mRNA_P-wetherbeei_contig1421.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1421.3.1
Unique NamemRNA_P-wetherbeei_contig1421.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1421.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1421contigP-wetherbeei_contig1421:5165..5906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size479
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.2881842-UTR-P-wetherbeei_contig1421:5164..52911683186013.2881842-UTR-P-wetherbeei_contig1421:5164..5291Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1421 5165..5291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.2962964-CDS-P-wetherbeei_contig1421:5291..54741683186013.2962964-CDS-P-wetherbeei_contig1421:5291..5474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1421 5292..5474 +
1683186013.3043604-CDS-P-wetherbeei_contig1421:5738..59061683186013.3043604-CDS-P-wetherbeei_contig1421:5738..5906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1421 5739..5906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1421.3.1prot_P-wetherbeei_contig1421.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1421 5292..5906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1421.3.1

>prot_P-wetherbeei_contig1421.3.1 ID=prot_P-wetherbeei_contig1421.3.1|Name=mRNA_P-wetherbeei_contig1421.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MSVQADPRMRKGMEDEPPPAYTSSIPLAVAVVQQVQPQPYQQAQPYAAYP
IAYPTAQQCPQVYTQPYQPPYHQPTYAPQQLDCEQQQLQQFQQLQRYPQF
QHTPPPGSVIYEQPVGS
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mRNA from alignment at P-wetherbeei_contig1421:5165..5906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1421.3.1 ID=mRNA_P-wetherbeei_contig1421.3.1|Name=mRNA_P-wetherbeei_contig1421.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=742bp|location=Sequence derived from alignment at P-wetherbeei_contig1421:5165..5906+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGAAAAGGGGGAAAAGTACCGATTCTAGGACTAGCAAGTAGCTCGCGC
CGCAATTTCCCCGCCATTATTCTCCCAGTCTCTCTCACACCGTGGAAACC
TCTTTCTCGACGCTCACAGTCGTTGCAATGTCGGTACAGGCTGACCCAAG
AATGAGAAAAGGTATGGAGGACGAGCCGCCGCCTGCATACACATCGAGCA
TTCCATTGGCGGTGGCCGTTGTTCAGCAGGTGCAACCGCAGCCGTACCAG
CAAGCGCAGCCCTACGCCGCGTACCCGATAGCGTACCCTACCGCCCAGCA
ATGCCCGCAGGCACGCGTGCTGCTCTTTTATCAATTCCCGAGCCTAAAGT
GGGGCTGTATGCAGCTGTCTGTCATATGTTGCCGCGGCGCTGATTGATTG
TCATTCAAGTCCCGTTCTGGGCTACTTCTTTTCGTTTTGTCCTGAACTTT
TACCCTTCATGACCAAGCACTTTGATGTTTTAGGTTGTTCACTTTGATGT
TTAAGGTTGTTCACGTTGAAAGCTCCGGCCGCCTTGCTTCCCCTGGCGAT
CCGACGCTTCCCCCGAAAGCGCAGGTGTACACGCAACCGTACCAGCCGCC
GTACCATCAACCGACCTATGCGCCGCAACAGCTGGACTGTGAGCAGCAGC
AACTTCAGCAGTTCCAGCAGTTGCAGCGTTATCCGCAGTTTCAGCACACG
CCGCCGCCGGGCTCCGTCATCTACGAGCAGCCTGTCGGGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1421:5165..5906+

>mRNA_P-wetherbeei_contig1421.3.1 ID=mRNA_P-wetherbeei_contig1421.3.1|Name=mRNA_P-wetherbeei_contig1421.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig1421:5165..5906+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGTACAGGCTGACCCAAGAATGAGAAAAGGTATGGAGGACGAGCC
GCCGCCTGCATACACATCGAGCATTCCATTGGCGGTGGCCGTTGTTCAGC
AGGTGCAACCGCAGCCGTACCAGCAAGCGCAGCCCTACGCCGCGTACCCG
ATAGCGTACCCTACCGCCCAGCAATGCCCGCAGGTGTACACGCAACCGTA
CCAGCCGCCGTACCATCAACCGACCTATGCGCCGCAACAGCTGGACTGTG
AGCAGCAGCAACTTCAGCAGTTCCAGCAGTTGCAGCGTTATCCGCAGTTT
CAGCACACGCCGCCGCCGGGCTCCGTCATCTACGAGCAGCCTGTCGGGTC
C
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