mRNA_P-wetherbeei_contig10346.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10346.2.1
Unique NamemRNA_P-wetherbeei_contig10346.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A835Z5R8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.370e-16
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  333 LMLLFGTVFIATGARLWFHEGTER--AYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDDD 533
            LML+ G+     GA LW  +  ER  AY L++IG IL LPGSYAS NL GAY+GW G+ Y  IPSYDDD
Sbjct:   74 LMLVGGSALSLAGAALWLLQPAERERAYALLLIGGILFLPGSYASVNLFGAYMGWPGYSYDAIPSYDDD 142          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: W7U4P6_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4P6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.140e-14
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  276 PRYVPERPPSPPKTTIAATLMLLFGTVFIATGARLWFH---EGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            PR  P R P      +AA LML+ GT+ + TG  + +H   +  ER   ++++G++L +PGSYAS+ L GA+ GW G+ Y  IPSYDD
Sbjct:   46 PRRRPGRGPXXXXXXLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPSYDD 133          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A5D6XII8_9STRA (Transmembrane protein 230 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XII8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.280e-12
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            P +T +AA  +   G+V I    R+   +G  R    +++G I  +PGSYASY L G+Y GW G+DY  IPSYDD
Sbjct:   43 PVRTGMAAASLFALGSVLIFVSTRIGL-DGEHRGLSFLILGLIAFIPGSYASYQLYGSYKGWKGYDYSQIPSYDD 116          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A7S3H8Q2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Q2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.680e-12
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATG-----ARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            PPKTTI A L    G  F+A G     A +W H G +R   ++++G ++ +PGSYA   ++G + GW G+DY  +PSYD+
Sbjct:   47 PPKTTIVAFLFFFGGLFFLAFGLSVLLAHIWKH-GQDRGIAMIVLGGLMFIPGSYAVTIIVGTWYGWRGYDYSQLPSYDE 125          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: K3X3J5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3J5_GLOUD)

HSP 1 Score: 71.6 bits (174), Expect = 5.820e-12
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            P +T +AA  +   G++ I    R+   +G  R    +++G I  +PGSYASY L G+Y GW G+DY  IPSYDD
Sbjct:   53 PIRTGLAAVSLFTLGSIMIFASTRIGL-DGEHRGLSFLILGLIAFIPGSYASYQLYGSYKGWKGYDYSQIPSYDD 126          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A8K1FTP9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTP9_PYTOL)

HSP 1 Score: 67.4 bits (163), Expect = 1.830e-10
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            P +T IAA ++   G+V I    R+   +G +R     ++G I  +PGSYA+  L G++ GW G+DY  IPSYDD
Sbjct:   48 PIRTGIAAIVLFTLGSVLIWVSTRIGL-DGEQRGLSFFILGLIAFIPGSYATVQLYGSFKGWKGYDYSQIPSYDD 121          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A1V9YR85_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR85_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.950e-10
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            P +T +AA ++   G+V +     L+  +G  R     ++G I  +PGSYA+  L GAY GW G+DY  +PSYDD
Sbjct:   42 PIRTGLAAVVLFTIGSVLLYVST-LFGLDGERRGLSFFVLGLITFIPGSYATTQLYGAYKGWPGYDYSQLPSYDD 115          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A6G0WPK7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPK7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.710e-10
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            P +T +AA  +   G+V +    R    +  +R     ++G I  +PGSYA+  L GAY GW G+DY  +PSYDD
Sbjct:   37 PIRTAMAAVTLFTLGSVLLYVSTRFGLDD-EQRGLSFFILGLITFIPGSYATTQLYGAYKGWPGYDYSQVPSYDD 110          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A6S8XXG7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8XXG7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-9
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  306 PPKTTIAATLMLLFGTVFIATGA-RLWFHEGTERAYG---LMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDDD*L 539
            PP+T +AA  +   G V I TG    W+  G +  Y    L ++G I  +PGSYA++NL GA+  + GF+Y  +PS+DD  L
Sbjct:   28 PPRTALAALFLTTVGLVVIITGIYEKWYDVGPDVPYHYFTLFLLGFITFVPGSYATFNLWGAFRRYPGFEYDQVPSWDDQAL 109          
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Match: A0A5A8CLB8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLB8_CAFRO)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-9
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  315 TTIAATLMLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYLGWDGFDYRDIPSYDD 530
            TT+ A  +L+ GTV +  G      +GT+R+  ++++G++  +PGSYAS+ LLGA   W  + Y  +PSYDD
Sbjct:   18 TTLMAVFLLVAGTVLLGIGIP-ELAQGTDRSISMVVLGSLCFIPGSYASWILLGACQRWRNYRYDQLPSYDD 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10346.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5R8_9STRA2.370e-1657.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U4P6_9STRA5.140e-1443.18Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A5D6XII8_9STRA3.280e-1244.00Transmembrane protein 230 n=1 Tax=Pythium brassicu... [more]
A0A7S3H8Q2_9STRA5.680e-1241.25Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3X3J5_GLOUD5.820e-1242.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FTP9_PYTOL1.830e-1041.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YR85_9STRA7.950e-1040.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WPK7_9STRA9.710e-1038.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6S8XXG7_9STRA1.340e-940.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5A8CLB8_CAFRO2.040e-940.28Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10346contigP-wetherbeei_contig10346:1032..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000020092
PFAMsDUF872
Model size889
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue5.3e-13
EggNOG OGs2CXP8@1|root,2S4M2@2759|Eukaryota,1MHQV@121069|Pythiales
DescriptionTransmembrane protein. Source PGD
Cds size201
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.7224863-UTR-P-wetherbeei_contig10346:1031..13661683185864.7224863-UTR-P-wetherbeei_contig10346:1031..1366Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10346 1032..1366 +
1683185864.7512524-UTR-P-wetherbeei_contig10346:2011..23641683185864.7512524-UTR-P-wetherbeei_contig10346:2011..2364Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10346 2012..2364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.7321455-CDS-P-wetherbeei_contig10346:1366..14661683185864.7321455-CDS-P-wetherbeei_contig10346:1366..1466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10346 1367..1466 +
1683185864.7398176-CDS-P-wetherbeei_contig10346:1910..20111683185864.7398176-CDS-P-wetherbeei_contig10346:1910..2011Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10346 1911..2011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10346.2.1prot_P-wetherbeei_contig10346.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10346 1367..2011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10346.2.1

