mRNA_P-wetherbeei_contig14151.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14151.1.1
Unique NamemRNA_P-wetherbeei_contig14151.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14151.1.1 vs. uniprot
Match: A0A6M5YWW0_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YWW0_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.620e-13
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 TTGASVTLNTAGTVGTAPNPIQFADNTNTAQQVVAIGTVTQPSAVFLGGLGTLTLGAITTN--NGAVTVNAADRLVM-SGA-LNAGNQTVTLNAD-TAAG 285
            TTGASV LNTAG VG+A N +QFAD++NTAQQVV +G    PSAV+L GLG+LTLG I     N  V V A   LV+ SGA +N+G   +TL AD TAAG
Sbjct:  914 TTGASVALNTAGAVGSATNRVQFADDSNTAQQVVTVGAALAPSAVYLDGLGSLTLGGIAGGVANTLVNVTARTNLVVASGATINSGTSALTLGADLTAAG 1013
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BLAST of mRNA_P-wetherbeei_contig14151.1.1 vs. uniprot
Match: A0A1H1LX26_9BACT (Autotransporter-associated beta strand repeat-containing protein n=1 Tax=Opitutus sp. GAS368 TaxID=1882749 RepID=A0A1H1LX26_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 7.390e-7
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:  799 LSGNLLTTSSVGGTTLNSANTVSSFNAANTVGGNIQLTN-GANLIITGVSQLGGGNVTV 972
            +SG LLTT+S  GTTLN+ANTV+SF+A NT  GNI LTN  A L ITG+SQ GGG VTV
Sbjct: 4407 VSGALLTTNSATGTTLNAANTVTSFSATNTASGNIALTNTAAPLTITGISQTGGGTVTV 4465
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BLAST of mRNA_P-wetherbeei_contig14151.1.1 vs. uniprot
Match: U5N4F8_9BURK (Exoprotein n=1 Tax=Candidatus Symbiobacter mobilis CR TaxID=946483 RepID=U5N4F8_9BURK)

HSP 1 Score: 59.7 bits (143), Expect = 8.940e-6
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 1 
Query:  787 QAAVLSGNLLTTSSVGGTTL-NSANTVSSFNAANTVGGNIQLTNGANLIITGVSQLGGGNVTVVNTGTLGTGGTISTAANGN-ISLSSSDDMTIAHNVTAGGAGTIALNVTTNDKTLTHTANAISSTTG--NITFTSDKMALTGGTISTG 1224
            Q A L+       S+ GTTL NS N VSSF A NT  G+I LTN   L + G+SQ GGG  ++ NTG++ T G IST+ N + ++L +  D+ + +     G  +   N   ++      A++ISST G  ++   SD     GG IS G
Sbjct: 1760 QTAALTTXXXXXXSISGTTLTNSGNKVSSFQATNTASGSISLTNTVPLTVAGISQTGGGQTSISNTGSITTTGKISTSRNLDLVALGTGGDIVLNNVFEYTGTQSGTFNAKAHNDVRLGNASSISSTAGPLHVNLISDSDGANGGIISLG 1909
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14151.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6M5YWW0_9BACT1.620e-1359.00Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
A0A1H1LX26_9BACT7.390e-767.80Autotransporter-associated beta strand repeat-cont... [more]
U5N4F8_9BURK8.940e-637.33Exoprotein n=1 Tax=Candidatus Symbiobacter mobilis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14151contigP-wetherbeei_contig14151:402..1643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946483.Cenrod_0213
PFAMsDUF3739,ESPR,Haemagg_act
Model size1242
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-06
EggNOG OGsCOG2911@1|root,COG2911@2|Bacteria,1QXZF@1224|Proteobacteria
Descriptionfamily outer membrane protein
Cds size1242
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.901315-CDS-P-wetherbeei_contig14151:401..16431683186010.901315-CDS-P-wetherbeei_contig14151:401..1643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14151 402..1643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14151.1.1prot_P-wetherbeei_contig14151.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14151 402..1643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14151.1.1

