mRNA_P-wetherbeei_contig14204.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14204.1.2
Unique NamemRNA_P-wetherbeei_contig14204.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: D7G3Q2_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Q2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.320e-34
Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRWAALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            +LV +QSGF+ AYL+FIA NL AL+   + PV+  C+P L ++C  + +KYL+PFSL+AEVVNL GL VV+  D E+  ++   I    W ALP VFGV+VYCFEG+GM +P+E  M N+
Sbjct:  169 ALVASQSGFATAYLVFIARNLYALFSFQKAPVIFLCVPGLVLMCLIKHLKYLAPFSLIAEVVNLTGLAVVFFDDAEFMDINHESISMAHWKALPFVFGVAVYCFEGIGMAIPIEDAMVNR 288
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: A0A835YTU8_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.870e-30
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRWAALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            SL++TQ+ FSIAY++FIA N   + G+ +  VVA C+P L  LC  R  KYL+PF++ AE VNLVG+ VV  +D++   ++   +    W ALP + GV +YCFEGMGMVL LE N  +K
Sbjct:   41 SLIVTQASFSIAYILFIARNFEQITGIAQPLVVAMCMPLLFALCLFRHAKYLAPFAMFAEAVNLVGMAVVLTTDVKTMNVNHPDVVQANWPALPFITGVFLYCFEGMGMVLSLEANALHK 160
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: A0A024G283_9STRA (Aa_trans domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G283_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.070e-28
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRW-AALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            +++ +Q+GF ++YLIFIA+N++A  G+PR+  VA CLP L V    R +K L+  +L+A+++NL GL VVY+ D E+ A +   I+ +   ++LP  FGV+ YCFEG+GMVLPLEK+M NK
Sbjct:  134 AIIFSQTGFCVSYLIFIATNVHAYLGVPREAAVAICLPLLIVFSLVRHLKQLAYAALVADIMNLTGLAVVYSVDFEFMAYNDDQIKFFGVISSLPFFFGVASYCFEGVGMVLPLEKSMRNK 254
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: F0VZW3_9STRA (Amino Acid/Auxin Permease (AAAP) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZW3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.130e-27
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRW-AALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            +++ +Q+GF ++YLIFI+SN++A   +PR+  VA CLP L V    R +K L+  +LLA+++NL GL VVY+ D E+ A +   IE +   ++LP  FGV+ YCFEG+GMVLPLE +M NK
Sbjct:  138 AIIFSQTGFCVSYLIFISSNVHAYLNVPREAAVAICLPLLVVFSLVRHLKQLAYAALLADIMNLTGLAVVYSVDFEFMAQNNSRIEFFGVISSLPFFFGVASYCFEGVGMVLPLENSMRNK 258
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: A0A8K1CFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFQ4_PYTOL)

HSP 1 Score: 108 bits (270), Expect = 4.380e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRW-AALPAVFGVSVYCFEGMGMVLPLEKNMTN 357
            +LVI+Q+GF +AYLIFI++N +    + ++ V++ C+P L      + MK L+  + LA+V+N +GL VVY +D+ Y A+  H IEA    +++P  FGV++YCFEG+GMVLPLE  M N
Sbjct:  379 ALVISQAGFCVAYLIFISTNAHQFLNVSKELVISVCMPPLVAFSLLKHMKELAYAAFLADVMNFLGLTVVYMTDLSYMAMDTHHIEAIGVVSSMPFFFGVAIYCFEGVGMVLPLENGMEN 498
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: K3X1R1_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1R1_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 6.520e-25
Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRW-AALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            SLVI+Q+GF +AYLIFIASN +    + ++ VV+ C+P L      + MK L+  ++LA+ +N +GL VVY +D+ Y AL    IE +   +++P  FGV+ YCFEG+GMVLPLE +M  K
Sbjct:  175 SLVISQTGFCVAYLIFIASNAHKFLDVSKELVVSVCVPPLIAFSLLKHMKELAFIAILADCMNFLGLAVVYTTDLSYMALDHDNIEVFGVVSSIPFFFGVASYCFEGVGMVLPLENSMQTK 295
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: A0A5D6Y5H3_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5H3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.410e-24
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAW-RWAALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            SLV++QS F IAYLIFIASN +    +PR+ VVA C P L      + M+ L+  +LLA+V+ L+GL VV   D+ Y  L++  +EA    +++P  FGV+ YCFEG+GMVLPLE +M +K
Sbjct:  158 SLVVSQSSFCIAYLIFIASNAHKFLEVPRELVVAVCAPPLVAFSLLKHMRELAFVALLADVMVLLGLAVVLWKDLAYMELNQSRVEALGALSSVPFFFGVATYCFEGVGMVLPLENSMQHK 278
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: A0A7S3DEW1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DEW1_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 1.080e-23
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNL-NALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHP------IEAWRWAALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            SLV++Q+GF +AYLIFI++N+ N +  +P   V   CLPALA+L   R +K+L+PFS+LA+VVN+VGL VV+ +  E  A  R        I  +  + +   FGV++YC+EG+GMV+P+E  M  K
Sbjct:  154 SLVVSQAGFCVAYLIFISTNIHNIIPDIPPWAVTVICLPALALLTWIRHLKHLAPFSILADVVNVVGLTVVFINYFEAMADPRDAEGTLKSITVFETSEIAFFFGVAIYCYEGVGMVIPIESTMKEK 280
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: A0A0G4H7S9_VITBC (Aa_trans domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H7S9_VITBC)