>prot_P-wetherbeei_contig10346.2.1 ID=prot_P-wetherbeei_contig10346.2.1|Name=mRNA_P-wetherbeei_contig10346.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MLLFGTVFIATGARLWFHEGTERAYGLMMIGAILLLPGSYASYNLLGAYL
GWDGFDYRDIPSYDDD*
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mRNA from alignment at P-wetherbeei_contig10346:1032..2364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10346.2.1 ID=mRNA_P-wetherbeei_contig10346.2.1|Name=mRNA_P-wetherbeei_contig10346.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1333bp|location=Sequence derived from alignment at P-wetherbeei_contig10346:1032..2364+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTTTTCTGCTTTTTTTCACATCCACAAGCGGCGCGCGGCGGAACACT TCGAGAAAGGCATGGCGGCCCGGACGAGAAGAGCGGGCGAGCAGGATGGC GTCGAGGTGAGAGGCGCAACACGCTGCCTGCAACTGTGCAAAGCAAAAAT CGCACTCAAAACTCTAATGTGTATCCTCCGCATTCGCTCTCTTTTGGCTT GCTATAACGGAGCAGCTGCCGTCGCAGAAGGAGCAGCTGCTGAATCCGCA ACGTCCTACGCCTCCGCGGTACCGCCCGCGATATGTGCCTGAGAGGCCAC CGTCCCCGCCAAAGACGACCATCGCGGCGACGCTGATGCTTCTGTTCGGG ACAGTCTTCATTGCAACAGGGGCACGCCTCTGGTTTCACGAGGGTACGGA GCGCGCTTACGGCCTCATGATGATCGGAGCCATACGTAAGTGTTTGGTTG GTTGGAAAAAGGAAACCATGTGAAAGAGGTGGAAGCTTTTGAGACTTGTG TGTATTTTTTTGTAGGTCCGGTGCCTACTTCTATTGCGGTTCGCTGTTCT CTTATTCATGGCGCTACTCGTTTTGCTGATGGGTGATTTTTCGGCAGGAC AAGGTGTGCTGTGCGCTAAGATAGAATACCCCCTTTCTCCGGTGTTGCTC GTAATCCGTCTCAAAGGTTCGTTCTTCCCAAGGTGCTGACTTAAAAAGCG CCTTGTTTTATTCTTTTTCTCGAAGCAGCATGTTTTTTCGTTCGGTATGC CAGCTGTTTCTTTCAATCCTCATTCCGCGCCCGCCTCCCTTTTGTACCCG CTTTCTTTGCGCGAAAATATCTTTGCTGGTCTCGTCCGTGGCTCGGCCGT GTTCGTGCGTGCCGGCGGCATCGGTGCAGTGTTGCTCCCGGGCAGCTACG CTTCATACAACCTGCTCGGTGCGTACTTGGGATGGGATGGCTTTGACTAC CGAGACATTCCGTCCTATGACGACGATTGACTATTGACCGGGACGGCGAT GCCCCTTCGGAGACCAGTAGAGGTAGAGCTGCCTTCAGGCCACGTGGCGG GTTGGACCTGCCTGCATGGTGCCTGCCGAGGTTGGTCGTACAAAAATGAT ACCTTCCTCATGCCCGCTTTAAGCGACGACACCGGTTCTACAAAGAAGCA ACGGCGTTTGTGTCAAAACGAATTCCAGAGAAGGAAGGAGCTGCAGTAAT AAGAGCTGTGCCACATGTGCGTTGCTTACTTGGTTAATTGCCCTCCTTTC TTGAGGTCATTGTTCGATATCCTCCTACGATTGTGATTTTTGCTGTCCTT TTCCGGCCAGCGCATCGCTTGCCCTCTACAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10346:1032..2364+

>mRNA_P-wetherbeei_contig10346.2.1 ID=mRNA_P-wetherbeei_contig10346.2.1|Name=mRNA_P-wetherbeei_contig10346.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig10346:1032..2364+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCTGTTCGGGACAGTCTTCATTGCAACAGGGGCACGCCTCTGGTT
TCACGAGGGTACGGAGCGCGCTTACGGCCTCATGATGATCGGAGCCATAC
TGTTGCTCCCGGGCAGCTACGCTTCATACAACCTGCTCGGTGCGTACTTG
GGATGGGATGGCTTTGACTACCGAGACATTCCGTCCTATGACGACGATTG
A
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