>prot_P-wetherbeei_contig14151.1.1 ID=prot_P-wetherbeei_contig14151.1.1|Name=mRNA_P-wetherbeei_contig14151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=414bp
TTGASVTLNTAGTVGTAPNPIQFADNTNTAQQVVAIGTVTQPSAVFLGGL
GTLTLGAITTNNGAVTVNAADRLVMSGALNAGNQTVTLNADTAAGTSGFD
MFAGGSITTSNSTGTAVAINVNAAGGGTGSAALRNITTGAGGTITVATNT
GGNATGGSITQTGGTLLNSGLAGSVVLNTPTGGASGIGTGGLTILTTTDN
VTANAGSGGVFVTESNGASFTATAQGAGNIQLTSTAGTLNIAGTTSTGTG
NISLTATAGTITQAAVLSGNLLTTSSVGGTTLNSANTVSSFNAANTVGGN
IQLTNGANLIITGVSQLGGGNVTVVNTGTLGTGGTISTAANGNISLSSSD
DMTIAHNVTAGGAGTIALNVTTNDKTLTHTANAISSTTGNITFTSDKMAL
TGGTISTGAGGVSL
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mRNA from alignment at P-wetherbeei_contig14151:402..1643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14151.1.1 ID=mRNA_P-wetherbeei_contig14151.1.1|Name=mRNA_P-wetherbeei_contig14151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1242bp|location=Sequence derived from alignment at P-wetherbeei_contig14151:402..1643- (Phaeothamnion wetherbeei SAG_119_79)
ACGACAGGCGCATCGGTGACATTGAACACGGCCGGAACGGTTGGCACGGC
ACCAAACCCGATCCAGTTTGCGGACAACACCAACACCGCGCAGCAGGTGG
TGGCGATCGGCACGGTCACGCAACCAAGCGCAGTATTCCTGGGCGGTCTC
GGTACCTTGACGTTGGGGGCCATCACCACCAACAACGGTGCGGTGACGGT
AAATGCGGCCGACCGGCTGGTGATGAGCGGCGCGCTTAACGCCGGTAACC
AGACGGTGACGCTGAATGCCGATACCGCCGCTGGAACGAGCGGTTTTGAC
ATGTTCGCCGGCGGTTCGATAACCACCTCGAATAGCACGGGCACGGCGGT
CGCGATCAACGTGAATGCGGCCGGTGGCGGTACGGGCAGCGCCGCGCTGC
GCAACATTACGACTGGAGCGGGCGGTACGATTACGGTAGCAACCAACACA
GGCGGCAATGCCACGGGTGGCTCGATTACCCAGACCGGCGGCACGTTGTT
GAACAGCGGGTTGGCCGGCTCGGTGGTGTTGAATACACCGACCGGTGGCG
CAAGCGGCATCGGCACGGGTGGCCTCACCATCCTGACGACGACTGATAAC
GTAACGGCGAACGCCGGCAGCGGCGGTGTGTTCGTGACCGAATCGAATGG
CGCGAGCTTCACGGCGACGGCGCAAGGGGCGGGCAATATTCAGCTCACCT
CGACGGCCGGGACGCTGAACATCGCAGGCACGACCTCCACGGGCACCGGC
AATATCTCGCTCACGGCTACCGCGGGAACCATTACACAAGCCGCCGTATT
GAGCGGCAATTTGCTCACGACGAGTTCGGTCGGCGGCACCACCCTCAACA
GCGCGAATACAGTGTCGAGTTTCAACGCGGCAAACACCGTTGGCGGCAAC
ATTCAGTTAACGAACGGCGCGAACCTCATCATCACCGGCGTTAGCCAGTT
GGGTGGCGGGAACGTGACCGTCGTCAATACCGGCACGCTGGGCACCGGCG
GCACGATCAGCACGGCCGCCAACGGCAATATCAGCCTGAGTTCCAGCGAC
GACATGACGATCGCCCATAACGTGACGGCGGGTGGCGCCGGCACGATCGC
ATTGAATGTCACGACCAATGACAAGACGCTGACGCACACTGCGAACGCGA
TCAGCAGCACCACTGGCAATATCACCTTTACCTCGGACAAGATGGCGCTC
ACCGGCGGCACGATCAGCACCGGCGCGGGTGGCGTGTCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14151:402..1643-

>mRNA_P-wetherbeei_contig14151.1.1 ID=mRNA_P-wetherbeei_contig14151.1.1|Name=mRNA_P-wetherbeei_contig14151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1242bp|location=Sequence derived from alignment at P-wetherbeei_contig14151:402..1643- (Phaeothamnion wetherbeei SAG_119_79)
ACGACAGGCGCATCGGTGACATTGAACACGGCCGGAACGGTTGGCACGGC
ACCAAACCCGATCCAGTTTGCGGACAACACCAACACCGCGCAGCAGGTGG
TGGCGATCGGCACGGTCACGCAACCAAGCGCAGTATTCCTGGGCGGTCTC
GGTACCTTGACGTTGGGGGCCATCACCACCAACAACGGTGCGGTGACGGT
AAATGCGGCCGACCGGCTGGTGATGAGCGGCGCGCTTAACGCCGGTAACC
AGACGGTGACGCTGAATGCCGATACCGCCGCTGGAACGAGCGGTTTTGAC
ATGTTCGCCGGCGGTTCGATAACCACCTCGAATAGCACGGGCACGGCGGT
CGCGATCAACGTGAATGCGGCCGGTGGCGGTACGGGCAGCGCCGCGCTGC
GCAACATTACGACTGGAGCGGGCGGTACGATTACGGTAGCAACCAACACA
GGCGGCAATGCCACGGGTGGCTCGATTACCCAGACCGGCGGCACGTTGTT
GAACAGCGGGTTGGCCGGCTCGGTGGTGTTGAATACACCGACCGGTGGCG
CAAGCGGCATCGGCACGGGTGGCCTCACCATCCTGACGACGACTGATAAC
GTAACGGCGAACGCCGGCAGCGGCGGTGTGTTCGTGACCGAATCGAATGG
CGCGAGCTTCACGGCGACGGCGCAAGGGGCGGGCAATATTCAGCTCACCT
CGACGGCCGGGACGCTGAACATCGCAGGCACGACCTCCACGGGCACCGGC
AATATCTCGCTCACGGCTACCGCGGGAACCATTACACAAGCCGCCGTATT
GAGCGGCAATTTGCTCACGACGAGTTCGGTCGGCGGCACCACCCTCAACA
GCGCGAATACAGTGTCGAGTTTCAACGCGGCAAACACCGTTGGCGGCAAC
ATTCAGTTAACGAACGGCGCGAACCTCATCATCACCGGCGTTAGCCAGTT
GGGTGGCGGGAACGTGACCGTCGTCAATACCGGCACGCTGGGCACCGGCG
GCACGATCAGCACGGCCGCCAACGGCAATATCAGCCTGAGTTCCAGCGAC
GACATGACGATCGCCCATAACGTGACGGCGGGTGGCGCCGGCACGATCGC
ATTGAATGTCACGACCAATGACAAGACGCTGACGCACACTGCGAACGCGA
TCAGCAGCACCACTGGCAATATCACCTTTACCTCGGACAAGATGGCGCTC
ACCGGCGGCACGATCAGCACCGGCGCGGGTGGCGTGTCGCTG
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