mRNA_P-wetherbeei_contig14158.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14158.1.1
Unique NamemRNA_P-wetherbeei_contig14158.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Match: D7G8P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.650e-21
Identity = 66/209 (31.58%), Postives = 99/209 (47.37%), Query Frame = 2
Query:   29 EDDVLLMLLHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFGKNNITVLDTREELPATFSIGVEPDEVTRLTQEAKRLAGQPLCPSGAETMETADAEPGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFADAASLMAEGPGFGSGSWALEDGGDAVKITDPLQLFGGLVPPPLRKAKKNFAGVLELTIAAANMAQRVFMLER 655
            ED  L  LL A+D+LH +R+E+H CLKQGF N+ +AR +  G+N+++VLDTREE  A  +I +E D      QE++ +  +         +   D            R+R        G G      ++L                         L+   DA    D + LF  LVPPPLRK+KKNF  V++  + A+N+A R+  L++
Sbjct:    3 EDAALSALLTALDDLHNIRNEMHTCLKQGFLNMARARRS-MGRNSVSVLDTREEYAAEVTIAIEEDTSEGRLQESRSMFSRNRVEPAGSAVVIRDGS---------LRQR-------GGGGAHVEIEESL-------------------------LQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQK 169          
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Match: A0A835YMR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.070e-17
Identity = 76/215 (35.35%), Postives = 96/215 (44.65%), Query Frame = 2
Query:   29 EDDVLLMLLHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFG---KNNITVLDTREELPATFSIGV---EPDEVTRLTQEAKRLAGQPLCPSGAETMETADAEPGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFADAASLMAEGPGFGSGSWALEDGGDAVKITDPLQLFGGLVPPPLRKAKKNFAGVLELTIAAANMAQRVFMLER 655
            E  + L LL A D LH  ++EL LCLKQGFFN+TKAR+A  G      ITVLDTREE  A  ++ +   +PD        A+ L    L    A      D  P               S+ G+ NG+      +LR R              G                  D +QLFGGLVPP LRKAK+NF+  L+    AA + QRV +L R
Sbjct:   22 ETSLTLALLEAADELHNAKAELSLCLKQGFFNMTKARLAAGGGAHSAGITVLDTREEFHAAVTVELLDKDPD-----ASPARELRALKLPAGHAFQRAGNDDAP--------------HSSGGSVNGS-----SSLRQR-----------NHAGSXXXXXXXXXXXXXAAGKDSMQLFGGLVPPALRKAKRNFSSALDYVFLAAELTQRVALLYR 201          
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Match: A0A7S2BYK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.210e-11
Identity = 66/222 (29.73%), Postives = 102/222 (45.95%), Query Frame = 2
Query:   14 IEMASEDDVLLMLLHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFGKNNITVLDTREELPATFSIGVEPDEVTRLTQEAKRLAGQPLCPSGAETMETADAEPGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFA-----DAASLMAEGPGFGSGSWALEDGGDAVKITDPLQLFGGLVPPPLRKAKKNFAGVLELTIAAANMAQRVFMLERRAR 664
            +++  ED+ L+ L   VD L+  +  +   +++GF N+TKAR +  G+N ++ L+ RE + A   +    +E   +  E                                 R RE+  A  + NG        +R RGA       D  ++ +  P   +   A++  G A K T  L LFGGLVPPP+RKAK +FA  +E  IAAAN+AQ + + ER  R
Sbjct:    7 LQLTGEDEALVALFEKVDGLYAEQQRIAKSMRKGFLNITKARQS-MGRNALSALNCRELVDAQVRVDATHEEDAGMLWE---------------------------------RHRESPGAVASQNGA-------VRRRGAGGLSGPIDEDTVSSHTPDEPAADDAVQ--GAAQKNT--LMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSIALAEREIR 183          