HSP 1 Score: 104 bits (259), Expect = 1.260e-23
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    4 LVITQSGFSIAYLIFIASNL-NALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIE-YAALHRHP--IEAWRWAALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            LVITQ+GF IAYLIFI  NL N    +    +V  CLP L +LC  R M++L+  SLLA+  NL GLGVVY  D+    A+ + P  +   R + LP  FGV +YCFEG+GMVLP+E +M +K
Sbjct:  291 LVITQTGFCIAYLIFIGENLANVFHFVSFGEIVMYCLPLLVLLCWLRDMRHLAWSSLLADATNLFGLGVVYFFDLHRLVAVRKAPPAVAIARSSTLPFFFGVGLYCFEGIGMVLPIENSMKDK 413
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BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Match: K3X1R2_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1R2_GLOUD)

HSP 1 Score: 101 bits (252), Expect = 6.010e-23
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:    1 SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMKYLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRW----AALPAVFGVSVYCFEGMGMVLPLEKNMTNK 360
            +L+++Q+GF++AYLIFIA+N +  + + ++ VV ACLP L VL   + +K L+  +L A+ +N  GL +VY +D     L         W    +++P  FG++ YCF G+GM+LPLEK M NK
Sbjct:  133 ALIVSQTGFAVAYLIFIATNAHTYFSVSKEAVVLACLPFLIVLSLLKHIKELAWVALAADTMNFFGLAIVYMTDFSLIDLSSARTSELNWLGTLSSIPFFFGIATYCFSGIGMILPLEKAMENK 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14204.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Q2_ECTSI1.320e-3451.67Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YTU8_9STRA2.870e-3048.33Transmembrane amino acid transporter protein-domai... [more]
A0A024G283_9STRA4.070e-2847.93Aa_trans domain-containing protein n=1 Tax=Albugo ... [more]
F0VZW3_9STRA1.130e-2747.93Amino Acid/Auxin Permease (AAAP) Family putative n... [more]
A0A8K1CFQ4_PYTOL4.380e-2545.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X1R1_GLOUD6.520e-2546.28Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
A0A5D6Y5H3_9STRA2.410e-2447.93Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
A0A7S3DEW1_9EUKA1.080e-2344.88Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A0G4H7S9_VITBC1.260e-2349.59Aa_trans domain-containing protein n=2 Tax=Vitrell... [more]
K3X1R2_GLOUD6.010e-2340.32Aa_trans domain-containing protein n=1 Tax=Globisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14204contigP-wetherbeei_contig14204:60..1263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3Q2
PFAMsAa_trans
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K10569,ko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko03410,ko04138,map03410,map04138
Hectar predicted targeting categorysignal peptide
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0009605,GO:0009607,GO:0009624,GO:0012505,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015318,GO:0015711,GO:0015801,GO:0015804,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0034220,GO:0042175,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071705,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1903825,GO:1905039
Exons3
Evalue2.16e-35
EggNOG OGsCOG0814@1|root,KOG1304@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
Cds size360
COG categoryE
BRITEko00000,ko00001,ko02000,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.099326-CDS-P-wetherbeei_contig14204:59..921683186013.099326-CDS-P-wetherbeei_contig14204:59..92Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14204 60..92 -
1683186013.1123888-CDS-P-wetherbeei_contig14204:553..7001683186013.1123888-CDS-P-wetherbeei_contig14204:553..700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14204 554..700 -
1683186013.1232047-CDS-P-wetherbeei_contig14204:1083..12631683186013.1232047-CDS-P-wetherbeei_contig14204:1083..1263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14204 1084..1263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14204.1.2prot_P-wetherbeei_contig14204.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14204 60..1263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14204.1.2

