mRNA_P-wetherbeei_contig14185.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14185.1.1
Unique NamemRNA_P-wetherbeei_contig14185.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14185.1.1 vs. uniprot
Match: D7G3J6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.230e-19
Identity = 65/158 (41.14%), Postives = 85/158 (53.80%), Query Frame = 1 
Query:  184 STASLSCCRPRHYGNPLLSPRRPRHEGRSSTRMRAFDEEKDXXXXXXXXXELFIGDVVEIKE--KDGNTLGLAAYTGDGLLHRLLTRSSEAPNLFFYDEESDSILASPGL--IHRVLQDNVTIQQRIVADRLSNPHAEHAEDCFVIDGGLSEGVVVKV 645
            +TA+ S  RPR         RRPR     +T + A D E            L   DVVE +    D ++L LA+Y G+G L  LLTR+   PNLFF+DEE+  +  S G   I RVL D V   QRIV DR+ NPH E AEDCF+++G +    V++V
Sbjct:   13 TTATSSSLRPR-------CRRRPR----PTTALAAEDSEATRSAKNGWEGSLLELDVVEYRSGPDDESSLELASYIGEGKLQPLLTRTESGPNLFFHDEEAQPVSLSGGSCRIVRVL-DEVYFSQRIVEDRVKNPHGEEAEDCFLLEG-IDPATVIRV 157
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BLAST of mRNA_P-wetherbeei_contig14185.1.1 vs. uniprot
Match: A0A7S3Z8V2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8V2_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 4.690e-7
Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:  370 KDGNTLGLAAYTGDGLLHRLLTRSSEAPNLFFYDEESDSI-LASPGLIHRVLQDNVTIQQRIVADRLSNPHAEHAEDCFVI 609
            +DG T   A    D  + RL  +  E+PN FF DE+ D   +   GLI   +       QR+V DR+SNPH EHAEDC+++
Sbjct:   84 RDGGTEMCAVVLDDLRVQRLTAKDEESPNEFFVDEDEDPADVKFDGLIDLKIVP-AYYSQRMVDDRISNPHGEHAEDCWML 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3J6_ECTSI4.230e-1941.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Z8V2_9EUKA4.690e-740.74Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14185contigP-wetherbeei_contig14185:473..1143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size671
Hectar predicted targeting categorychloroplast
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_004890.1
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.060431-UTR-P-wetherbeei_contig14185:472..4771683186012.060431-UTR-P-wetherbeei_contig14185:472..477Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14185 473..477 -
1683186012.0794306-UTR-P-wetherbeei_contig14185:1032..11431683186012.0794306-UTR-P-wetherbeei_contig14185:1032..1143Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14185 1033..1143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.0708106-CDS-P-wetherbeei_contig14185:477..10321683186012.0708106-CDS-P-wetherbeei_contig14185:477..1032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14185 478..1032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14185.1.1prot_P-wetherbeei_contig14185.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14185 478..1032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14185.1.1

>prot_P-wetherbeei_contig14185.1.1 ID=prot_P-wetherbeei_contig14185.1.1|Name=mRNA_P-wetherbeei_contig14185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
MNFLLCSGLLSLVIEVRAFLPSPSSTASLSCCRPRHYGNPLLSPRRPRHE
GRSSTRMRAFDEEKDEEEEEREEEELFIGDVVEIKEKDGNTLGLAAYTGD
GLLHRLLTRSSEAPNLFFYDEESDSILASPGLIHRVLQDNVTIQQRIVAD
RLSNPHAEHAEDCFVIDGGLSEGVVVKVIEGSGH*
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mRNA from alignment at P-wetherbeei_contig14185:473..1143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14185.1.1 ID=mRNA_P-wetherbeei_contig14185.1.1|Name=mRNA_P-wetherbeei_contig14185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=671bp|location=Sequence derived from alignment at P-wetherbeei_contig14185:473..1143- (Phaeothamnion wetherbeei SAG_119_79)
AGAAGGCAGTGAGAGAGGACAAAGGGGGCAGTACCTTTGCTTGCAGAAGT
TGAAAAAACGCTCTCACCACAAGCAATTTTGCCACATCTGGCTGTAAGCC
GATCGAGCGTCATGAATTTCTTGCTCTGTTCAGGGCTCCTCTCCCTCGTG
ATCGAGGTTCGCGCTTTTCTTCCCTCCCCTTCCTCCACCGCTTCGCTCAG
CTGCTGTCGACCAAGACACTACGGCAACCCCCTTCTTTCTCCGCGCCGAC
CAAGACATGAAGGCCGCAGCAGTACGCGAATGAGGGCATTCGACGAAGAA
AAAGATGAAGAAGAAGAAGAAAGAGAAGAAGAAGAACTCTTTATCGGTGA
CGTCGTCGAGATCAAGGAAAAGGATGGCAACACTCTTGGCTTGGCGGCGT
ATACTGGAGATGGGCTTTTGCATCGCCTGTTAACAAGAAGCAGCGAGGCT
CCAAATCTCTTCTTTTACGACGAAGAGAGCGATTCGATATTGGCATCTCC
AGGCCTGATTCACCGGGTGCTGCAAGATAACGTGACGATCCAGCAACGAA
TCGTTGCGGATCGCCTCTCCAACCCGCACGCTGAGCACGCGGAAGATTGT
TTTGTGATAGACGGCGGGTTGAGCGAAGGCGTTGTGGTTAAGGTAATTGA
GGGTTCTGGCCATTAATGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14185:473..1143-

>mRNA_P-wetherbeei_contig14185.1.1 ID=mRNA_P-wetherbeei_contig14185.1.1|Name=mRNA_P-wetherbeei_contig14185.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig14185:473..1143- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTTCTTGCTCTGTTCAGGGCTCCTCTCCCTCGTGATCGAGGTTCG
CGCTTTTCTTCCCTCCCCTTCCTCCACCGCTTCGCTCAGCTGCTGTCGAC
CAAGACACTACGGCAACCCCCTTCTTTCTCCGCGCCGACCAAGACATGAA
GGCCGCAGCAGTACGCGAATGAGGGCATTCGACGAAGAAAAAGATGAAGA
AGAAGAAGAAAGAGAAGAAGAAGAACTCTTTATCGGTGACGTCGTCGAGA
TCAAGGAAAAGGATGGCAACACTCTTGGCTTGGCGGCGTATACTGGAGAT
GGGCTTTTGCATCGCCTGTTAACAAGAAGCAGCGAGGCTCCAAATCTCTT
CTTTTACGACGAAGAGAGCGATTCGATATTGGCATCTCCAGGCCTGATTC
ACCGGGTGCTGCAAGATAACGTGACGATCCAGCAACGAATCGTTGCGGAT
CGCCTCTCCAACCCGCACGCTGAGCACGCGGAAGATTGTTTTGTGATAGA
CGGCGGGTTGAGCGAAGGCGTTGTGGTTAAGGTAATTGAGGGTTCTGGCC
ATTAA
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