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Match: A0A7S2S2U0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.750e-10
Identity = 60/213 (28.17%), Postives = 104/213 (48.83%), Query Frame = 2
Query:   20 MASEDDVLLMLLHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFGKNNITVLDTREELPATFSIGVEPDEVTRLTQEAKRLAGQPLCPSGAETMETADAEPGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFADAASLMAEGPGFGSGSWALEDGGDAVKITDPLQLFGGLVPPPLRKAKKNFAGVLELTIAAANMAQRVFMLERR 658
            ++ EDD LL LL      ++ + +    L++GF N+TKAR +  G+  +T LD REE+ A+FS+  +  +V+++ +++  +  +                         FRR  +RS +           +TLR RG+   ++            + +++D  +A +  DP+ LFGGLVPP LR+A+ +F   L+  I+AAN+  R   L  R
Sbjct:   11 LSPEDDALLGLLREACLYYEEQQKAAKALRRGFLNVTKARQS-MGRGALTALDCREEMVASFSL--DQSDVSQVDEQSALILWR------------------------RFRRVASRSGA-----------KTLRRRGSTPPSSDEPE--------NTSVDDREEARE--DPVLLFGGLVPPTLRRAQADFQVALDFYISAANVIHRAMQLRAR 175          
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Match: A0A7S2H454_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H454_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.990e-8
Identity = 56/218 (25.69%), Postives = 92/218 (42.20%), Query Frame = 2
Query:   17 EMASEDDVLLMLLHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFGKNNITVLDTREELPATFSIGVEPD--EVTRLTQEAKRLAGQPLCPSGAETMETADAEPGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFADAASLMAEGPGFGSGSWALEDGGDAVKITDPLQLFGGLVPPPLRKAKKNFAGVLELTIAAANMAQRVFMLERRAR 664
            E    D  LL +L   D  +  +  +   +++GF N+ KAR +  G+ ++T LD RE + A F+I    D  ++ R                 ++T+   + +          RRR    A GNG      T + ++           ++EG               A    DP+ LFGGLVPPP+R+A + F   +E  + AAN+A ++   E+  R
Sbjct:    1 EPGDADSKLLSILSQTDEFYAEQQRIAKAIRKGFLNMAKARQS-LGRGSLTALDCRENVCAQFTIDAHTDCDDIWR---------------RHSDTLNAPEEK--------ALRRR---GAGGNGK-----TNEDIQS----------VSEG---------------AEDHNDPMLLFGGLVPPPMRRAGQEFTAAIEHIVTAANLAAKIIESEKELR 161          
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Match: A0A0D2M5V9_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M5V9_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-5
Identity = 61/201 (30.35%), Postives = 89/201 (44.28%), Query Frame = 2
Query:   53 LHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFGKNNITVLDTREELPATFSIGV-EPDEVTRLTQ--EAKRLAGQPLCPSGAETM-ETADAEPGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFADAASLMAEGPGFGSGSWALEDGGDAVKITDPLQLFGGLVPPP-LRKAKKNFAGVLELTIAAANMAQRV 640
            LHA+D+     ++L   LK G+F+L +A+ AG    ++       ++ A+  + V EP +   L    E +R A  P   S A    ET+       R  A  R   + +A+ +G   PAA P                    G G GS A           DPLQ FGG +PP  LR+A+++F G L   +AAAN  QR+