>prot_P-wetherbeei_contig14204.1.2 ID=prot_P-wetherbeei_contig14204.1.2|Name=mRNA_P-wetherbeei_contig14204.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
SLVITQSGFSIAYLIFIASNLNALWGLPRDPVVAACLPALAVLCCARQMK
YLSPFSLLAEVVNLVGLGVVYASDIEYAALHRHPIEAWRWAALPAVFGVS
VYCFEGMGMVLPLEKNMTNK
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mRNA from alignment at P-wetherbeei_contig14204:60..1263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14204.1.2 ID=mRNA_P-wetherbeei_contig14204.1.2|Name=mRNA_P-wetherbeei_contig14204.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1204bp|location=Sequence derived from alignment at P-wetherbeei_contig14204:60..1263- (Phaeothamnion wetherbeei SAG_119_79)
TCCCTCGTAATAACCCAGAGTGGCTTCAGCATCGCCTACCTAATCTTCAT
CGCATCGAACCTCAACGCCCTCTGGGGCTTGCCGCGGGATCCCGTTGTGG
CCGCGTGTCTGCCGGCACTGGCAGTGCTCTGCTGTGCGCGCCAAATGAAG
TACCTCAGCCCCTTCTCTCTGCTAGCAGAAGTGAGAAGGCGGTGGTTGAG
GGTGGACGGCTTGGCATGAAGCTCGCAAGCACTTTTTAGACATCCTCAAT
GACCTGATCGACAACTTTGCCATTAGACTTTGCAGCTGAGCGAAAGTGGA
ACAGAAAACGGTGTTGGTTCCGCTCTGTCTGTCCTGATAAGTTGGAAAAA
CTTGCGGTATGGGCGTAATGATGCGTCTTTCATCCCTTAGAACTTGGACG
GTGTGGTGAGACTTGTGTCTGTCGGCCCTCTCTTTTTCTGCATATGTGCT
GCTCAGTCTTTTTCTGCGTCTTCTCTTTTTACATCGGCCTTCCGAAACAC
GAGCGAATCTTTCATGCATCTTCCTTTTTCGAAACGGCCTTTCAAAACAT
GGCCGGCCGGCAGGTGGTGAATCTGGTGGGGCTCGGCGTGGTGTACGCGA
GTGACATCGAGTACGCGGCGCTGCATCGCCACCCCATCGAGGCATGGCGG
TGGGCGGCGCTTCCCGCCGTTTTCGGCGTCTCCGTCTACTGCTTCGAAGG
CATGGGCATGGTGAGTGCAGGGAAATAAAGTGTTTCAGTGCAAGGAAAGA
AAGTGGGCGACGAATTAATAATTTCTTTTTTGGATTTAAGAATGACGGGC
GGAGGCTTGTTGGAGATGGGCGGGCATTAGCAGGTGGTTGGTGGATGCGT
TCCGGATGTGCACCCGCCTGTTTCTCCGATCGCGTTTTTCATTTCTGTTT
GGCATGACGTGTGTACGGAGCAATGGCGCTGGTTAAACTTGGGGTTTCTT
AACTTCCCCCCGAATCGTTTCTTGTTCCTTTCCGATTCACTATTTTTCTC
TCTGTTATACGGGCGCGGCCAAGCGCTTAGCACCGTCGCATTTTGGTTTT
CCATAGCGTCCCGCCTTGTGCCTCTTCCTCTTTTATGTATCGTTTTGCCG
GAATGGTTTTGTTTGCTGGGCCGTCCATGTCGTCGCTGTCCATCCGATCG
CCCGACCGTTTGTCCCCCCAGGTGCTGCCCCTCGAGAAGAACATGACCAA
CAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14204:60..1263-

>mRNA_P-wetherbeei_contig14204.1.2 ID=mRNA_P-wetherbeei_contig14204.1.2|Name=mRNA_P-wetherbeei_contig14204.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig14204:60..1263- (Phaeothamnion wetherbeei SAG_119_79)
TCCCTCGTAATAACCCAGAGTGGCTTCAGCATCGCCTACCTAATCTTCAT
CGCATCGAACCTCAACGCCCTCTGGGGCTTGCCGCGGGATCCCGTTGTGG
CCGCGTGTCTGCCGGCACTGGCAGTGCTCTGCTGTGCGCGCCAAATGAAG
TACCTCAGCCCCTTCTCTCTGCTAGCAGAAGTGGTGAATCTGGTGGGGCT
CGGCGTGGTGTACGCGAGTGACATCGAGTACGCGGCGCTGCATCGCCACC
CCATCGAGGCATGGCGGTGGGCGGCGCTTCCCGCCGTTTTCGGCGTCTCC
GTCTACTGCTTCGAAGGCATGGGCATGGTGCTGCCCCTCGAGAAGAACAT
GACCAACAAG
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