mRNA_P-wetherbeei_contig14197.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14197.1.1
Unique NamemRNA_P-wetherbeei_contig14197.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14197contigP-wetherbeei_contig14197:336..1742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJZ9
PFAMsMyb_DNA-binding
Model size1408
Max annot lvl2759|Eukaryota
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.12e-05
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size1407
COG categoryADK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.5176873-CDS-P-wetherbeei_contig14197:335..17421683186012.5176873-CDS-P-wetherbeei_contig14197:335..1742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14197 336..1742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14197.1.1prot_P-wetherbeei_contig14197.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14197 336..1742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14197.1.1

>prot_P-wetherbeei_contig14197.1.1 ID=prot_P-wetherbeei_contig14197.1.1|Name=mRNA_P-wetherbeei_contig14197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=469bp
YSPLRKKVSAESKMEDSTAKTFLEGLESLLDGTPFLWDVAAPQELSSQDG
KHDIQKHGSGREGFGVFRMTWKEEQELNSDLPFSEFFAGGEHGIGDIQAV
ASHPIAASSVPTSRTASFRAQPPNAWGRSEQQPPPLPLYASHEAPSTIRP
SDRVPGRPSYALGYRGRAPALRHPPSEPLPNGWTPFGGGELLLSRHEQQQ
HRHPHIGFRQPFRGSYPDILPAGSDGGHRGGGGGGGGHSHHEEEFYGANY
LAVVHCDEYYPPKAENAEAESAAAARRTPPSSPRSMATLAVRPAPVTPTP
APVPMTTAPQRSRSVPSRLAEVPPSLKCEPVAVVSPLETTGGPGRPGAVL
RRVSAPGRRAGGRVPTAGKGRVAAAGDGRSGEDGSDEDGGDDDDEENGAG
SRGGRTRAPPGTSAMPATNAEAFALYRLDPAIWIIVERGAVCTEPLCDYF
CPRRKESARRHFHAICNHV
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mRNA from alignment at P-wetherbeei_contig14197:336..1742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14197.1.1 ID=mRNA_P-wetherbeei_contig14197.1.1|Name=mRNA_P-wetherbeei_contig14197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1407bp|location=Sequence derived from alignment at P-wetherbeei_contig14197:336..1742+ (Phaeothamnion wetherbeei SAG_119_79)
TATTCTCCCTTGAGGAAAAAAGTCTCTGCAGAGAGCAAAATGGAGGACTC
GACGGCCAAGACGTTCTTAGAGGGACTTGAGTCGCTGCTGGACGGCACTC
CATTCCTCTGGGATGTCGCCGCCCCGCAGGAATTGTCCTCTCAGGATGGG
AAGCACGATATTCAAAAGCATGGGAGCGGGCGAGAAGGCTTTGGAGTCTT
TCGCATGACCTGGAAGGAGGAGCAGGAGCTGAACTCGGACCTGCCGTTCA
GCGAATTCTTCGCGGGCGGCGAGCACGGAATCGGGGACATTCAAGCTGTG
GCCTCTCACCCGATCGCAGCTTCGTCCGTCCCGACCTCTCGTACGGCCTC
CTTCCGCGCCCAGCCGCCAAACGCATGGGGCCGTTCCGAGCAGCAGCCGC
CGCCGTTGCCGCTTTACGCCTCGCACGAGGCGCCTTCGACGATACGGCCG
AGCGACAGGGTACCAGGACGACCTTCATACGCGCTCGGCTACCGGGGACG
GGCCCCTGCGCTGAGGCATCCGCCGTCCGAGCCGCTGCCGAATGGGTGGA
CTCCGTTTGGAGGAGGAGAGCTGCTGCTGTCGCGGCATGAGCAGCAGCAG
