mRNA_P-wetherbeei_contig14183.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14183.1.1
Unique NamemRNA_P-wetherbeei_contig14183.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.960e-21
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   16 VSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            VS+ITNDGRN+VG  RGHD  INV+L+ C ERV+S  A VE VPLGLYI+RGDN+
Sbjct:   13 VSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNI 67
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: L1JS17_GUITC (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JS17_GUITC)

HSP 1 Score: 86.7 bits (213), Expect = 7.970e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   16 VSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            VS+ITNDGRN++GTL+G DQ++NV+LE C ERVFS  A VEQV LGLYI+RGDN+
Sbjct:   13 VSIITNDGRNIIGTLKGLDQKLNVILEECYERVFSKEAGVEQVTLGLYIVRGDNI 67
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A0M0JV94_9EUKA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JV94_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.610e-20
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            Y  ++V ++TNDGRN+VG L+G DQ  NV+LE C ERVFS  A VEQV LGLYI+RGDN+
Sbjct:    8 YVDKVVQIVTNDGRNIVGVLKGFDQTTNVILEDCNERVFSSTAGVEQVALGLYIVRGDNI 67
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A0H5RNA2_9EUKA (U6 snRNA-associated Sm-like protein LSm8 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RNA2_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.110e-20
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 LVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            +VSVITNDGRNL+G LRG DQ IN+VLE C ERV+S  A VEQV LGLY++RGDN+
Sbjct:   35 VVSVITNDGRNLIGRLRGFDQCINIVLEECHERVYSTTAGVEQVVLGLYVVRGDNI 90
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A0G4IR77_PLABS (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IR77_PLABS)

HSP 1 Score: 85.1 bits (209), Expect = 3.150e-20
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 LVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            +VSVITNDGRN+VG L+G DQ IN+VLE C ERV+S  A VEQV LGLY+IRGDN+
Sbjct:   11 VVSVITNDGRNIVGRLKGFDQCINIVLEECHERVYSTTAGVEQVVLGLYVIRGDNI 66
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.180e-20
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   13 LVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            ++ VITNDGRN+VG L+G DQ  N++L+ C ERVFS  A VEQVPLGLYI+RGDN+
Sbjct:   36 VICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNI 91
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BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A444TUL9_ARMVU (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TUL9_ARMVU)

HSP 1 Score: 84.3 bits (207), Expect = 6.530e-20
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            Y   LVSVIT+DGRN+VGTL+G+DQ +N++L+ C ERV+S    VEQV LGLYIIRGDN+
Sbjct:    8 YVNHLVSVITSDGRNIVGTLKGYDQTVNLILDECHERVYSTNRGVEQVILGLYIIRGDNV 67
[Close]
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A2P2I2Z4_9CRUS (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I2Z4_9CRUS)

HSP 1 Score: 84.3 bits (207), Expect = 6.530e-20
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            Y   LVSVIT DGRN+VGTL+G+DQ INV+L+ C ERV+S    VEQV LGLYIIRGDN+
Sbjct:    8 YVNHLVSVITADGRNIVGTLKGYDQSINVILDECHERVYSSNRGVEQVILGLYIIRGDNV 67
[Close]
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A7S3BPJ4_9EUKA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BPJ4_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-19
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            Y  ++V ++TNDGRN+VG L+G DQ  NV+L+ C ERVFS  A VEQV LGLYI+RGDN+
Sbjct:   33 YVDKVVQIVTNDGRNIVGVLKGFDQTTNVILDECHERVFSTTAGVEQVVLGLYIVRGDNI 92
[Close]
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Match: A0A7S1NW03_9EUGL (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NW03_9EUGL)

