), Expect = 2.270e-43
Identity = 77/141 (54.61%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLV 423
            MKILLAVDGSK SLDAV SL++HA WY E P V L  VHLP+PK+  F     K+ L+ YY+EEG   +  ++K LD AG+ +T  +LVG I  TI + A+   CD+I++GTRGMSAA+ ++ GS ATKVL++S +PVLLV
Sbjct:    1 MKILLAVDGSKYSLDAVDSLVDHADWYRESPEVELLTVHLPIPKLPGFSLAVGKSQLQSYYQEEGEARLAPAKKKLDAAGLKYTARVLVGPIGETIVKRAKESGCDLIYIGTRGMSAASALL-GSTATKVLNLSAVPVLLV 140          
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Match: A0A1F4FFP8_9PROT (Usp domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FFP8_9PROT)

HSP 1 Score: 147 bits (370), Expect = 1.030e-42
Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = 1
Query:    1 MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGAGPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHAEAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK 426
            MKILLA+DGSK SL +   LIEHA W+ EKP V L  VHLPVPK+        ++ +++YY EEG   +  ++K LD AGIP+   ILVG +A TI RHA   +CD+I +G+RGM+     ++GS ATKVLH+S +PVLL+K
Sbjct:    1 MKILLAIDGSKRSLRSADFLIEHAEWFREKPEVELVTVHLPVPKLPRMHLAVGESDIKRYYEEEGEARLAAAKKKLDAAGIPYKTRILVGTVAETIVRHASQSRCDLIVIGSRGMTELGKALIGSTATKVLHLSNLPVLLLK 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14213.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YVX3_9PROT2.470e-4857.04Universal stress protein n=1 Tax=Betaproteobacteri... [more]
A0A537BDK3_9PROT8.180e-4758.45Universal stress protein n=1 Tax=Betaproteobacteri... [more]
A0A1F3YTL9_9PROT1.650e-4657.04Usp domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4FCQ2_9PROT1.650e-4654.93Usp domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1F4FH22_9PROT3.310e-4654.23Usp domain-containing protein n=2 Tax=unclassified... [more]
A0A1F4B7D8_9PROT6.670e-4657.04Usp domain-containing protein n=4 Tax=unclassified... [more]
A0A536YVX1_9PROT1.910e-4555.63Universal stress protein n=2 Tax=Betaproteobacteri... [more]
A0A177QTD6_9PROT1.270e-4354.93Usp domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A537BUP6_9PROT2.270e-4354.61Universal stress protein n=5 Tax=Betaproteobacteri... [more]
A0A1F4FFP8_9PROT1.030e-4251.41Usp domain-containing protein n=1 Tax=Betaproteoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14213contigP-wetherbeei_contig14213:683..1111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159087.Daro_1050
PFAMsUsp
Model size429
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.93e-34
EggNOG OGsCOG0589@1|root,COG0589@2|Bacteria,1N8EJ@1224|Proteobacteria,2VUAF@28216|Betaproteobacteria,2KX5X@206389|Rhodocyclales
DescriptionUniversal stress protein family
Cds size429
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.463565-CDS-P-wetherbeei_contig14213:682..11111683186013.463565-CDS-P-wetherbeei_contig14213:682..1111Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14213 683..1111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14213.2.1prot_P-wetherbeei_contig14213.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14213 683..1111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14213.2.1

>prot_P-wetherbeei_contig14213.2.1 ID=prot_P-wetherbeei_contig14213.2.1|Name=mRNA_P-wetherbeei_contig14213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
MKILLAVDGSKNSLDAVRSLIEHAGWYAEKPTVVLTYVHLPVPKIGAFGA
GPSKATLEKYYREEGAEAIEKSQKLLDKAGIPHTDSILVGDIAATICRHA
EAQKCDMIFVGTRGMSAAANMIVGSVATKVLHISKIPVLLVK*
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mRNA from alignment at P-wetherbeei_contig14213:683..1111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14213.2.1 ID=mRNA_P-wetherbeei_contig14213.2.1|Name=mRNA_P-wetherbeei_contig14213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig14213:683..1111+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGATCCTGCTTGCGGTCGATGGTTCGAAGAATTCGCTGGATGCGGT GCGCAGCCTCATCGAGCATGCAGGCTGGTACGCCGAGAAGCCCACGGTGG TCCTGACGTATGTGCACCTGCCGGTGCCCAAGATCGGCGCGTTCGGGGCG GGCCCGTCGAAGGCCACGCTGGAAAAGTACTACCGCGAAGAGGGCGCCGA GGCGATCGAGAAATCGCAGAAGCTGCTCGACAAGGCCGGCATCCCGCACA CCGATTCGATCCTCGTCGGCGACATCGCGGCCACGATCTGCAGGCATGCC GAGGCGCAGAAGTGCGACATGATCTTCGTCGGCACGCGCGGCATGAGCGC GGCGGCCAACATGATCGTGGGCTCGGTGGCGACGAAGGTGCTGCACATCT CGAAGATCCCCGTGCTGCTGGTGAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14213:683..1111+

>mRNA_P-wetherbeei_contig14213.2.1 ID=mRNA_P-wetherbeei_contig14213.2.1|Name=mRNA_P-wetherbeei_contig14213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig14213:683..1111+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGATCCTGCTTGCGGTCGATGGTTCGAAGAATTCGCTGGATGCGGT
GCGCAGCCTCATCGAGCATGCAGGCTGGTACGCCGAGAAGCCCACGGTGG
TCCTGACGTATGTGCACCTGCCGGTGCCCAAGATCGGCGCGTTCGGGGCG
GGCCCGTCGAAGGCCACGCTGGAAAAGTACTACCGCGAAGAGGGCGCCGA
GGCGATCGAGAAATCGCAGAAGCTGCTCGACAAGGCCGGCATCCCGCACA
CCGATTCGATCCTCGTCGGCGACATCGCGGCCACGATCTGCAGGCATGCC
GAGGCGCAGAAGTGCGACATGATCTTCGTCGGCACGCGCGGCATGAGCGC
GGCGGCCAACATGATCGTGGGCTCGGTGGCGACGAAGGTGCTGCACATCT
CGAAGATCCCCGTGCTGCTGGTGAAGTAA
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