Sbjct:   25 LHAIDDYLAACTQLTAALKGGWFSLARAKYAGAPGASLGQAAYPGDMRASAVVSVVEPSDPDDLFDRFELQRAADGPSVSSDAGAAPETSGGGRDRGRDAAADRSNASEAAAADGQ-VPAAGPSAT-----------------GSGRGSKA---------AADPLQWFGGGLPPADLRQAQRDFQGALAAAVAAANQLQRL 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14158.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8P7_ECTSI9.650e-2131.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMR8_9STRA2.070e-1735.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BYK8_9STRA1.210e-1129.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2S2U0_9STRA3.750e-1028.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2H454_9STRA2.990e-825.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0D2M5V9_9CHLO1.060e-530.35Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14158contigP-wetherbeei_contig14158:18..1506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1099
Hectar predicted targeting categoryother localisation
Exons3
Cds size963
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186011.0914335-UTR-P-wetherbeei_contig14158:17..1341683186011.0914335-UTR-P-wetherbeei_contig14158:17..134Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14158 18..134 -
1683186011.1223078-UTR-P-wetherbeei_contig14158:1487..15061683186011.1223078-UTR-P-wetherbeei_contig14158:1487..1506Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14158 1488..1506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186011.0992944-CDS-P-wetherbeei_contig14158:134..5231683186011.0992944-CDS-P-wetherbeei_contig14158:134..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14158 135..523 -
1683186011.1069143-CDS-P-wetherbeei_contig14158:722..12031683186011.1069143-CDS-P-wetherbeei_contig14158:722..1203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14158 723..1203 -
1683186011.1144717-CDS-P-wetherbeei_contig14158:1394..14871683186011.1144717-CDS-P-wetherbeei_contig14158:1394..1487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14158 1395..1487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14158.1.1prot_P-wetherbeei_contig14158.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14158 135..1487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14158.1.1

>prot_P-wetherbeei_contig14158.1.1 ID=prot_P-wetherbeei_contig14158.1.1|Name=mRNA_P-wetherbeei_contig14158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MASEDDVLLMLLHAVDNLHQMRSELHLCLKQGFFNLTKARMAGFGKNNIT
VLDTREELPATFSIGVEPDEVTRLTQEAKRLAGQPLCPSGAETMETADAE
PGSPRPLAVFRRRETRSASGNGNGTPAATPQTLRMRGAFADAASLMAEGP
GFGSGSWALEDGGDAVKITDPLQLFGGLVPPPLRKAKKNFAGVLELTIAA
ANMAQRVFMLERRARWHRAQRRLRATTLLPTLADRTTPPPGAARTALAAA
APAAAAPATATAAPIGPNGHAEAHANGSEAGPLLRAEGAGSAQRAGAPVG
TSPTAGRGCGTGGGGQGGNR*
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mRNA from alignment at P-wetherbeei_contig14158:18..1506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14158.1.1 ID=mRNA_P-wetherbeei_contig14158.1.1|Name=mRNA_P-wetherbeei_contig14158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1489bp|location=Sequence derived from alignment at P-wetherbeei_contig14158:18..1506- (Phaeothamnion wetherbeei SAG_119_79)