HSP 1 Score: 82.8 bits (203), Expect = 2.880e-19
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   16 VSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPLGLYIIRGDNM 180
            VSVITNDGR++VGTLRG DQ +N+++E   ERV+S  A VEQVPLGL++IRGDN+
Sbjct:   13 VSVITNDGRHIVGTLRGFDQCVNIIIEDSHERVYSTSAGVEQVPLGLFVIRGDNL 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJ72_9STRA3.960e-2169.09U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
L1JS17_GUITC7.970e-2170.91U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=G... [more]
A0A0M0JV94_9EUKA1.610e-2063.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=C... [more]
A0A0H5RNA2_9EUKA2.110e-2071.43U6 snRNA-associated Sm-like protein LSm8 (Fragment... [more]
A0A0G4IR77_PLABS3.150e-2071.43U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]
W7TRW1_9STRA6.180e-2066.07U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=M... [more]
A0A444TUL9_ARMVU6.530e-2065.00U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]
A0A2P2I2Z4_9CRUS6.530e-2068.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=H... [more]
A0A7S3BPJ4_9EUKA1.810e-1961.67U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=H... [more]
A0A7S1NW03_9EUGL2.880e-1967.27U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14183contigP-wetherbeei_contig14183:617..1117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog227086.JGI_V11_52784
Preferred nameLSM8
PFAMsLSM
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K12627
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005688,GO:0005689,GO:0005697,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030620,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034708,GO:0034709,GO:0034719,GO:0036211,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0070034,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:0120115,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Exons3
Evalue9.21e-22
EggNOG OGsKOG1784@1|root,KOG1784@2759|Eukaryota
Ec32 ortholog descriptionsimilar to U6 snRNA-associated Sm-like protein LSm8 isoform 2
Ec32 orthologEc-12_002120.1
DescriptionmRNA splicing, via spliceosome
Cds size183
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186011.9868963-CDS-P-wetherbeei_contig14183:616..6581683186011.9868963-CDS-P-wetherbeei_contig14183:616..658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14183 617..658 -
1683186012.004312-CDS-P-wetherbeei_contig14183:867..9571683186012.004312-CDS-P-wetherbeei_contig14183:867..957Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14183 868..957 -
1683186012.0142064-CDS-P-wetherbeei_contig14183:1066..11171683186012.0142064-CDS-P-wetherbeei_contig14183:1066..1117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14183 1067..1117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14183.1.1prot_P-wetherbeei_contig14183.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14183 617..1117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14183.1.1

>prot_P-wetherbeei_contig14183.1.1 ID=prot_P-wetherbeei_contig14183.1.1|Name=mRNA_P-wetherbeei_contig14183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
YSAELVSVITNDGRNLVGTLRGHDQRINVVLEGCKERVFSLVAPVEQVPL
GLYIIRGDNM*
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mRNA from alignment at P-wetherbeei_contig14183:617..1117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14183.1.1 ID=mRNA_P-wetherbeei_contig14183.1.1|Name=mRNA_P-wetherbeei_contig14183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig14183:617..1117- (Phaeothamnion wetherbeei SAG_119_79)
TACTCCGCAGAACTCGTCTCTGTCATCACGAACGACGGACGCAATCTCGT
GGTGCGTTTTTAGTCCCGCCGTGATCTCTGATGGGGGGTGTTGTGATCGC
ATGCAGCTCCTTTCCCTTCACAACTCCCTTTTTCTGTCCTTTCTTTTCAC
CGTATCGCAGGGCACACTTCGCGGCCACGACCAGAGAATCAATGTGGTAT
TAGAAGGCTGCAAGGAACGAGTGTTTTCGCTGGTGGCTCCAGTGGAGCAG
GTAAAAGACGAGCGTCCCCTTTCACCAAAAGGCGATATCATCACAAAAAC
TCCACTGGACTGCTGCGCTTTATTGGAACCCAGCTGGAATGCTTTTTTCT
CTTATTCGATTTCGGGCTGTTGCTACACCTGAAGCCTCTTCTTGTCCGCC
CGGCTTCTCTCATGCCCATTTTCGGCCTTGTAATCGGCGACGGCGACGAC
GCTACACAGGTGCCACTAGGGCTCTATATCATCAGAGGGGACAATATGTA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14183:617..1117-

>mRNA_P-wetherbeei_contig14183.1.1 ID=mRNA_P-wetherbeei_contig14183.1.1|Name=mRNA_P-wetherbeei_contig14183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig14183:617..1117- (Phaeothamnion wetherbeei SAG_119_79)
TACTCCGCAGAACTCGTCTCTGTCATCACGAACGACGGACGCAATCTCGT
GGGCACACTTCGCGGCCACGACCAGAGAATCAATGTGGTATTAGAAGGCT
GCAAGGAACGAGTGTTTTCGCTGGTGGCTCCAGTGGAGCAGGTGCCACTA
GGGCTCTATATCATCAGAGGGGACAATATGTAA
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