prot_P-wetherbeei_contig14183.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig14183.1.1
Unique Nameprot_P-wetherbeei_contig14183.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length61
Homology
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.960e-21
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    6 VSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            VS+ITNDGRN+VG  RGHD  INV+L+ C ERV+S  A VE VPLGLYI+RGDN+
Sbjct:   13 VSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNI 67          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: L1JS17_GUITC (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JS17_GUITC)

HSP 1 Score: 86.7 bits (213), Expect = 7.970e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    6 VSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            VS+ITNDGRN++GTL+G DQ++NV+LE C ERVFS  A VEQV LGLYI+RGDN+
Sbjct:   13 VSIITNDGRNIIGTLKGLDQKLNVILEECYERVFSKEAGVEQVTLGLYIVRGDNI 67          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A0M0JV94_9EUKA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JV94_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.610e-20
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            Y  ++V ++TNDGRN+VG L+G DQ  NV+LE C ERVFS  A VEQV LGLYI+RGDN+
Sbjct:    8 YVDKVVQIVTNDGRNIVGVLKGFDQTTNVILEDCNERVFSSTAGVEQVALGLYIVRGDNI 67          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A0H5RNA2_9EUKA (U6 snRNA-associated Sm-like protein LSm8 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RNA2_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.110e-20
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    5 LVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            +VSVITNDGRNL+G LRG DQ IN+VLE C ERV+S  A VEQV LGLY++RGDN+
Sbjct:   35 VVSVITNDGRNLIGRLRGFDQCINIVLEECHERVYSTTAGVEQVVLGLYVVRGDNI 90          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A0G4IR77_PLABS (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IR77_PLABS)

HSP 1 Score: 85.1 bits (209), Expect = 3.150e-20
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    5 LVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            +VSVITNDGRN+VG L+G DQ IN+VLE C ERV+S  A VEQV LGLY+IRGDN+
Sbjct:   11 VVSVITNDGRNIVGRLKGFDQCINIVLEECHERVYSTTAGVEQVVLGLYVIRGDNI 66          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.180e-20
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    5 LVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            ++ VITNDGRN+VG L+G DQ  N++L+ C ERVFS  A VEQVPLGLYI+RGDN+
Sbjct:   36 VICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNI 91          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A444TUL9_ARMVU (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TUL9_ARMVU)

HSP 1 Score: 84.3 bits (207), Expect = 6.530e-20
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            Y   LVSVIT+DGRN+VGTL+G+DQ +N++L+ C ERV+S    VEQV LGLYIIRGDN+
Sbjct:    8 YVNHLVSVITSDGRNIVGTLKGYDQTVNLILDECHERVYSTNRGVEQVILGLYIIRGDNV 67          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A2P2I2Z4_9CRUS (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I2Z4_9CRUS)

HSP 1 Score: 84.3 bits (207), Expect = 6.530e-20
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            Y   LVSVIT DGRN+VGTL+G+DQ INV+L+ C ERV+S    VEQV LGLYIIRGDN+
Sbjct:    8 YVNHLVSVITADGRNIVGTLKGYDQSINVILDECHERVYSSNRGVEQVILGLYIIRGDNV 67          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A7S3BPJ4_9EUKA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BPJ4_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-19
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            Y  ++V ++TNDGRN+VG L+G DQ  NV+L+ C ERVFS  A VEQV LGLYI+RGDN+
Sbjct:   33 YVDKVVQIVTNDGRNIVGVLKGFDQTTNVILDECHERVFSTTAGVEQVVLGLYIVRGDNI 92          
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A7S1NW03_9EUGL (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NW03_9EUGL)

HSP 1 Score: 82.8 bits (203), Expect = 2.880e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    6 VSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 60
            VSVITNDGR++VGTLRG DQ +N+++E   ERV+S  A VEQVPLGL++IRGDN+
Sbjct:   13 VSVITNDGRHIVGTLRGFDQCVNIIIEDSHERVYSTSAGVEQVPLGLFVIRGDNL 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJ72_9STRA3.960e-2169.09U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
L1JS17_GUITC7.970e-2170.91U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=G... [more]
A0A0M0JV94_9EUKA1.610e-2063.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=C... [more]
A0A0H5RNA2_9EUKA2.110e-2071.43U6 snRNA-associated Sm-like protein LSm8 (Fragment... [more]
A0A0G4IR77_PLABS3.150e-2071.43U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]
W7TRW1_9STRA6.180e-2066.07U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=M... [more]
A0A444TUL9_ARMVU6.530e-2065.00U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]
A0A2P2I2Z4_9CRUS6.530e-2068.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=H... [more]
A0A7S3BPJ4_9EUKA1.810e-1961.67U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=H... [more]
A0A7S1NW03_9EUGL2.880e-1967.27U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..60
e-value: 0.0026
score: 26.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..59
e-value: 5.2E-14
score: 51.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..60
e-value: 1.6E-17
score: 64.7
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 5..59
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 5..59
IPR034103Sm-like protein Lsm8CDDcd01727LSm8coord: 6..60
e-value: 7.78874E-28
score: 93.3592
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14183contigP-wetherbeei_contig14183:617..1117 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14183.1.1mRNA_P-wetherbeei_contig14183.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig14183 617..1117 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig14183.1.1 ID=prot_P-wetherbeei_contig14183.1.1|Name=mRNA_P-wetherbeei_contig14183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPL
GLYIIRGDNM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034103Lsm8
IPR010920LSM_dom_sf