TTTCAGCCAGGGCATAGAAATGGCTTCCGAGGACGACGTGTTACTCATGC TCCTCCACGCCGTCGACAACCTCCACCAGATGCGATCCGAGCTCCATCTC TGCTTGAAACAGGTGAGCAAGAGCGAATTCTGTGCCCCGGTCATCTTTCC TCCACCACCTTTTTCTCCACAATGAACGTCAGCTGGTGTTAAGCTCTCCC ATTTTTAATTTGTCTGGTCAAGCCCGTAGCTGTCTTACCTTTTGTTTCCG AGGCTCCTTCTTCATGTCGTTCTCTTCTTCCTTTCCTCTCTCCCTCTTAC CAGGGGTTTTTCAACCTGACCAAAGCTCGAATGGCTGGCTTTGGCAAGAA TAACATCACAGTCTTGGATACCCGGGAGGAGCTGCCGGCCACGTTTTCCA TTGGCGTGGAACCGGACGAGGTCACCAGGCTAACACAGGAGGCAAAGCGC CTTGCGGGGCAGCCACTATGTCCTAGCGGTGCCGAAACAATGGAAACGGC CGATGCTGAGCCAGGGTCGCCTCGGCCACTGGCTGTCTTCAGGCGCCGTG AAACTCGCAGCGCATCGGGAAACGGCAATGGCACCCCCGCGGCGACGCCA CAGACGCTGCGCATGCGGGGAGCGTTCGCCGACGCGGCGAGCCTGATGGC CGAGGGTCCGGGGTTCGGCTCGGGCAGTTGGGCGCTAGAGGACGGCGGCG ACGCGGTGAAGATCACCGACCCGCTGCAGCTTTTCGGCGGGCTTGTGCCG CCGCCACTGCGTAAGGCCAAGAAGAATTTTGCAGGTGCGTTCGTTCTTCT TTGATTGCTTAAGCGTTAGATTGCAGTTAAACCCTTTTGTGGTTTTGTTT CGGAGACGGCCACGTTCTCGCGTGGGCGATGGCAGCCATTCAAACCTTTT CTTGCTGCGCCTCAATTGCAAAAGCCCCGCCTTTTGTCTCTTGCCATTCT CGCCCCTTGACGTCCGTTTCTGTGGCATCTCAGGTGTGCTGGAGTTGACC ATTGCAGCCGCGAACATGGCGCAGCGGGTCTTTATGCTGGAGCGCCGGGC GCGGTGGCACCGCGCTCAACGACGTTTGCGGGCGACCACGCTGCTGCCGA CCCTGGCAGACAGAACCACTCCGCCGCCTGGCGCGGCAAGAACGGCCTTG GCGGCGGCAGCACCGGCGGCGGCAGCACCGGCGACAGCGACGGCTGCGCC GATAGGTCCAAATGGGCACGCAGAGGCGCATGCGAACGGAAGCGAGGCGG GTCCGCTCCTCCGGGCAGAAGGCGCCGGGTCGGCGCAGCGGGCTGGGGCG CCAGTAGGAACGAGTCCAACGGCAGGAAGGGGCTGCGGCACCGGCGGCGG TGGTCAAGGAGGCAACCGTTGAGAAAGGTTGCCGGAGCCGTGGGGCCCTC AAAAGTCCATAAACAGAACGTAACGGACAGAACTGCCAAATCTTTCATTA CGATTCATGAGGAAGTGGGAGGAGCCATCTGCGTCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14158:18..1506-

>mRNA_P-wetherbeei_contig14158.1.1 ID=mRNA_P-wetherbeei_contig14158.1.1|Name=mRNA_P-wetherbeei_contig14158.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig14158:18..1506- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTCCGAGGACGACGTGTTACTCATGCTCCTCCACGCCGTCGACAA
CCTCCACCAGATGCGATCCGAGCTCCATCTCTGCTTGAAACAGGGGTTTT
TCAACCTGACCAAAGCTCGAATGGCTGGCTTTGGCAAGAATAACATCACA
GTCTTGGATACCCGGGAGGAGCTGCCGGCCACGTTTTCCATTGGCGTGGA
ACCGGACGAGGTCACCAGGCTAACACAGGAGGCAAAGCGCCTTGCGGGGC
AGCCACTATGTCCTAGCGGTGCCGAAACAATGGAAACGGCCGATGCTGAG
CCAGGGTCGCCTCGGCCACTGGCTGTCTTCAGGCGCCGTGAAACTCGCAG
CGCATCGGGAAACGGCAATGGCACCCCCGCGGCGACGCCACAGACGCTGC
GCATGCGGGGAGCGTTCGCCGACGCGGCGAGCCTGATGGCCGAGGGTCCG
GGGTTCGGCTCGGGCAGTTGGGCGCTAGAGGACGGCGGCGACGCGGTGAA
GATCACCGACCCGCTGCAGCTTTTCGGCGGGCTTGTGCCGCCGCCACTGC
GTAAGGCCAAGAAGAATTTTGCAGGTGTGCTGGAGTTGACCATTGCAGCC
GCGAACATGGCGCAGCGGGTCTTTATGCTGGAGCGCCGGGCGCGGTGGCA
CCGCGCTCAACGACGTTTGCGGGCGACCACGCTGCTGCCGACCCTGGCAG
ACAGAACCACTCCGCCGCCTGGCGCGGCAAGAACGGCCTTGGCGGCGGCA
GCACCGGCGGCGGCAGCACCGGCGACAGCGACGGCTGCGCCGATAGGTCC
AAATGGGCACGCAGAGGCGCATGCGAACGGAAGCGAGGCGGGTCCGCTCC
TCCGGGCAGAAGGCGCCGGGTCGGCGCAGCGGGCTGGGGCGCCAGTAGGA
ACGAGTCCAACGGCAGGAAGGGGCTGCGGCACCGGCGGCGGTGGTCAAGG
AGGCAACCGTTGA
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