CATCGCCATCCCCACATCGGCTTCAGGCAGCCGTTCCGCGGGAGCTATCC
GGATATTCTGCCGGCGGGCAGCGACGGCGGCCACCGCGGCGGGGGTGGCG
GCGGCGGCGGCCACAGTCACCACGAGGAAGAGTTTTACGGCGCAAACTAC
CTGGCGGTCGTCCACTGCGATGAATATTACCCGCCCAAGGCGGAAAATGC
GGAGGCGGAGTCCGCCGCGGCCGCGAGACGGACTCCGCCGTCATCCCCGA
GGTCGATGGCGACGCTGGCGGTGCGGCCGGCGCCAGTCACACCGACGCCA
GCGCCGGTCCCAATGACAACGGCGCCGCAACGGAGCCGGAGCGTGCCGTC
CCGCCTGGCGGAGGTGCCGCCCTCGCTCAAGTGCGAGCCGGTCGCCGTCG
TCTCGCCGCTGGAGACGACGGGCGGGCCGGGCCGCCCTGGCGCTGTGTTG
CGGCGGGTGTCGGCTCCTGGACGCCGGGCAGGCGGCCGCGTGCCAACCGC
CGGCAAGGGCAGGGTGGCGGCCGCAGGAGACGGAAGATCCGGCGAGGATG
GCAGCGACGAGGATGGCGGTGACGACGACGATGAGGAGAACGGTGCCGGC
AGCCGCGGCGGCCGGACGCGGGCGCCGCCGGGCACGAGCGCCATGCCGGC
GACGAACGCCGAGGCGTTTGCGCTCTACCGGCTGGACCCGGCGATCTGGA
TCATCGTCGAGCGCGGTGCCGTCTGCACCGAGCCGCTCTGTGACTACTTT
TGTCCCCGGCGCAAAGAGTCGGCGCGGCGGCACTTCCACGCCATCTGCAA
CCACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14197:336..1742+

>mRNA_P-wetherbeei_contig14197.1.1 ID=mRNA_P-wetherbeei_contig14197.1.1|Name=mRNA_P-wetherbeei_contig14197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1407bp|location=Sequence derived from alignment at P-wetherbeei_contig14197:336..1742+ (Phaeothamnion wetherbeei SAG_119_79)
TATTCTCCCTTGAGGAAAAAAGTCTCTGCAGAGAGCAAAATGGAGGACTC
GACGGCCAAGACGTTCTTAGAGGGACTTGAGTCGCTGCTGGACGGCACTC
CATTCCTCTGGGATGTCGCCGCCCCGCAGGAATTGTCCTCTCAGGATGGG
AAGCACGATATTCAAAAGCATGGGAGCGGGCGAGAAGGCTTTGGAGTCTT
TCGCATGACCTGGAAGGAGGAGCAGGAGCTGAACTCGGACCTGCCGTTCA
GCGAATTCTTCGCGGGCGGCGAGCACGGAATCGGGGACATTCAAGCTGTG
GCCTCTCACCCGATCGCAGCTTCGTCCGTCCCGACCTCTCGTACGGCCTC
CTTCCGCGCCCAGCCGCCAAACGCATGGGGCCGTTCCGAGCAGCAGCCGC
CGCCGTTGCCGCTTTACGCCTCGCACGAGGCGCCTTCGACGATACGGCCG
AGCGACAGGGTACCAGGACGACCTTCATACGCGCTCGGCTACCGGGGACG
GGCCCCTGCGCTGAGGCATCCGCCGTCCGAGCCGCTGCCGAATGGGTGGA
CTCCGTTTGGAGGAGGAGAGCTGCTGCTGTCGCGGCATGAGCAGCAGCAG
CATCGCCATCCCCACATCGGCTTCAGGCAGCCGTTCCGCGGGAGCTATCC
GGATATTCTGCCGGCGGGCAGCGACGGCGGCCACCGCGGCGGGGGTGGCG
GCGGCGGCGGCCACAGTCACCACGAGGAAGAGTTTTACGGCGCAAACTAC
CTGGCGGTCGTCCACTGCGATGAATATTACCCGCCCAAGGCGGAAAATGC
GGAGGCGGAGTCCGCCGCGGCCGCGAGACGGACTCCGCCGTCATCCCCGA
GGTCGATGGCGACGCTGGCGGTGCGGCCGGCGCCAGTCACACCGACGCCA
GCGCCGGTCCCAATGACAACGGCGCCGCAACGGAGCCGGAGCGTGCCGTC
CCGCCTGGCGGAGGTGCCGCCCTCGCTCAAGTGCGAGCCGGTCGCCGTCG
TCTCGCCGCTGGAGACGACGGGCGGGCCGGGCCGCCCTGGCGCTGTGTTG
CGGCGGGTGTCGGCTCCTGGACGCCGGGCAGGCGGCCGCGTGCCAACCGC
CGGCAAGGGCAGGGTGGCGGCCGCAGGAGACGGAAGATCCGGCGAGGATG
GCAGCGACGAGGATGGCGGTGACGACGACGATGAGGAGAACGGTGCCGGC
AGCCGCGGCGGCCGGACGCGGGCGCCGCCGGGCACGAGCGCCATGCCGGC
GACGAACGCCGAGGCGTTTGCGCTCTACCGGCTGGACCCGGCGATCTGGA
TCATCGTCGAGCGCGGTGCCGTCTGCACCGAGCCGCTCTGTGACTACTTT
TGTCCCCGGCGCAAAGAGTCGGCGCGGCGGCACTTCCACGCCATCTGCAA
CCACGTC
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